Wall clock time and date at job start Sat Apr 11 2020 06:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35452 * 128.01125 * 2 1 4 4 O 1.34038 * 106.44528 * 180.23468 * 3 2 1 5 5 N 1.20919 * 111.56954 * 359.75136 * 4 3 2 6 6 C 1.30178 * 111.60724 * 359.97438 * 5 4 3 7 7 C 1.50696 * 126.80492 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.46908 * 90.02559 * 7 6 5 9 9 C 1.46899 * 110.99879 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47347 * 324.99650 * 9 8 7 11 11 C 1.53005 * 109.47192 * 85.00145 * 9 8 7 12 12 C 1.52999 * 109.47178 * 204.99823 * 9 8 7 13 13 C 1.53006 * 109.47054 * 65.00372 * 12 9 8 14 14 H 1.09001 * 109.47002 * 304.99688 * 13 12 9 15 15 C 1.52997 * 109.47127 * 185.00114 * 13 12 9 16 16 N 1.46492 * 109.47363 * 64.99814 * 13 12 9 17 17 C 1.34772 * 120.00385 * 205.00351 * 16 13 12 18 18 O 1.21278 * 119.99770 * 359.97438 * 17 16 13 19 19 C 1.50705 * 120.00486 * 180.02562 * 17 16 13 20 20 S 1.80999 * 109.47084 * 179.97438 * 19 17 16 21 21 C 1.76205 * 99.99558 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00158 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99627 * 179.97438 * 21 20 19 24 24 N 1.31627 * 119.99964 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00154 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.46964 * 89.99915 * 25 23 21 27 27 H 1.48499 * 109.46853 * 209.99997 * 25 23 21 28 28 H 1.48494 * 109.47003 * 329.99933 * 25 23 21 29 29 H 1.09001 * 109.46852 * 270.16793 * 1 2 3 30 30 H 1.09004 * 109.46725 * 30.15941 * 1 2 3 31 31 H 1.08993 * 109.47485 * 150.16341 * 1 2 3 32 32 H 1.07997 * 126.77327 * 359.96712 * 3 2 1 33 33 H 1.08999 * 109.47376 * 330.02465 * 7 6 5 34 34 H 1.08998 * 109.47267 * 210.02154 * 7 6 5 35 35 H 1.00901 * 110.99825 * 56.04550 * 8 7 6 36 36 H 1.08998 * 109.46664 * 300.00279 * 11 9 8 37 37 H 1.08995 * 109.46897 * 59.99539 * 11 9 8 38 38 H 1.09001 * 109.47320 * 179.97438 * 11 9 8 39 39 H 1.08997 * 109.47394 * 304.99914 * 12 9 8 40 40 H 1.09004 * 109.47644 * 184.99986 * 12 9 8 41 41 H 1.09002 * 109.47153 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.47289 * 299.99953 * 15 13 12 43 43 H 1.09004 * 109.47261 * 59.99697 * 15 13 12 44 44 H 0.97012 * 120.00025 * 25.00061 * 16 13 12 45 45 H 1.08998 * 109.46823 * 299.99865 * 19 17 16 46 46 H 1.08996 * 109.47135 * 59.99371 * 19 17 16 47 47 H 0.96996 * 120.00809 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3411 1.0672 0.0000 4 8 3.5877 0.5745 -0.0053 5 7 3.5878 -0.6347 -0.0034 6 6 2.3775 -1.1141 0.0037 7 6 1.9826 -2.5684 0.0074 8 7 1.8612 -3.0392 1.3936 9 6 1.4759 -4.4561 1.4365 10 1 0.8016 -4.6746 0.6084 11 6 2.7273 -5.3287 1.3190 12 6 0.7699 -4.7528 2.7610 13 6 -0.5455 -3.9738 2.8234 14 1 -0.3478 -2.9137 2.6643 15 6 -1.1907 -4.1716 4.1965 16 7 -1.4528 -4.4630 1.7825 17 6 -2.4208 -3.6590 1.3000 18 8 -2.5412 -2.5306 1.7279 19 6 -3.3546 -4.1625 0.2295 20 16 -4.5338 -2.8595 -0.2041 21 6 -5.4732 -3.6956 -1.4383 22 1 -5.2306 -4.7138 -1.7041 23 6 -6.5258 -3.0459 -2.0679 24 7 -7.2279 -3.6706 -2.9895 25 14 -6.9459 -1.2849 -1.6075 26 1 -6.1793 -0.3511 -2.4710 27 1 -8.4005 -1.0565 -1.8005 28 1 -6.5920 -1.0473 -0.1850 29 1 -0.3633 0.0030 1.0277 30 1 -0.3633 0.8886 -0.5163 31 1 -0.3634 -0.8914 -0.5112 32 1 2.0577 2.1093 -0.0005 33 1 2.7436 -3.1529 -0.5095 34 1 1.0259 -2.6864 -0.5014 35 1 1.2081 -2.4714 1.9125 36 1 3.2303 -5.1172 0.3755 37 1 3.4015 -5.1102 2.1471 38 1 2.4415 -6.3801 1.3513 39 1 1.4104 -4.4514 3.5897 40 1 0.5632 -5.8208 2.8314 41 1 -2.1276 -3.6162 4.2412 42 1 -1.3884 -5.2316 4.3558 43 1 -0.5156 -3.8075 4.9711 44 1 -1.3568 -5.3657 1.4405 45 1 -2.7789 -4.4405 -0.6533 46 1 -3.8956 -5.0333 0.5995 47 1 -7.9633 -3.2165 -3.4299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133736135.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:59 Heat of formation + Delta-G solvation = -13.921593 kcal Electronic energy + Delta-G solvation = -27888.573357 eV Core-core repulsion = 24006.501279 eV Total energy + Delta-G solvation = -3882.072079 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.93226 -40.93063 -38.96293 -36.79887 -35.48445 -34.67202 -33.55651 -32.76612 -31.52495 -30.01153 -29.05799 -27.91975 -27.84545 -26.69609 -22.99726 -22.58212 -22.17168 -21.79353 -21.17756 -19.88717 -18.58850 -18.47994 -17.96076 -17.35018 -17.12674 -17.04887 -16.38201 -16.36703 -15.71892 -15.43162 -15.34833 -14.97109 -14.75060 -14.51193 -14.30727 -14.17231 -14.00188 -13.72081 -13.57373 -13.40136 -13.34268 -13.22665 -13.12904 -13.00392 -12.86979 -12.69871 -12.60023 -12.32633 -12.01012 -11.91138 -11.85022 -11.53883 -11.16946 -11.00418 -10.91526 -10.52831 -10.29572 -10.12406 -9.51852 -8.97638 -8.51508 -6.21624 0.56662 1.00324 1.15175 1.31162 1.46864 1.56989 1.60963 2.23576 2.28505 2.39433 2.72720 2.87088 3.02539 3.24439 3.57584 3.64599 3.83237 3.92656 3.96038 4.08632 4.16480 4.22773 4.30578 4.39367 4.47091 4.47259 4.56519 4.61028 4.68997 4.76864 4.77547 4.81337 4.86490 4.90732 4.92406 4.98093 5.04734 5.18859 5.27932 5.30894 5.41234 5.53617 5.70427 5.93297 6.11488 6.25073 6.50545 6.93792 7.23709 7.30715 8.61115 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009717 B = 0.003339 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.998306 B = 8383.530471 C =10178.377289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.212 4.212 3 C -0.048 4.048 4 O 0.094 5.906 5 N -0.379 5.379 6 C 0.009 3.991 7 C 0.142 3.858 8 N -0.679 5.679 9 C 0.081 3.919 10 H 0.046 0.954 11 C -0.136 4.136 12 C -0.117 4.117 13 C 0.140 3.860 14 H 0.067 0.933 15 C -0.159 4.159 16 N -0.708 5.708 17 C 0.537 3.463 18 O -0.554 6.554 19 C -0.115 4.115 20 S -0.165 6.165 21 C -0.531 4.531 22 H 0.059 0.941 23 C 0.046 3.954 24 N -0.919 5.919 25 Si 0.914 3.086 26 H -0.261 1.261 27 H -0.262 1.262 28 H -0.235 1.235 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.257 0.743 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.340 0.660 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.034 0.966 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.414 0.586 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.020 1.050 11.689 24.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.216 4.216 3 C -0.129 4.129 4 O 0.028 5.972 5 N -0.083 5.083 6 C -0.150 4.150 7 C 0.012 3.988 8 N -0.314 5.314 9 C -0.028 4.028 10 H 0.064 0.936 11 C -0.194 4.194 12 C -0.155 4.155 13 C 0.036 3.964 14 H 0.085 0.915 15 C -0.217 4.217 16 N -0.363 5.363 17 C 0.322 3.678 18 O -0.431 6.431 19 C -0.266 4.266 20 S 0.061 5.939 21 C -0.679 4.679 22 H 0.078 0.922 23 C -0.160 4.160 24 N -0.557 5.557 25 Si 0.736 3.264 26 H -0.185 1.185 27 H -0.186 1.186 28 H -0.158 1.158 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.273 0.727 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.160 0.840 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.053 0.947 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.250 0.750 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 22.598 2.198 12.336 25.840 hybrid contribution -2.309 -0.950 -1.419 2.872 sum 20.289 1.248 10.917 23.074 Atomic orbital electron populations 1.20020 0.86701 1.03406 1.02739 1.21583 0.99006 0.92058 1.08949 1.26496 0.81747 1.02527 1.02131 1.84776 1.30164 1.15124 1.67099 1.73818 1.22929 0.91986 1.19597 1.23572 0.88761 0.98819 1.03844 1.20097 1.00201 0.86976 0.91480 1.60643 1.55250 1.04101 1.11366 1.21639 0.96317 0.87189 0.97678 0.93603 1.21765 0.96800 0.99045 1.01742 1.22058 0.93503 1.02058 0.97861 1.21069 0.89200 0.98863 0.87303 0.91529 1.22122 1.00727 1.02724 0.96119 1.45909 1.32128 1.17418 1.40809 1.19847 0.80904 0.85226 0.81822 1.90683 1.71593 1.20463 1.60410 1.23291 0.99455 1.02749 1.01068 1.84608 1.37091 1.22053 1.50115 1.22499 1.19056 1.02346 1.23969 0.92249 1.25573 0.94510 1.02279 0.93597 1.70018 1.20648 1.39472 1.25570 0.85872 0.79004 0.79839 0.81705 1.18537 1.18594 1.15829 0.91154 0.89436 0.92720 0.72676 0.89545 0.93290 0.83959 0.93775 0.92173 0.90570 0.88402 0.87913 0.94657 0.90899 0.90042 0.74958 0.87411 0.87322 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.58 10.37 71.24 0.74 -0.84 16 2 C -0.21 -4.58 6.32 -19.73 -0.12 -4.71 16 3 C -0.05 -0.81 12.26 67.18 0.82 0.01 16 4 O 0.09 2.07 11.20 71.66 0.80 2.87 16 5 N -0.38 -9.89 12.07 -49.55 -0.60 -10.49 16 6 C 0.01 0.22 6.84 43.58 0.30 0.52 16 7 C 0.14 3.13 5.99 85.56 0.51 3.64 16 8 N -0.68 -13.19 6.30 -495.58 -3.12 -16.31 16 9 C 0.08 1.21 2.59 44.92 0.12 1.32 16 10 H 0.05 0.75 7.28 -2.39 -0.02 0.73 16 11 C -0.14 -1.81 9.42 71.98 0.68 -1.14 16 12 C -0.12 -1.36 4.34 30.60 0.13 -1.22 16 13 C 0.14 2.43 2.48 44.99 0.11 2.54 16 14 H 0.07 1.47 5.72 -2.39 -0.01 1.46 16 15 C -0.16 -2.68 9.48 71.98 0.68 -2.00 16 16 N -0.71 -14.25 4.45 -442.55 -1.97 -16.22 16 17 C 0.54 16.53 7.81 87.66 0.68 17.21 16 18 O -0.55 -21.11 15.52 -3.02 -0.05 -21.16 16 19 C -0.11 -4.05 6.16 71.24 0.44 -3.62 16 20 S -0.17 -7.96 18.55 -56.49 -1.05 -9.01 16 21 C -0.53 -30.25 10.04 67.95 0.68 -29.57 16 22 H 0.06 3.59 8.03 -2.91 -0.02 3.57 16 23 C 0.05 2.63 5.50 84.86 0.47 3.10 16 24 N -0.92 -55.38 13.97 21.65 0.30 -55.08 16 25 Si 0.91 43.89 27.74 68.60 1.90 45.80 16 26 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.23 -11.15 6.74 99.48 0.67 -10.48 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.05 1.40 7.65 -2.39 -0.02 1.39 16 32 H 0.26 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.09 1.89 7.44 -2.39 -0.02 1.87 16 34 H 0.05 1.13 7.56 -2.39 -0.02 1.11 16 35 H 0.34 7.10 6.40 -89.69 -0.57 6.53 16 36 H 0.04 0.68 7.45 -2.39 -0.02 0.67 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.41 5.99 8.60 -92.70 -0.80 5.19 16 45 H 0.11 3.54 8.14 -2.40 -0.02 3.52 16 46 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16 47 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -74.03 402.43 2.05 -71.98 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -0.42 Total: 22.35 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 6.24 Total: -14.73 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -5.39 Total: -98.10 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.76 Total: -18.28 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.90 Total: 45.80 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.05 Total: -9.01 kcal Total: -74.03 2.05 -71.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133736135.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.059 kcal (2) G-P(sol) polarization free energy of solvation -74.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds