Wall clock time and date at job start Sat Apr 11 2020 06:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00116 * 2 1 4 4 C 1.50693 * 109.47407 * 179.97438 * 3 2 1 5 5 N 1.29434 * 124.80566 * 90.02243 * 4 3 2 6 6 C 1.30939 * 117.36344 * 179.73969 * 5 4 3 7 7 C 1.50707 * 122.90043 * 179.97438 * 6 5 4 8 8 C 1.35655 * 114.19519 * 0.02562 * 6 5 4 9 9 C 1.46682 * 126.13367 * 179.97438 * 8 6 5 10 10 O 1.21696 * 119.99892 * 0.02562 * 9 8 6 11 11 N 1.34771 * 120.00484 * 179.97438 * 9 8 6 12 12 C 1.46498 * 120.00218 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47448 * 35.00260 * 12 11 9 14 14 C 1.53005 * 109.47033 * 275.00248 * 12 11 9 15 15 C 1.52999 * 109.47096 * 155.00197 * 12 11 9 16 16 C 1.52996 * 109.47376 * 294.99845 * 15 12 11 17 17 H 1.09004 * 109.46752 * 55.00393 * 16 15 12 18 18 C 1.52996 * 109.47501 * 174.99902 * 16 15 12 19 19 N 1.46496 * 109.47218 * 295.00062 * 16 15 12 20 20 C 1.36935 * 119.99975 * 154.99786 * 19 16 15 21 21 H 1.07998 * 120.00382 * 0.02562 * 20 19 16 22 22 C 1.38817 * 120.00063 * 180.02562 * 20 19 16 23 23 N 1.31621 * 119.99805 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00252 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46901 * 90.00054 * 24 22 20 26 26 H 1.48491 * 109.47371 * 210.00448 * 24 22 20 27 27 H 1.48508 * 109.47017 * 330.00149 * 24 22 20 28 28 S 1.70953 * 124.80453 * 269.72481 * 4 3 2 29 29 H 1.09007 * 109.47044 * 60.00424 * 1 2 3 30 30 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47317 * 300.00303 * 1 2 3 32 32 H 1.09009 * 109.46981 * 59.99414 * 3 2 1 33 33 H 1.08997 * 109.47074 * 300.00176 * 3 2 1 34 34 H 1.09005 * 109.46722 * 90.02370 * 7 6 5 35 35 H 1.08993 * 109.46936 * 210.02306 * 7 6 5 36 36 H 1.08994 * 109.46935 * 330.02384 * 7 6 5 37 37 H 0.97004 * 119.99773 * 0.02562 * 11 9 8 38 38 H 1.08996 * 109.46968 * 59.99840 * 14 12 11 39 39 H 1.09007 * 109.46692 * 180.02562 * 14 12 11 40 40 H 1.09006 * 109.46961 * 299.99597 * 14 12 11 41 41 H 1.09008 * 109.47443 * 55.00467 * 15 12 11 42 42 H 1.09002 * 109.46955 * 174.99600 * 15 12 11 43 43 H 1.09007 * 109.47122 * 300.00545 * 18 16 15 44 44 H 1.09004 * 109.46962 * 59.99726 * 18 16 15 45 45 H 1.08999 * 109.47614 * 180.02562 * 18 16 15 46 46 H 0.97005 * 120.00048 * 334.99908 * 19 16 15 47 47 H 0.96997 * 120.00102 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2495 1.1284 -1.0618 6 6 5.5441 1.0311 -0.8917 7 6 6.5172 0.9545 -2.0399 8 6 5.9337 1.0043 0.4075 9 6 7.3133 0.9007 0.8948 10 8 8.2346 0.8297 0.1029 11 7 7.5607 0.8852 2.2195 12 6 8.9387 0.7823 2.7061 13 1 9.6035 1.3216 2.0315 14 6 9.3518 -0.6899 2.7603 15 6 9.0314 1.3899 4.1072 16 6 8.7394 2.8899 4.0330 17 1 7.7734 3.0487 3.5535 18 6 8.7091 3.4743 5.4466 19 7 9.7869 3.5533 3.2527 20 6 9.5212 4.7365 2.6165 21 1 8.5396 5.1807 2.6903 22 6 10.5136 5.3648 1.8767 23 7 11.7098 4.8232 1.7864 24 14 10.1510 6.9784 1.0082 25 1 10.4589 8.1105 1.9185 26 1 10.9896 7.0827 -0.2128 27 1 8.7160 7.0247 0.6286 28 16 4.4852 1.1164 1.4047 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8463 -0.8899 34 1 6.8294 1.9608 -2.3193 35 1 7.3891 0.3739 -1.7390 36 1 6.0367 0.4734 -2.8918 37 1 6.8264 0.9421 2.8507 38 1 9.2857 -1.1228 1.7622 39 1 10.3770 -0.7665 3.1229 40 1 8.6870 -1.2293 3.4351 41 1 8.3028 0.9098 4.7606 42 1 10.0342 1.2342 4.5051 43 1 7.9297 2.9806 6.0272 44 1 9.6750 3.3154 5.9262 45 1 8.5006 4.5428 5.3938 46 1 10.6687 3.1545 3.1868 47 1 12.4031 5.2620 1.2692 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136047245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:06 Heat of formation + Delta-G solvation = -32.453381 kcal Electronic energy + Delta-G solvation = -27862.708316 eV Core-core repulsion = 23979.832639 eV Total energy + Delta-G solvation = -3882.875677 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.42304 -39.27068 -38.15108 -36.80447 -34.49588 -32.56892 -32.16868 -30.89729 -29.02816 -28.60498 -27.99042 -26.42804 -26.31597 -23.62289 -23.01738 -22.49494 -20.67523 -19.79544 -19.50501 -18.17211 -17.28004 -17.00742 -16.85443 -16.18871 -15.86649 -15.44182 -15.27188 -14.72151 -14.21381 -14.08102 -13.93886 -13.82371 -13.57678 -13.12933 -12.99042 -12.77444 -12.70679 -12.49228 -12.37659 -12.14055 -11.97719 -11.81870 -11.73368 -11.59486 -11.39383 -11.04786 -10.82010 -10.60669 -10.43601 -10.28317 -10.21766 -10.00300 -9.89267 -9.61914 -9.60601 -9.58345 -8.93762 -8.85892 -8.73058 -6.90116 -5.70833 -2.98722 0.08899 1.00873 1.43184 2.31617 3.23591 3.27590 3.43290 3.46676 3.51980 3.53704 3.97420 4.50008 4.64175 4.82635 4.87027 4.89681 4.93926 4.99228 5.06080 5.18098 5.25531 5.39883 5.48063 5.63200 5.68587 5.73044 5.79966 5.87817 5.91696 5.93781 6.01560 6.12669 6.28201 6.34487 6.39010 6.43888 6.56687 6.57109 6.69255 6.77995 6.90942 7.07622 7.47186 7.68328 7.74394 8.38739 8.47553 9.58940 10.15867 10.50256 11.51873 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010828 B = 0.003283 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.233698 B = 8526.968290 C = 9207.862802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.139 3.861 4 C 0.047 3.953 5 N -0.457 5.457 6 C 0.142 3.858 7 C -0.089 4.089 8 C -0.279 4.279 9 C 0.597 3.403 10 O -0.511 6.511 11 N -0.709 5.709 12 C 0.145 3.855 13 H 0.109 0.891 14 C -0.161 4.161 15 C -0.132 4.132 16 C 0.171 3.829 17 H 0.044 0.956 18 C -0.165 4.165 19 N -0.720 5.720 20 C -0.234 4.234 21 H 0.066 0.934 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.902 3.098 25 H -0.291 1.291 26 H -0.291 1.291 27 H -0.284 1.284 28 S 0.183 5.817 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.391 0.609 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.034 0.966 44 H 0.046 0.954 45 H 0.052 0.948 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.119 -12.143 1.291 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.060 3.940 4 C -0.229 4.229 5 N -0.174 5.174 6 C 0.005 3.995 7 C -0.148 4.148 8 C -0.404 4.404 9 C 0.381 3.619 10 O -0.388 6.388 11 N -0.360 5.360 12 C 0.041 3.959 13 H 0.127 0.873 14 C -0.220 4.220 15 C -0.170 4.170 16 C 0.061 3.939 17 H 0.062 0.938 18 C -0.225 4.225 19 N -0.361 5.361 20 C -0.365 4.365 21 H 0.084 0.916 22 C -0.207 4.207 23 N -0.579 5.579 24 Si 0.733 3.267 25 H -0.219 1.219 26 H -0.218 1.218 27 H -0.209 1.209 28 S 0.440 5.560 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.224 0.776 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.914 -12.172 1.256 23.373 hybrid contribution 0.016 1.171 -0.793 1.414 sum -19.897 -11.002 0.463 22.741 Atomic orbital electron populations 1.22814 0.79922 1.03342 1.00412 1.87964 1.20356 1.26231 1.95545 1.20822 0.84347 0.86107 1.02772 1.26719 1.00331 1.04057 0.91778 1.66001 1.04673 1.15358 1.31326 1.20662 0.89604 0.95352 0.93932 1.20681 0.96678 1.04232 0.93215 1.25721 0.98419 1.19003 0.97220 1.16557 0.85517 0.76900 0.82937 1.90818 1.43837 1.49380 1.54745 1.45873 1.09805 1.74585 1.05710 1.21106 0.82263 0.95616 0.96912 0.87261 1.22194 1.01457 0.96413 1.01912 1.22186 1.02567 0.97493 0.94798 1.20219 0.93465 0.89135 0.91081 0.93789 1.22457 0.99846 1.01370 0.98871 1.42386 1.10628 1.24837 1.58296 1.19137 0.96413 0.97784 1.23181 0.91590 1.24686 0.95962 0.99012 1.01081 1.69642 1.02698 1.39978 1.45599 0.86265 0.77216 0.84014 0.79162 1.21872 1.21775 1.20938 1.83693 0.96634 1.64704 1.10989 0.93549 0.89098 0.93606 0.90559 0.89753 0.89795 0.87957 0.90933 0.77557 0.92398 0.91497 0.93098 0.92020 0.90349 0.94723 0.93474 0.92892 0.78306 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.74 10.69 -35.23 -0.38 -4.12 16 3 C 0.14 1.25 6.51 36.00 0.23 1.49 16 4 C 0.05 0.57 7.02 -13.29 -0.09 0.48 16 5 N -0.46 -6.70 10.50 -7.70 -0.08 -6.78 16 6 C 0.14 2.20 6.79 -83.89 -0.57 1.64 16 7 C -0.09 -1.30 9.70 36.01 0.35 -0.95 16 8 C -0.28 -4.29 6.48 -37.10 -0.24 -4.53 16 9 C 0.60 10.36 7.74 -12.85 -0.10 10.26 16 10 O -0.51 -10.49 13.93 5.19 0.07 -10.42 16 11 N -0.71 -10.81 4.44 -55.11 -0.24 -11.05 16 12 C 0.14 2.33 2.52 -67.93 -0.17 2.16 16 13 H 0.11 2.29 7.05 -51.93 -0.37 1.92 16 14 C -0.16 -2.19 9.48 37.16 0.35 -1.84 16 15 C -0.13 -1.99 4.29 -26.73 -0.11 -2.10 16 16 C 0.17 3.22 2.84 -67.94 -0.19 3.03 16 17 H 0.04 0.86 7.56 -51.93 -0.39 0.46 16 18 C -0.17 -2.86 9.49 37.16 0.35 -2.51 16 19 N -0.72 -17.54 4.49 -53.43 -0.24 -17.78 16 20 C -0.23 -6.49 9.93 -15.06 -0.15 -6.64 16 21 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 24 Si 0.90 23.00 29.55 -169.99 -5.02 17.98 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 27 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 28 S 0.18 2.13 22.31 -107.50 -2.40 -0.27 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.10 1.60 6.01 -51.93 -0.31 1.29 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.39 4.97 7.79 -40.82 -0.32 4.65 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.38 10.00 7.80 -40.82 -0.32 9.69 16 47 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 404.06 15.07 6.09 6.09 Total: -1.00 -34.09 404.06 -8.40 -42.48 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -7.59 Total: 10.20 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 0.67 Total: 1.36 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: 0.16 Total: -63.30 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.30 Total: -14.53 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.40 Total: -0.27 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.09 -8.40 -42.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136047245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.032 kcal (2) G-P(sol) polarization free energy of solvation -34.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds