Wall clock time and date at job start Sat Apr 11 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38612 * 120.41312 * 2 1 4 4 C 1.38575 * 118.52292 * 180.02562 * 3 2 1 5 5 N 1.32307 * 119.17244 * 359.74139 * 4 3 2 6 6 C 1.32309 * 120.76397 * 0.50679 * 5 4 3 7 7 O 1.35455 * 119.20044 * 179.75825 * 6 5 4 8 8 C 1.42904 * 116.99804 * 359.73314 * 7 6 5 9 9 H 1.09004 * 109.50219 * 329.99879 * 8 7 6 10 10 C 1.53119 * 109.50521 * 209.92130 * 8 7 6 11 11 C 1.53120 * 109.16385 * 182.36471 * 10 8 7 12 12 C 1.53043 * 109.27695 * 57.65033 * 11 10 8 13 13 N 1.46849 * 109.52366 * 300.82420 * 12 11 10 14 14 C 1.38825 * 110.99619 * 185.84191 * 13 12 11 15 15 C 1.39961 * 119.96759 * 235.76979 * 14 13 12 16 16 N 1.32125 * 120.32071 * 179.75687 * 15 14 13 17 17 C 1.31937 * 120.26735 * 0.51615 * 16 15 14 18 18 C 1.40675 * 119.93527 * 359.73660 * 17 16 15 19 19 C 1.41272 * 120.15777 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00022 * 353.86492 * 19 18 17 21 21 C 1.40055 * 120.00093 * 173.85753 * 19 18 17 22 22 N 1.30729 * 119.99684 * 6.34830 * 21 19 18 23 23 Si 1.86799 * 120.00091 * 186.35215 * 21 19 18 24 24 H 1.48504 * 109.47118 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47592 * 119.99816 * 23 21 19 26 26 H 1.48500 * 109.46896 * 240.00356 * 23 21 19 27 27 N 1.32241 * 119.97252 * 56.04445 * 14 13 12 28 28 C 1.46845 * 111.19939 * 61.74300 * 13 12 11 29 29 N 1.32285 * 120.41105 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47592 * 269.98732 * 1 2 3 31 31 H 1.09003 * 109.46916 * 29.98612 * 1 2 3 32 32 H 1.09001 * 109.46936 * 149.98313 * 1 2 3 33 33 H 1.08004 * 120.73985 * 0.03048 * 3 2 1 34 34 H 1.07993 * 120.41087 * 179.97438 * 4 3 2 35 35 H 1.09002 * 109.51714 * 302.27026 * 10 8 7 36 36 H 1.09001 * 109.52503 * 62.39236 * 10 8 7 37 37 H 1.08996 * 109.50048 * 177.59246 * 11 10 8 38 38 H 1.09000 * 109.50085 * 297.67513 * 11 10 8 39 39 H 1.08996 * 109.45751 * 60.83639 * 12 11 10 40 40 H 1.08994 * 109.45986 * 180.80536 * 12 11 10 41 41 H 1.08002 * 119.84088 * 0.02562 * 15 14 13 42 42 H 1.07998 * 120.02797 * 179.75681 * 17 16 15 43 43 H 0.97006 * 119.99283 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.46254 * 178.24558 * 28 13 12 45 45 H 1.08994 * 109.46532 * 58.26914 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2087 1.1954 0.0000 4 6 3.5937 1.1497 -0.0005 5 7 4.2002 -0.0262 0.0042 6 6 3.5000 -1.1488 -0.0007 7 8 4.1535 -2.3353 -0.0006 8 6 5.5818 -2.2892 -0.0011 9 1 5.9166 -1.3882 -0.5152 10 6 6.1329 -3.5231 -0.7209 11 6 7.6629 -3.4960 -0.6654 12 6 8.1146 -3.4465 0.7960 13 7 7.5621 -2.2481 1.4402 14 6 8.0578 -2.1026 2.7287 15 6 7.1751 -2.0037 3.8104 16 7 7.6394 -1.8699 5.0401 17 6 8.9396 -1.8181 5.2581 18 6 9.8366 -1.9111 4.1785 19 6 11.2297 -1.8557 4.4064 20 1 11.6070 -1.6428 5.3958 21 6 12.1216 -2.0770 3.3495 22 7 11.6697 -2.2115 2.1302 23 14 13.9569 -2.1800 3.6822 24 1 14.2079 -1.9959 5.1342 25 1 14.4633 -3.5096 3.2566 26 1 14.6585 -1.1159 2.9202 27 7 9.3634 -2.0521 2.9325 28 6 6.0939 -2.2747 1.4410 29 7 2.1766 -1.1409 -0.0005 30 1 -0.3634 -0.0002 1.0276 31 1 -0.3633 0.8901 -0.5136 32 1 -0.3633 -0.8899 -0.5141 33 1 1.6876 2.1414 0.0005 34 1 4.1708 2.0625 -0.0010 35 1 5.7665 -4.4249 -0.2303 36 1 5.8050 -3.5153 -1.7604 37 1 8.0601 -4.3937 -1.1389 38 1 8.0304 -2.6144 -1.1905 39 1 7.7583 -4.3355 1.3165 40 1 9.2032 -3.4126 0.8387 41 1 6.1093 -2.0413 3.6395 42 1 9.3147 -1.7047 6.2644 43 1 12.2876 -2.3644 1.3982 44 1 5.7148 -1.3897 1.9520 45 1 5.7471 -3.1692 1.9584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158362962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:34 Heat of formation + Delta-G solvation = 51.132984 kcal Electronic energy + Delta-G solvation = -29365.387632 eV Core-core repulsion = 25382.985331 eV Total energy + Delta-G solvation = -3982.402301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.36556 -41.50778 -40.18871 -38.60559 -35.96974 -35.36909 -34.88643 -33.51711 -33.07205 -31.26353 -30.84488 -29.42493 -27.89645 -26.03946 -25.45014 -24.81596 -24.08849 -23.02037 -22.67060 -21.07673 -19.61730 -19.45235 -18.90093 -18.06602 -17.51265 -17.28997 -16.85955 -16.65122 -16.57449 -15.99998 -15.71545 -15.57974 -15.44822 -15.22155 -14.70612 -14.62371 -14.32154 -14.18321 -13.96324 -13.79600 -13.38730 -13.23314 -13.18154 -13.10382 -13.00303 -12.61382 -12.33845 -12.13924 -12.03627 -11.93824 -11.89948 -11.74695 -11.64262 -11.49470 -11.44674 -11.20303 -10.32232 -10.21434 -9.97620 -9.48052 -8.92847 -8.36401 -6.69804 -0.02461 0.06737 0.57676 1.06578 1.34876 1.42642 1.52594 1.58913 2.19543 2.55261 2.70572 2.78171 3.04673 3.42936 3.53753 3.60197 3.63186 3.75905 3.89696 3.98118 4.05749 4.08036 4.15175 4.25156 4.31605 4.34297 4.46450 4.54107 4.58853 4.60874 4.70467 4.72299 4.76080 4.87467 4.88921 4.92846 5.05569 5.06705 5.12591 5.17414 5.23250 5.36284 5.55325 5.71229 5.86915 6.00627 6.15512 6.21001 6.53771 6.73149 7.04954 7.29758 7.89059 8.29750 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017799 B = 0.002731 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.749973 B =10249.651468 C =10909.400315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.194 3.806 3 C -0.254 4.254 4 C 0.173 3.827 5 N -0.591 5.591 6 C 0.481 3.519 7 O -0.295 6.295 8 C 0.110 3.890 9 H 0.095 0.905 10 C -0.109 4.109 11 C -0.098 4.098 12 C 0.066 3.934 13 N -0.467 5.467 14 C 0.290 3.710 15 C -0.176 4.176 16 N -0.426 5.426 17 C -0.104 4.104 18 C 0.194 3.806 19 C -0.427 4.427 20 H 0.105 0.895 21 C 0.021 3.979 22 N -0.732 5.732 23 Si 0.995 3.005 24 H -0.251 1.251 25 H -0.265 1.265 26 H -0.266 1.266 27 N -0.489 5.489 28 C 0.059 3.941 29 N -0.556 5.556 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.193 0.807 34 H 0.199 0.801 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.027 0.973 40 H 0.079 0.921 41 H 0.136 0.864 42 H 0.149 0.851 43 H 0.286 0.714 44 H 0.065 0.935 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.919 3.941 -10.779 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.049 3.951 3 C -0.275 4.275 4 C 0.010 3.990 5 N -0.321 5.321 6 C 0.179 3.821 7 O -0.196 6.196 8 C 0.053 3.947 9 H 0.113 0.887 10 C -0.147 4.147 11 C -0.136 4.136 12 C -0.060 4.060 13 N -0.187 5.187 14 C 0.047 3.953 15 C -0.336 4.336 16 N -0.137 5.137 17 C -0.274 4.274 18 C 0.067 3.933 19 C -0.459 4.459 20 H 0.123 0.877 21 C -0.203 4.203 22 N -0.353 5.353 23 Si 0.814 3.186 24 H -0.174 1.174 25 H -0.190 1.190 26 H -0.190 1.190 27 N -0.212 5.212 28 C -0.070 4.070 29 N -0.284 5.284 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.097 0.903 33 H 0.210 0.790 34 H 0.216 0.784 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.094 0.906 39 H 0.046 0.954 40 H 0.097 0.903 41 H 0.153 0.847 42 H 0.167 0.833 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.334 3.094 -11.353 17.783 hybrid contribution 0.236 0.297 0.954 1.027 sum -13.097 3.391 -10.398 17.064 Atomic orbital electron populations 1.20950 0.84445 1.05528 1.04938 1.22381 0.99167 0.86638 0.86943 1.23006 0.95641 1.01661 1.07221 1.23651 0.93528 0.94847 0.86986 1.68089 1.42495 0.99887 1.21677 1.20866 0.86487 0.85162 0.89615 1.86071 1.22379 1.24530 1.86618 1.22366 0.74890 1.02308 0.95160 0.88703 1.21730 0.95491 0.95710 1.01728 1.21546 0.93694 1.04485 0.93857 1.22174 1.00849 0.87566 0.95378 1.58148 1.06432 1.39230 1.14853 1.20913 0.92082 0.93302 0.88965 1.22823 0.99150 1.22509 0.89153 1.67546 1.16412 1.06529 1.23243 1.23301 0.89093 1.15134 0.99915 1.19719 0.95794 0.90215 0.87534 1.20122 0.89106 1.38862 0.97791 0.87713 1.27128 1.06540 0.92714 0.93928 1.70189 1.38623 1.25733 1.00737 0.84956 0.74438 0.78887 0.80290 1.17369 1.18993 1.19033 1.69186 1.09412 1.20608 1.21991 1.22352 0.86210 1.00937 0.97454 1.67436 1.06258 1.33385 1.21331 0.88351 0.86581 0.90269 0.79026 0.78406 0.90521 0.88398 0.87302 0.90608 0.95433 0.90251 0.84654 0.83346 0.90347 0.91688 0.94071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.22 71.24 0.73 -0.34 16 2 C 0.19 3.82 6.82 42.58 0.29 4.11 16 3 C -0.25 -3.97 9.85 22.44 0.22 -3.75 16 4 C 0.17 3.59 11.30 84.70 0.96 4.55 16 5 N -0.59 -17.55 8.67 -313.49 -2.72 -20.27 16 6 C 0.48 15.33 8.46 180.57 1.53 16.85 16 7 O -0.29 -9.76 9.85 -87.52 -0.86 -10.62 16 8 C 0.11 3.50 2.52 30.65 0.08 3.57 16 9 H 0.09 3.16 6.96 -2.38 -0.02 3.15 16 10 C -0.11 -2.82 5.65 30.67 0.17 -2.64 16 11 C -0.10 -2.68 6.09 30.65 0.19 -2.50 16 12 C 0.07 2.52 5.34 86.33 0.46 2.98 16 13 N -0.47 -20.20 4.73 -701.47 -3.31 -23.51 16 14 C 0.29 14.97 6.45 133.37 0.86 15.83 16 15 C -0.18 -9.07 10.00 85.07 0.85 -8.22 16 16 N -0.43 -22.81 10.47 -192.23 -2.01 -24.82 16 17 C -0.10 -5.57 10.97 85.27 0.94 -4.64 16 18 C 0.19 10.89 6.54 40.15 0.26 11.15 16 19 C -0.43 -22.20 9.15 23.46 0.21 -21.98 16 20 H 0.10 4.96 7.86 -2.91 -0.02 4.94 16 21 C 0.02 1.03 5.49 85.30 0.47 1.50 16 22 N -0.73 -37.20 11.51 21.84 0.25 -36.95 16 23 Si 0.99 35.59 29.56 68.60 2.03 37.62 16 24 H -0.25 -8.58 7.11 99.48 0.71 -7.88 16 25 H -0.27 -9.17 7.11 99.48 0.71 -8.46 16 26 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 27 N -0.49 -27.51 7.36 -186.00 -1.37 -28.88 16 28 C 0.06 2.23 3.76 86.33 0.32 2.56 16 29 N -0.56 -15.97 10.40 -301.48 -3.14 -19.10 16 30 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.12 0.45 8.10 -2.39 -0.02 0.44 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.19 1.22 8.06 -2.91 -0.02 1.19 16 34 H 0.20 2.75 8.06 -2.91 -0.02 2.73 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 3.52 7.60 -2.39 -0.02 3.50 16 41 H 0.14 6.47 5.78 -2.91 -0.02 6.45 16 42 H 0.15 7.12 8.06 -2.91 -0.02 7.09 16 43 H 0.29 12.92 8.29 -92.70 -0.77 12.16 16 44 H 0.06 2.69 6.96 -2.39 -0.02 2.67 16 45 H 0.04 1.60 7.72 -2.39 -0.02 1.58 16 Total: -1.00 -73.64 372.90 -1.58 -75.22 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 1.02 Total: 32.28 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 8.54 Total: 19.04 kcal Atomic # 7 Polarization: -141.24 SS G_CDS: -12.30 Total: -153.54 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.86 Total: -10.62 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 2.03 Total: 37.62 kcal Total: -73.64 -1.58 -75.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158362962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.352 kcal (2) G-P(sol) polarization free energy of solvation -73.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds