Wall clock time and date at job start Sat Apr 11 2020 06:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35451 * 128.00418 * 2 1 4 4 O 1.34045 * 106.44732 * 180.23439 * 3 2 1 5 5 N 1.20922 * 111.56410 * 359.74083 * 4 3 2 6 6 C 1.30177 * 111.60786 * 0.02562 * 5 4 3 7 7 C 1.50693 * 126.80684 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.47328 * 90.02301 * 7 6 5 9 9 C 1.46896 * 111.00034 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.47390 * 34.54765 * 9 8 7 11 11 C 1.53001 * 109.47249 * 274.54655 * 9 8 7 12 12 C 1.53003 * 109.47164 * 154.55130 * 9 8 7 13 13 C 1.53000 * 109.47213 * 185.07319 * 12 9 8 14 14 H 1.09003 * 109.47108 * 303.15197 * 13 12 9 15 15 C 1.52993 * 109.47363 * 183.15181 * 13 12 9 16 16 N 1.46503 * 109.47440 * 63.15021 * 13 12 9 17 17 C 1.34771 * 120.00355 * 206.04860 * 16 13 12 18 18 O 1.21282 * 120.00188 * 359.97438 * 17 16 13 19 19 C 1.50701 * 120.00216 * 180.02562 * 17 16 13 20 20 S 1.80995 * 109.47434 * 179.97438 * 19 17 16 21 21 C 1.76199 * 100.00266 * 179.97438 * 20 19 17 22 22 H 1.07994 * 119.99649 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99912 * 179.97438 * 21 20 19 24 24 N 1.31636 * 119.99569 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 120.00243 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47000 * 89.99727 * 25 23 21 27 27 H 1.48502 * 109.47130 * 209.99993 * 25 23 21 28 28 H 1.48496 * 109.47138 * 329.99896 * 25 23 21 29 29 H 1.08995 * 109.47644 * 270.16571 * 1 2 3 30 30 H 1.08999 * 109.47017 * 30.17215 * 1 2 3 31 31 H 1.08999 * 109.46985 * 150.17101 * 1 2 3 32 32 H 1.07998 * 126.77877 * 359.95075 * 3 2 1 33 33 H 1.09000 * 109.46959 * 330.02445 * 7 6 5 34 34 H 1.08995 * 109.47374 * 210.02377 * 7 6 5 35 35 H 1.00905 * 110.99598 * 303.95321 * 8 7 6 36 36 H 1.09005 * 109.46796 * 59.99685 * 11 9 8 37 37 H 1.08999 * 109.47641 * 179.97438 * 11 9 8 38 38 H 1.08999 * 109.47014 * 300.00340 * 11 9 8 39 39 H 1.08999 * 109.47226 * 305.07082 * 12 9 8 40 40 H 1.08993 * 109.47510 * 65.07276 * 12 9 8 41 41 H 1.09000 * 109.47282 * 299.99629 * 15 13 12 42 42 H 1.09005 * 109.47245 * 59.99787 * 15 13 12 43 43 H 1.09008 * 109.47292 * 179.97438 * 15 13 12 44 44 H 0.97004 * 119.99710 * 26.04480 * 16 13 12 45 45 H 1.09000 * 109.46453 * 299.99620 * 19 17 16 46 46 H 1.09000 * 109.47500 * 59.99381 * 19 17 16 47 47 H 0.96998 * 119.99536 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5876 0.5748 -0.0053 5 7 3.5878 -0.6344 -0.0032 6 6 2.3776 -1.1140 0.0030 7 6 1.9827 -2.5682 0.0066 8 7 1.8602 -3.0389 1.3928 9 6 1.4762 -4.4562 1.4355 10 1 1.9343 -4.9822 0.5979 11 6 -0.0462 -4.5751 1.3411 12 6 1.9555 -5.0750 2.7501 13 6 1.6683 -6.5778 2.7409 14 1 0.6037 -6.7432 2.5755 15 6 2.0755 -7.1831 4.0857 16 7 2.4341 -7.2149 1.6668 17 6 1.9937 -8.3626 1.1143 18 8 0.9636 -8.8683 1.5068 19 6 2.7819 -9.0183 0.0098 20 16 1.9387 -10.5305 -0.5175 21 6 3.0441 -11.0739 -1.7774 22 1 3.9289 -10.4979 -2.0045 23 6 2.7781 -12.2426 -2.4773 24 7 3.6037 -12.6482 -3.4189 25 14 1.2478 -13.2391 -2.0840 26 1 0.1208 -12.7701 -2.9296 27 1 1.5083 -14.6752 -2.3582 28 1 0.8979 -13.0643 -0.6514 29 1 -0.3634 0.0030 1.0276 30 1 -0.3633 0.8884 -0.5165 31 1 -0.3633 -0.8915 -0.5112 32 1 2.0575 2.1094 -0.0007 33 1 2.7443 -3.1528 -0.5096 34 1 1.0265 -2.6864 -0.5030 35 1 2.7149 -2.8806 1.9052 36 1 -0.3878 -4.1341 0.4046 37 1 -0.3312 -5.6267 1.3724 38 1 -0.5044 -4.0491 2.1787 39 1 3.0275 -4.9107 2.8595 40 1 1.4297 -4.6098 3.5838 41 1 3.1401 -7.0178 4.2512 42 1 1.5057 -6.7091 4.8850 43 1 1.8704 -8.2537 4.0794 44 1 3.2582 -6.8106 1.3531 45 1 2.8626 -8.3336 -0.8345 46 1 3.7792 -9.2665 0.3729 47 1 3.4180 -13.4652 -3.9077 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133736133.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:51 Heat of formation + Delta-G solvation = 9.462339 kcal Electronic energy + Delta-G solvation = -26786.174855 eV Core-core repulsion = 22905.116780 eV Total energy + Delta-G solvation = -3881.058075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.28168 -39.73891 -38.05213 -36.07631 -34.74794 -32.87646 -32.44832 -31.82668 -30.42719 -28.68145 -28.47575 -27.27509 -26.08418 -25.62011 -22.23085 -21.97555 -21.38356 -20.82254 -20.21244 -17.97539 -17.92177 -17.78928 -16.61718 -16.27218 -16.17994 -15.51257 -15.18795 -15.00810 -14.93975 -14.62332 -14.00359 -13.83809 -13.66523 -13.44025 -13.42054 -13.19672 -13.08807 -12.82576 -12.80330 -12.57276 -12.50504 -12.10159 -12.06572 -11.83752 -11.61606 -11.38995 -11.27186 -11.02646 -11.00066 -10.91302 -10.60388 -10.33233 -9.86626 -9.71832 -9.51022 -9.03638 -8.98307 -8.86387 -8.51266 -6.92759 -6.29853 -4.01598 1.13751 1.79563 2.75973 2.91051 2.96811 3.30091 3.33529 3.49467 3.58887 3.65357 3.94479 4.13182 4.32111 4.45064 4.52036 4.61312 4.70100 4.74318 4.84886 4.95788 5.09133 5.12307 5.13787 5.18060 5.21558 5.24245 5.29438 5.33318 5.43318 5.45542 5.50882 5.59690 5.60737 5.68689 5.74760 5.76484 5.80906 5.92425 6.00000 6.11969 6.16569 6.57961 6.58606 6.91397 7.60522 7.90806 7.93259 8.40767 8.49118 9.16272 10.79412 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.002111 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.815668 B =13258.915538 C =14262.930786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.183 4.183 3 C -0.071 4.071 4 O 0.101 5.899 5 N -0.361 5.361 6 C 0.022 3.978 7 C 0.137 3.863 8 N -0.678 5.678 9 C 0.083 3.917 10 H 0.052 0.948 11 C -0.142 4.142 12 C -0.127 4.127 13 C 0.143 3.857 14 H 0.094 0.906 15 C -0.164 4.164 16 N -0.732 5.732 17 C 0.532 3.468 18 O -0.519 6.519 19 C -0.125 4.125 20 S -0.141 6.141 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.215 0.785 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.343 0.657 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.396 0.604 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.483 28.529 11.515 31.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.187 4.187 3 C -0.152 4.152 4 O 0.034 5.966 5 N -0.064 5.064 6 C -0.138 4.138 7 C 0.008 3.992 8 N -0.311 5.311 9 C -0.026 4.026 10 H 0.070 0.930 11 C -0.200 4.200 12 C -0.165 4.165 13 C 0.038 3.962 14 H 0.112 0.888 15 C -0.222 4.222 16 N -0.387 5.387 17 C 0.318 3.682 18 O -0.393 6.393 19 C -0.276 4.276 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.231 0.769 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.161 0.839 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.230 0.770 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.586 27.210 12.086 30.293 hybrid contribution 1.212 0.104 -1.006 1.578 sum -4.374 27.314 11.080 29.799 Atomic orbital electron populations 1.20082 0.87232 1.02968 1.02951 1.21319 0.98808 0.91387 1.07205 1.25774 0.83157 1.01188 1.05083 1.84820 1.29153 1.15443 1.67185 1.73865 1.22448 0.91464 1.18636 1.23380 0.88458 0.98399 1.03525 1.20211 1.01496 0.86445 0.91094 1.60550 1.39610 1.18782 1.12129 1.21564 0.97154 0.86517 0.97399 0.92953 1.21849 0.94114 1.01927 1.02101 1.22068 1.01667 0.94603 0.98181 1.20937 0.97837 0.90427 0.87009 0.88784 1.22180 1.01425 1.02263 0.96331 1.46098 1.27803 1.25892 1.38884 1.20252 0.85465 0.80009 0.82476 1.90694 1.23988 1.62523 1.62110 1.23288 1.02953 1.02290 0.99041 1.84770 1.35776 1.23226 1.47687 1.22318 1.11077 1.12949 1.20572 0.89437 1.24724 0.96720 0.96263 0.93663 1.69943 1.36446 1.23353 1.21943 0.86727 0.83228 0.79930 0.81920 1.19211 1.19941 1.15921 0.90520 0.91262 0.90924 0.76861 0.93126 0.88646 0.83892 0.92869 0.91719 0.91938 0.91449 0.89488 0.92602 0.91821 0.91659 0.76974 0.88694 0.88568 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.37 36.00 0.37 -0.01 16 2 C -0.18 -1.35 6.32 -104.42 -0.66 -2.01 16 3 C -0.07 -0.43 12.26 29.74 0.36 -0.07 16 4 O 0.10 0.91 11.20 17.16 0.19 1.10 16 5 N -0.36 -3.87 12.07 33.42 0.40 -3.47 16 6 C 0.02 0.20 6.84 -82.10 -0.56 -0.36 16 7 C 0.14 1.18 5.99 -4.98 -0.03 1.15 16 8 N -0.68 -5.47 6.30 -108.00 -0.68 -6.15 16 9 C 0.08 0.69 2.63 -67.71 -0.18 0.51 16 10 H 0.05 0.50 7.19 -51.93 -0.37 0.13 16 11 C -0.14 -1.27 9.18 37.16 0.34 -0.93 16 12 C -0.13 -0.97 4.28 -26.73 -0.11 -1.08 16 13 C 0.14 1.48 2.44 -67.93 -0.17 1.31 16 14 H 0.09 1.15 5.83 -51.93 -0.30 0.85 16 15 C -0.16 -1.64 9.49 37.15 0.35 -1.29 16 16 N -0.73 -8.79 4.36 -53.81 -0.23 -9.03 16 17 C 0.53 9.10 7.82 -10.99 -0.09 9.02 16 18 O -0.52 -10.79 15.51 5.56 0.09 -10.70 16 19 C -0.13 -2.39 6.16 36.01 0.22 -2.17 16 20 S -0.14 -3.55 18.55 -107.50 -1.99 -5.55 16 21 C -0.52 -15.04 10.04 30.94 0.31 -14.72 16 22 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 23 C 0.09 2.78 5.50 -17.43 -0.10 2.69 16 24 N -0.88 -26.62 13.97 55.49 0.78 -25.85 16 25 Si 0.86 21.80 27.74 -169.99 -4.72 17.09 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 28 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.39 7.65 -51.93 -0.40 -0.01 16 32 H 0.21 0.37 8.06 -52.49 -0.42 -0.05 16 33 H 0.05 0.47 8.05 -51.93 -0.42 0.05 16 34 H 0.10 0.76 6.98 -51.93 -0.36 0.40 16 35 H 0.34 2.76 8.26 -39.29 -0.32 2.43 16 36 H 0.05 0.46 7.48 -51.93 -0.39 0.08 16 37 H 0.06 0.67 6.50 -51.93 -0.34 0.33 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.46 8.02 -51.93 -0.42 0.04 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 44 H 0.40 3.83 8.60 -40.82 -0.35 3.48 16 45 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 46 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 47 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 402.21 15.07 6.06 6.06 Total: -1.00 -34.69 402.21 -7.51 -42.20 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.48 Total: 2.25 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 0.07 Total: -7.96 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.26 Total: -44.49 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.28 Total: -9.60 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.72 Total: 17.09 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.69 -7.51 -42.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133736133.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.665 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds