Wall clock time and date at job start Sat Apr 11 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38675 * 119.27589 * 2 1 4 4 C 1.38013 * 119.62859 * 179.97438 * 3 2 1 5 5 C 1.41003 * 118.27873 * 359.75059 * 4 3 2 6 6 C 1.41015 * 120.70814 * 180.24675 * 5 4 3 7 7 H 1.08005 * 120.00291 * 152.66083 * 6 5 4 8 8 C 1.39948 * 120.00098 * 332.66733 * 6 5 4 9 9 N 1.30865 * 120.00305 * 160.46210 * 8 6 5 10 10 Si 1.86800 * 119.99553 * 340.46341 * 8 6 5 11 11 H 1.48498 * 109.47238 * 91.13211 * 10 8 6 12 12 H 1.48509 * 109.47195 * 211.13259 * 10 8 6 13 13 H 1.48498 * 109.47595 * 331.13222 * 10 8 6 14 14 C 1.41704 * 118.58667 * 0.48748 * 5 4 3 15 15 N 1.38098 * 119.90596 * 179.77449 * 14 5 4 16 16 C 1.46958 * 110.99904 * 142.93601 * 15 14 5 17 17 C 1.53051 * 109.36113 * 183.19219 * 16 15 14 18 18 N 1.46948 * 109.36566 * 301.59524 * 17 16 15 19 19 C 1.38644 * 111.00185 * 183.19150 * 18 17 16 20 20 N 1.32438 * 119.15586 * 180.02562 * 19 18 17 21 21 C 1.32294 * 120.79442 * 179.97438 * 20 19 18 22 22 C 1.39019 * 119.13675 * 0.02562 * 21 20 19 23 23 O 1.36025 * 120.77630 * 180.02562 * 22 21 20 24 24 C 1.39018 * 118.44788 * 359.97438 * 22 21 20 25 25 N 1.32301 * 119.13336 * 0.02562 * 24 22 21 26 26 C 1.46958 * 110.87863 * 59.32509 * 18 17 16 27 27 C 1.46954 * 110.99974 * 266.73470 * 15 14 5 28 28 N 1.31971 * 119.27554 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46989 * 270.01994 * 1 2 3 30 30 H 1.09000 * 109.47064 * 30.02101 * 1 2 3 31 31 H 1.09001 * 109.47196 * 150.01688 * 1 2 3 32 32 H 1.08004 * 120.19090 * 0.02562 * 3 2 1 33 33 H 1.08000 * 120.85836 * 180.02562 * 4 3 2 34 34 H 0.97006 * 119.99873 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.49214 * 63.22216 * 16 15 14 36 36 H 1.09005 * 109.48968 * 303.15544 * 16 15 14 37 37 H 1.09006 * 109.48506 * 181.63315 * 17 16 15 38 38 H 1.09004 * 109.50902 * 61.58012 * 17 16 15 39 39 H 1.07997 * 120.43190 * 179.97438 * 21 20 19 40 40 H 0.96706 * 113.99520 * 269.97731 * 23 22 21 41 41 H 1.08001 * 120.43171 * 180.02562 * 24 22 21 42 42 H 1.08995 * 109.49214 * 60.64763 * 26 18 17 43 43 H 1.09005 * 109.48968 * 180.71435 * 26 18 17 44 44 H 1.08997 * 109.49421 * 296.77417 * 27 15 14 45 45 H 1.09006 * 109.48785 * 56.84698 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1852 1.2096 0.0000 4 6 3.5653 1.2181 0.0005 5 6 4.2409 -0.0195 0.0065 6 6 5.6502 -0.0706 0.0125 7 1 6.1580 -0.9193 0.4463 8 6 6.3908 0.9787 -0.5435 9 7 7.6481 1.1370 -0.2169 10 14 5.5845 2.1531 -1.7518 11 1 5.0146 3.3087 -1.0136 12 1 6.5984 2.6374 -2.7229 13 1 4.4997 1.4470 -2.4797 14 6 3.4737 -1.2108 0.0010 15 7 4.1074 -2.4379 0.0019 16 6 3.3726 -3.4095 0.8239 17 6 4.1469 -4.7290 0.8635 18 7 4.3255 -5.2306 -0.5061 19 6 4.9617 -6.4625 -0.5052 20 7 5.2049 -7.0639 -1.6598 21 6 5.8105 -8.2395 -1.6967 22 6 6.1914 -8.8425 -0.5034 23 8 6.8165 -10.0506 -0.5025 24 6 5.9195 -8.1814 0.6889 25 7 5.3105 -7.0075 0.6502 26 6 5.0603 -4.2590 -1.3281 27 6 4.2859 -2.9394 -1.3678 28 7 2.1524 -1.1512 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5136 32 1 1.6365 2.1399 0.0004 33 1 4.1135 2.1486 0.0010 34 1 8.1615 1.8641 -0.6027 35 1 2.3865 -3.5793 0.3917 36 1 3.2642 -3.0209 1.8365 37 1 3.5894 -5.4604 1.4488 38 1 5.1227 -4.5649 1.3208 39 1 6.0056 -8.7249 -2.6415 40 1 6.2136 -10.8053 -0.4567 41 1 6.2018 -8.6204 1.6345 42 1 6.0464 -4.0891 -0.8959 43 1 5.1687 -4.6476 -2.3407 44 1 3.3102 -3.1040 -1.8249 45 1 4.8434 -2.2081 -1.9531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157237410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:17 Heat of formation + Delta-G solvation = 76.591275 kcal Electronic energy + Delta-G solvation = -29504.992828 eV Core-core repulsion = 25523.694482 eV Total energy + Delta-G solvation = -3981.298346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45083 -39.60383 -38.43428 -37.35847 -34.95146 -34.16851 -33.96969 -31.72787 -30.90427 -30.59991 -29.45974 -27.98095 -26.36599 -25.14784 -23.79522 -22.98160 -22.92340 -21.73522 -20.49921 -19.57197 -18.74748 -17.95746 -17.93194 -17.43401 -16.24901 -15.89182 -15.70355 -15.07318 -14.85394 -14.68618 -14.47845 -14.36821 -13.88580 -13.76034 -13.60549 -13.32101 -13.18782 -12.87254 -12.36059 -12.10878 -12.01541 -11.97093 -11.70863 -11.61376 -11.56246 -11.22457 -11.08958 -10.88494 -10.83352 -10.76784 -10.63832 -10.27830 -10.00555 -9.95105 -9.48000 -9.11618 -8.58720 -8.40227 -8.27764 -7.90086 -7.31504 -7.10031 -4.52735 0.66152 0.89471 2.31765 2.58305 3.00139 3.10088 3.11671 3.20730 3.45906 3.78687 3.84188 3.98665 4.37905 4.39664 4.52552 4.62044 4.87004 5.17238 5.21498 5.39978 5.45921 5.57416 5.62928 5.73358 5.74183 5.81251 5.86714 5.98917 6.10221 6.11349 6.24773 6.27164 6.35736 6.39272 6.45860 6.53717 6.59854 6.64528 6.72068 6.82412 6.95193 7.03895 7.29382 7.31273 7.45706 7.65386 7.76298 8.00708 8.11994 8.28089 8.65714 8.67953 9.37309 9.89943 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014341 B = 0.003130 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.962000 B = 8944.809268 C =10208.266293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.014 4.014 3 C -0.119 4.119 4 C -0.218 4.218 5 C 0.065 3.935 6 C -0.401 4.401 7 H 0.106 0.894 8 C 0.081 3.919 9 N -0.790 5.790 10 Si 0.911 3.089 11 H -0.268 1.268 12 H -0.289 1.289 13 H -0.248 1.248 14 C 0.182 3.818 15 N -0.455 5.455 16 C 0.066 3.934 17 C 0.073 3.927 18 N -0.458 5.458 19 C 0.495 3.505 20 N -0.516 5.516 21 C 0.157 3.843 22 C -0.044 4.044 23 O -0.485 6.485 24 C 0.157 3.843 25 N -0.534 5.534 26 C 0.073 3.927 27 C 0.068 3.932 28 N -0.478 5.478 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.288 0.712 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.172 0.828 40 H 0.388 0.612 41 H 0.171 0.829 42 H 0.057 0.943 43 H 0.094 0.906 44 H 0.044 0.956 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.106 -14.336 -1.459 14.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.152 4.152 3 C -0.139 4.139 4 C -0.243 4.243 5 C 0.059 3.941 6 C -0.429 4.429 7 H 0.124 0.876 8 C -0.140 4.140 9 N -0.413 5.413 10 Si 0.738 3.262 11 H -0.194 1.194 12 H -0.216 1.216 13 H -0.172 1.172 14 C -0.054 4.054 15 N -0.176 5.176 16 C -0.063 4.063 17 C -0.054 4.054 18 N -0.177 5.177 19 C 0.140 3.860 20 N -0.235 5.235 21 C -0.013 4.013 22 C -0.095 4.095 23 O -0.291 6.291 24 C -0.012 4.012 25 N -0.255 5.255 26 C -0.053 4.053 27 C -0.059 4.059 28 N -0.190 5.190 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.189 0.811 40 H 0.243 0.757 41 H 0.188 0.812 42 H 0.075 0.925 43 H 0.112 0.888 44 H 0.062 0.938 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.278 -13.679 -1.498 14.145 hybrid contribution 0.212 0.171 -0.413 0.495 sum -3.065 -13.508 -1.911 13.983 Atomic orbital electron populations 1.20270 0.91419 1.00883 1.00464 1.20003 0.94682 0.87991 1.12516 1.21312 0.94671 0.97358 1.00535 1.21358 0.93831 0.97422 1.11709 1.18113 0.94347 0.90025 0.91648 1.19461 0.89375 1.04306 1.29768 0.87608 1.26300 0.94738 0.96737 0.96249 1.69717 1.09151 1.27896 1.34549 0.86375 0.79351 0.80326 0.80197 1.19382 1.21620 1.17164 1.19202 0.86363 0.89626 1.10165 1.59507 1.47001 1.00667 1.10425 1.22054 0.95791 0.89788 0.98640 1.22234 1.01463 0.96121 0.85558 1.58672 1.43398 1.00157 1.15488 1.21257 0.87230 0.93409 0.84113 1.68058 1.16112 1.10217 1.29132 1.23479 0.89240 0.89981 0.98560 1.20001 1.03694 0.91139 0.94680 1.84916 1.35105 1.13017 1.96083 1.23470 0.89646 0.89599 0.98482 1.68457 1.14949 1.12456 1.29632 1.22353 0.95448 0.90090 0.97391 1.22127 0.99330 0.93938 0.90544 1.66798 1.10623 1.30224 1.11305 0.93186 0.92927 0.92637 0.87999 0.87032 0.90168 0.92768 0.90235 0.89566 0.91934 0.81074 0.75698 0.81224 0.92454 0.88794 0.93802 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.15 36.01 0.37 -0.86 16 2 C -0.01 -0.31 6.79 -82.37 -0.56 -0.87 16 3 C -0.12 -2.54 9.69 -39.50 -0.38 -2.92 16 4 C -0.22 -5.11 7.42 -38.62 -0.29 -5.40 16 5 C 0.07 1.61 5.18 -106.47 -0.55 1.06 16 6 C -0.40 -10.25 9.19 -37.89 -0.35 -10.60 16 7 H 0.11 2.89 7.82 -52.48 -0.41 2.48 16 8 C 0.08 2.00 5.41 -17.32 -0.09 1.90 16 9 N -0.79 -19.91 13.93 55.55 0.77 -19.14 16 10 Si 0.91 19.83 24.56 -169.99 -4.18 15.66 16 11 H -0.27 -5.66 6.45 56.52 0.36 -5.30 16 12 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 13 H -0.25 -5.60 7.04 56.52 0.40 -5.21 16 14 C 0.18 4.21 5.62 -155.02 -0.87 3.34 16 15 N -0.45 -9.43 3.91 -172.51 -0.68 -10.10 16 16 C 0.07 1.20 5.13 -3.77 -0.02 1.18 16 17 C 0.07 1.19 4.77 -3.77 -0.02 1.17 16 18 N -0.46 -7.46 4.78 -175.19 -0.84 -8.30 16 19 C 0.49 7.55 7.18 -322.62 -2.32 5.23 16 20 N -0.52 -7.27 9.71 -13.79 -0.13 -7.40 16 21 C 0.16 1.68 11.26 -17.06 -0.19 1.49 16 22 C -0.04 -0.43 6.77 -39.00 -0.26 -0.70 16 23 O -0.48 -3.65 13.55 -19.82 -0.27 -3.91 16 24 C 0.16 1.69 11.26 -17.06 -0.19 1.50 16 25 N -0.53 -7.48 8.69 -13.79 -0.12 -7.60 16 26 C 0.07 1.21 5.46 -3.76 -0.02 1.19 16 27 C 0.07 1.29 5.54 -3.76 -0.02 1.27 16 28 N -0.48 -10.83 9.08 -8.11 -0.07 -10.91 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.10 1.88 8.06 -52.48 -0.42 1.45 16 33 H 0.11 2.58 4.46 -52.49 -0.23 2.34 16 34 H 0.29 6.57 8.30 -40.82 -0.34 6.23 16 35 H 0.05 1.05 7.70 -51.93 -0.40 0.65 16 36 H 0.08 1.48 8.13 -51.93 -0.42 1.06 16 37 H 0.09 1.29 7.80 -51.93 -0.41 0.89 16 38 H 0.06 1.07 8.03 -51.93 -0.42 0.65 16 39 H 0.17 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.39 0.98 9.07 45.56 0.41 1.39 16 41 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.09 1.45 7.64 -51.93 -0.40 1.05 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.09 1.80 8.13 -51.93 -0.42 1.38 16 LS Contribution 367.52 15.07 5.54 5.54 Total: -1.00 -29.80 367.52 -10.99 -40.78 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.25 Total: 7.41 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -5.77 Total: -2.01 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -1.07 Total: -63.46 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.27 Total: -3.91 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.18 Total: 15.66 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.80 -10.99 -40.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157237410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.376 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds