Wall clock time and date at job start Sat Apr 11 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38612 * 120.41312 * 2 1 4 4 C 1.38575 * 118.52292 * 180.02562 * 3 2 1 5 5 N 1.32307 * 119.17244 * 359.74139 * 4 3 2 6 6 C 1.32309 * 120.76397 * 0.50679 * 5 4 3 7 7 O 1.35455 * 119.20044 * 179.75825 * 6 5 4 8 8 C 1.42904 * 116.99804 * 359.73314 * 7 6 5 9 9 H 1.09004 * 109.50219 * 329.99879 * 8 7 6 10 10 C 1.53119 * 109.50521 * 209.92130 * 8 7 6 11 11 C 1.53120 * 109.16385 * 182.36471 * 10 8 7 12 12 C 1.53043 * 109.27695 * 57.65033 * 11 10 8 13 13 N 1.46849 * 109.52366 * 300.82420 * 12 11 10 14 14 C 1.38825 * 110.99619 * 185.84191 * 13 12 11 15 15 C 1.39961 * 119.96759 * 235.76979 * 14 13 12 16 16 N 1.32125 * 120.32071 * 179.75687 * 15 14 13 17 17 C 1.31937 * 120.26735 * 0.51615 * 16 15 14 18 18 C 1.40675 * 119.93527 * 359.73660 * 17 16 15 19 19 C 1.41272 * 120.15777 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00022 * 353.86492 * 19 18 17 21 21 C 1.40055 * 120.00093 * 173.85753 * 19 18 17 22 22 N 1.30729 * 119.99684 * 6.34830 * 21 19 18 23 23 Si 1.86799 * 120.00091 * 186.35215 * 21 19 18 24 24 H 1.48504 * 109.47118 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47592 * 119.99816 * 23 21 19 26 26 H 1.48500 * 109.46896 * 240.00356 * 23 21 19 27 27 N 1.32241 * 119.97252 * 56.04445 * 14 13 12 28 28 C 1.46845 * 111.19939 * 61.74300 * 13 12 11 29 29 N 1.32285 * 120.41105 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47592 * 269.98732 * 1 2 3 31 31 H 1.09003 * 109.46916 * 29.98612 * 1 2 3 32 32 H 1.09001 * 109.46936 * 149.98313 * 1 2 3 33 33 H 1.08004 * 120.73985 * 0.03048 * 3 2 1 34 34 H 1.07993 * 120.41087 * 179.97438 * 4 3 2 35 35 H 1.09002 * 109.51714 * 302.27026 * 10 8 7 36 36 H 1.09001 * 109.52503 * 62.39236 * 10 8 7 37 37 H 1.08996 * 109.50048 * 177.59246 * 11 10 8 38 38 H 1.09000 * 109.50085 * 297.67513 * 11 10 8 39 39 H 1.08996 * 109.45751 * 60.83639 * 12 11 10 40 40 H 1.08994 * 109.45986 * 180.80536 * 12 11 10 41 41 H 1.08002 * 119.84088 * 0.02562 * 15 14 13 42 42 H 1.07998 * 120.02797 * 179.75681 * 17 16 15 43 43 H 0.97006 * 119.99283 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.46254 * 178.24558 * 28 13 12 45 45 H 1.08994 * 109.46532 * 58.26914 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2087 1.1954 0.0000 4 6 3.5937 1.1497 -0.0005 5 7 4.2002 -0.0262 0.0042 6 6 3.5000 -1.1488 -0.0007 7 8 4.1535 -2.3353 -0.0006 8 6 5.5818 -2.2892 -0.0011 9 1 5.9166 -1.3882 -0.5152 10 6 6.1329 -3.5231 -0.7209 11 6 7.6629 -3.4960 -0.6654 12 6 8.1146 -3.4465 0.7960 13 7 7.5621 -2.2481 1.4402 14 6 8.0578 -2.1026 2.7287 15 6 7.1751 -2.0037 3.8104 16 7 7.6394 -1.8699 5.0401 17 6 8.9396 -1.8181 5.2581 18 6 9.8366 -1.9111 4.1785 19 6 11.2297 -1.8557 4.4064 20 1 11.6070 -1.6428 5.3958 21 6 12.1216 -2.0770 3.3495 22 7 11.6697 -2.2115 2.1302 23 14 13.9569 -2.1800 3.6822 24 1 14.2079 -1.9959 5.1342 25 1 14.4633 -3.5096 3.2566 26 1 14.6585 -1.1159 2.9202 27 7 9.3634 -2.0521 2.9325 28 6 6.0939 -2.2747 1.4410 29 7 2.1766 -1.1409 -0.0005 30 1 -0.3634 -0.0002 1.0276 31 1 -0.3633 0.8901 -0.5136 32 1 -0.3633 -0.8899 -0.5141 33 1 1.6876 2.1414 0.0005 34 1 4.1708 2.0625 -0.0010 35 1 5.7665 -4.4249 -0.2303 36 1 5.8050 -3.5153 -1.7604 37 1 8.0601 -4.3937 -1.1389 38 1 8.0304 -2.6144 -1.1905 39 1 7.7583 -4.3355 1.3165 40 1 9.2032 -3.4126 0.8387 41 1 6.1093 -2.0413 3.6395 42 1 9.3147 -1.7047 6.2644 43 1 12.2876 -2.3644 1.3982 44 1 5.7148 -1.3897 1.9520 45 1 5.7471 -3.1692 1.9584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158362962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:35 Heat of formation + Delta-G solvation = 74.175563 kcal Electronic energy + Delta-G solvation = -29364.388431 eV Core-core repulsion = 25382.985331 eV Total energy + Delta-G solvation = -3981.403100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.37499 -39.89760 -38.73742 -37.15992 -34.48911 -34.10408 -33.38354 -32.12456 -31.64986 -29.83352 -29.08503 -28.72602 -26.00896 -24.55426 -24.23239 -23.73909 -22.65487 -21.45499 -21.08350 -19.72729 -18.46930 -17.85247 -17.63078 -16.48588 -16.11862 -15.83519 -15.61793 -15.14297 -14.98794 -14.75356 -14.35404 -14.25924 -14.10069 -14.04483 -13.45947 -13.39833 -13.03009 -12.90784 -12.71105 -12.62275 -12.47394 -12.03991 -11.57726 -11.46370 -11.38496 -11.24404 -10.97527 -10.79736 -10.73917 -10.67199 -10.49559 -10.44007 -10.23485 -9.84524 -9.53728 -9.43390 -9.25722 -9.04151 -8.44952 -7.53924 -7.09168 -6.49318 -4.72173 0.86410 0.93803 2.41069 2.49155 2.93862 3.01579 3.05874 3.17759 3.62521 3.82767 3.91443 4.11408 4.29202 4.47495 4.63130 4.81771 4.88900 4.91153 4.95997 5.15506 5.16466 5.22072 5.36565 5.42332 5.58606 5.62293 5.68119 5.69852 5.79480 5.87358 5.92885 5.96960 5.99197 6.06172 6.18003 6.23962 6.42182 6.46421 6.54096 6.70646 6.78815 6.94963 7.02225 7.15325 7.44968 7.52369 7.86078 8.01048 8.05950 8.45234 8.67760 9.27993 9.85005 10.10911 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017799 B = 0.002731 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.749973 B =10249.651468 C =10909.400315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.210 3.790 3 C -0.276 4.276 4 C 0.192 3.808 5 N -0.563 5.563 6 C 0.509 3.491 7 O -0.283 6.283 8 C 0.098 3.902 9 H 0.103 0.897 10 C -0.116 4.116 11 C -0.111 4.111 12 C 0.063 3.937 13 N -0.463 5.463 14 C 0.293 3.707 15 C -0.159 4.159 16 N -0.416 5.416 17 C -0.085 4.085 18 C 0.227 3.773 19 C -0.410 4.410 20 H 0.092 0.908 21 C 0.066 3.934 22 N -0.704 5.704 23 Si 0.911 3.089 24 H -0.258 1.258 25 H -0.272 1.272 26 H -0.272 1.272 27 N -0.464 5.464 28 C 0.050 3.950 29 N -0.530 5.530 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.148 0.852 34 H 0.172 0.828 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.031 0.969 40 H 0.109 0.891 41 H 0.124 0.876 42 H 0.132 0.868 43 H 0.276 0.724 44 H 0.084 0.916 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.614 3.175 -9.502 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.063 3.937 3 C -0.298 4.298 4 C 0.027 3.973 5 N -0.292 5.292 6 C 0.207 3.793 7 O -0.183 6.183 8 C 0.041 3.959 9 H 0.121 0.879 10 C -0.154 4.154 11 C -0.149 4.149 12 C -0.063 4.063 13 N -0.183 5.183 14 C 0.052 3.948 15 C -0.320 4.320 16 N -0.127 5.127 17 C -0.255 4.255 18 C 0.099 3.901 19 C -0.442 4.442 20 H 0.110 0.890 21 C -0.161 4.161 22 N -0.324 5.324 23 Si 0.735 3.265 24 H -0.182 1.182 25 H -0.197 1.197 26 H -0.197 1.197 27 N -0.185 5.185 28 C -0.079 4.079 29 N -0.257 5.257 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.166 0.834 34 H 0.189 0.811 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.127 0.873 41 H 0.141 0.859 42 H 0.150 0.850 43 H 0.087 0.913 44 H 0.102 0.898 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.977 2.301 -10.070 16.586 hybrid contribution 0.257 0.418 0.588 0.766 sum -12.720 2.719 -9.482 16.097 Atomic orbital electron populations 1.20803 0.87443 1.04124 1.03921 1.21546 0.97279 0.87000 0.87855 1.22547 0.96424 1.00389 1.10471 1.23017 0.92016 0.95092 0.87218 1.68125 1.41502 0.98975 1.20645 1.20710 0.85856 0.85087 0.87637 1.86115 1.22695 1.23476 1.85998 1.22540 0.74541 1.01480 0.97364 0.87876 1.21740 0.96429 0.96768 1.00457 1.21589 0.93075 1.02986 0.97252 1.22177 1.02708 0.88790 0.92614 1.58098 1.04998 1.38335 1.16836 1.20556 0.92518 0.94390 0.87378 1.22579 0.98435 1.21847 0.89130 1.67563 1.16219 1.06296 1.22628 1.23060 0.89091 1.14148 0.99250 1.19237 0.94587 0.89269 0.86973 1.19666 0.89101 1.38993 0.96478 0.89020 1.26145 1.01575 0.93728 0.94636 1.70111 1.36332 1.26355 0.99623 0.86198 0.81439 0.78715 0.80133 1.18185 1.19688 1.19709 1.69169 1.08409 1.19215 1.21747 1.22426 0.87896 1.02266 0.95317 1.67402 1.06662 1.31241 1.20428 0.89404 0.89854 0.89797 0.83395 0.81084 0.90984 0.91026 0.90416 0.90528 0.95026 0.87257 0.85874 0.85024 0.91319 0.89772 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.22 36.01 0.37 -0.32 16 2 C 0.21 2.24 6.82 -82.26 -0.56 1.68 16 3 C -0.28 -2.51 9.85 -39.32 -0.39 -2.90 16 4 C 0.19 2.10 11.30 -17.22 -0.19 1.91 16 5 N -0.56 -8.28 8.67 -14.74 -0.13 -8.40 16 6 C 0.51 7.97 8.46 -91.24 -0.77 7.20 16 7 O -0.28 -4.58 9.85 -18.06 -0.18 -4.76 16 8 C 0.10 1.53 2.52 -26.65 -0.07 1.47 16 9 H 0.10 1.69 6.96 -51.93 -0.36 1.33 16 10 C -0.12 -1.57 5.65 -26.61 -0.15 -1.72 16 11 C -0.11 -1.58 6.09 -26.65 -0.16 -1.74 16 12 C 0.06 1.18 5.34 -3.83 -0.02 1.16 16 13 N -0.46 -9.65 4.73 -173.07 -0.82 -10.46 16 14 C 0.29 7.26 6.45 -155.02 -1.00 6.26 16 15 C -0.16 -3.94 10.00 -16.78 -0.17 -4.11 16 16 N -0.42 -10.76 10.47 -12.11 -0.13 -10.88 16 17 C -0.09 -2.20 10.97 -16.59 -0.18 -2.38 16 18 C 0.23 6.15 6.54 -84.84 -0.55 5.59 16 19 C -0.41 -10.51 9.15 -37.75 -0.35 -10.85 16 20 H 0.09 2.17 7.86 -52.49 -0.41 1.76 16 21 C 0.07 1.59 5.49 -17.34 -0.10 1.50 16 22 N -0.70 -17.64 11.51 55.55 0.64 -17.01 16 23 Si 0.91 17.65 29.56 -169.99 -5.03 12.63 16 24 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 25 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 26 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 27 N -0.46 -12.53 7.36 -10.14 -0.07 -12.61 16 28 C 0.05 0.91 3.76 -3.83 -0.01 0.89 16 29 N -0.53 -7.64 10.40 -10.94 -0.11 -7.76 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.15 0.82 8.06 -52.48 -0.42 0.39 16 34 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.11 2.33 7.60 -51.93 -0.39 1.94 16 41 H 0.12 2.81 5.78 -52.49 -0.30 2.51 16 42 H 0.13 3.07 8.06 -52.49 -0.42 2.65 16 43 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 44 H 0.08 1.65 6.96 -51.93 -0.36 1.29 16 45 H 0.05 0.88 7.72 -51.93 -0.40 0.48 16 LS Contribution 372.90 15.07 5.62 5.62 Total: -1.00 -32.03 372.90 -10.53 -42.55 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -6.02 Total: 7.45 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -4.31 Total: 3.63 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -0.62 Total: -67.12 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.18 Total: -4.76 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.03 -10.53 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158362962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.730 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds