Wall clock time and date at job start Sat Apr 11 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30177 * 126.80140 * 2 1 4 4 O 1.20921 * 111.60471 * 180.02562 * 3 2 1 5 5 C 1.34038 * 111.56431 * 359.76013 * 4 3 2 6 6 C 1.50708 * 126.77690 * 180.29144 * 5 4 3 7 7 C 1.35449 * 106.44736 * 0.38230 * 5 4 3 8 8 C 1.50704 * 128.00401 * 179.90777 * 7 5 4 9 9 N 1.46893 * 109.47295 * 269.67988 * 8 7 5 10 10 C 1.46901 * 111.00360 * 293.95434 * 9 8 7 11 11 C 1.46906 * 110.99932 * 170.00151 * 9 8 7 12 12 C 1.53002 * 109.47053 * 189.99865 * 11 9 8 13 13 C 1.52996 * 109.46891 * 179.97438 * 12 11 9 14 14 N 1.46499 * 109.47185 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00580 * 180.02562 * 14 13 12 16 16 O 1.21285 * 119.99463 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00450 * 179.97438 * 15 14 13 18 18 S 1.80999 * 109.47245 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00185 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99828 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00099 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00036 * 179.97438 * 21 19 18 23 23 Si 1.86792 * 119.99974 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47459 * 90.00040 * 23 21 19 25 25 H 1.48505 * 109.47285 * 210.00080 * 23 21 19 26 26 H 1.48506 * 109.47531 * 329.99954 * 23 21 19 27 27 H 1.08997 * 109.47349 * 269.97819 * 1 2 3 28 28 H 1.09007 * 109.47539 * 29.97294 * 1 2 3 29 29 H 1.08996 * 109.47386 * 149.97301 * 1 2 3 30 30 H 1.08997 * 109.46869 * 270.11319 * 6 5 4 31 31 H 1.08998 * 109.47008 * 30.10816 * 6 5 4 32 32 H 1.08992 * 109.47321 * 150.11098 * 6 5 4 33 33 H 1.09004 * 109.46439 * 149.67974 * 8 7 5 34 34 H 1.08994 * 109.47235 * 29.68776 * 8 7 5 35 35 H 1.08995 * 109.47046 * 296.04847 * 10 9 8 36 36 H 1.09008 * 109.46903 * 56.04730 * 10 9 8 37 37 H 1.08999 * 109.47457 * 176.04446 * 10 9 8 38 38 H 1.08992 * 109.47459 * 309.99948 * 11 9 8 39 39 H 1.09004 * 109.47040 * 70.00098 * 11 9 8 40 40 H 1.09001 * 109.47142 * 300.00160 * 12 11 9 41 41 H 1.09004 * 109.47006 * 60.00213 * 12 11 9 42 42 H 1.09001 * 109.47372 * 300.00036 * 13 12 11 43 43 H 1.08996 * 109.47261 * 60.00575 * 13 12 11 44 44 H 0.97002 * 120.00016 * 359.97438 * 14 13 12 45 45 H 1.09001 * 109.47545 * 300.00424 * 17 15 14 46 46 H 1.09004 * 109.46897 * 60.00102 * 17 15 14 47 47 H 0.97001 * 120.00241 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6024 -0.6067 0.0043 6 6 4.9021 -1.3695 0.0114 7 6 2.3539 -1.1320 -0.0006 8 6 1.9590 -2.5864 -0.0001 9 7 1.8296 -3.0591 -1.3849 10 6 0.7111 -2.3935 -2.0660 11 6 1.6798 -4.5197 -1.4307 12 6 1.7980 -4.9993 -2.8788 13 6 1.6426 -6.5206 -2.9264 14 7 1.7564 -6.9800 -4.3128 15 6 1.6505 -8.2928 -4.5987 16 8 1.4604 -9.0939 -3.7081 17 6 1.7670 -8.7653 -6.0250 18 16 1.5833 -10.5650 -6.0813 19 6 1.7576 -10.8363 -7.8136 20 1 1.9242 -10.0005 -8.4770 21 6 1.6809 -12.1242 -8.3256 22 7 1.8106 -12.3268 -9.6196 23 14 1.3936 -13.5698 -7.1781 24 1 -0.0656 -13.8063 -7.0355 25 1 2.0392 -14.7835 -7.7396 26 1 1.9786 -13.2690 -5.8467 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3634 0.8903 -0.5134 29 1 -0.3634 -0.8897 -0.5142 30 1 5.2201 -1.5550 -1.0145 31 1 5.6636 -0.7851 0.5278 32 1 4.7627 -2.3201 0.5260 33 1 1.0054 -2.7037 0.5146 34 1 2.7231 -3.1701 0.5132 35 1 -0.2248 -2.6644 -1.5773 36 1 0.8471 -1.3131 -2.0172 37 1 0.6810 -2.7092 -3.1089 38 1 2.4610 -4.9842 -0.8292 39 1 0.7029 -4.7974 -1.0346 40 1 1.0167 -4.5349 -3.4803 41 1 2.7749 -4.7217 -3.2748 42 1 2.4243 -6.9848 -2.3249 43 1 0.6660 -6.7987 -2.5303 44 1 1.9074 -6.3392 -5.0252 45 1 0.9857 -8.3009 -6.6266 46 1 2.7439 -8.4875 -6.4210 47 1 1.7573 -13.2268 -9.9774 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234146664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:43 Heat of formation + Delta-G solvation = 16.873986 kcal Electronic energy + Delta-G solvation = -26072.847928 eV Core-core repulsion = 22192.111246 eV Total energy + Delta-G solvation = -3880.736682 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.31562 -39.37916 -38.58480 -35.79401 -34.72070 -33.95065 -32.44740 -31.85155 -29.59908 -29.37178 -28.57783 -27.48581 -26.29203 -25.59806 -23.58187 -21.70555 -21.31292 -20.46953 -20.32890 -18.10864 -17.87209 -17.35912 -16.50724 -16.38247 -16.33120 -15.47232 -15.43024 -15.21056 -14.94137 -14.68108 -14.27236 -14.04092 -13.93868 -13.79481 -13.53939 -13.31915 -13.24581 -13.10468 -12.83636 -12.80422 -12.62768 -12.39669 -12.23390 -11.96096 -11.84634 -11.71548 -11.30211 -11.26870 -11.07020 -11.01118 -10.61176 -10.30597 -9.86489 -9.60953 -9.53813 -9.03245 -8.97623 -8.84406 -8.50913 -6.92586 -6.29496 -4.01335 1.06339 1.73097 2.70179 2.75508 2.96650 3.25538 3.32729 3.49625 3.51148 3.70710 3.73140 4.00471 4.32184 4.32641 4.43892 4.54695 4.65505 4.73022 4.75772 4.79374 4.89277 4.93560 4.97104 4.98915 5.05037 5.09550 5.10348 5.17560 5.18713 5.26572 5.30381 5.31293 5.37470 5.45168 5.51047 5.58336 5.71868 5.74182 5.83269 5.90768 6.00850 6.46308 6.49337 6.55853 7.59709 7.89388 7.93528 8.41087 8.47951 9.16681 10.79722 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031393 B = 0.001474 C = 0.001466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.715281 B =18988.805593 C =19094.003623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.025 3.975 3 N -0.368 5.368 4 O 0.094 5.906 5 C -0.010 4.010 6 C -0.072 4.072 7 C -0.198 4.198 8 C 0.133 3.867 9 N -0.536 5.536 10 C 0.016 3.984 11 C 0.058 3.942 12 C -0.127 4.127 13 C 0.123 3.877 14 N -0.737 5.737 15 C 0.530 3.470 16 O -0.521 6.521 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.029 0.971 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.400 0.600 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 26.184 21.333 33.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 N -0.075 5.075 4 O 0.030 5.970 5 C -0.074 4.074 6 C -0.130 4.130 7 C -0.203 4.203 8 C 0.006 3.994 9 N -0.260 5.260 10 C -0.132 4.132 11 C -0.070 4.070 12 C -0.165 4.165 13 C -0.002 4.002 14 N -0.391 5.391 15 C 0.316 3.684 16 O -0.395 6.395 17 C -0.275 4.275 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.234 0.766 45 H 0.115 0.885 46 H 0.116 0.884 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.330 26.154 22.430 34.481 hybrid contribution -0.716 -0.371 -0.830 1.157 sum 0.614 25.783 21.600 33.641 Atomic orbital electron populations 1.20337 0.86218 1.04059 1.03504 1.23428 0.98775 0.88615 1.02637 1.73858 0.89300 1.23916 1.20391 1.84812 1.21606 1.22651 1.67891 1.24300 0.98349 0.83580 1.01168 1.20351 0.89744 0.98359 1.04518 1.20712 0.91686 0.96847 1.11013 1.20239 1.00849 0.88682 0.89661 1.61957 1.43784 1.05429 1.14827 1.22619 0.91046 0.99879 0.99687 1.22035 1.00991 0.86785 0.97169 1.21776 1.03624 0.94301 0.96839 1.21195 1.02127 0.93282 0.83597 1.45941 1.76035 1.08077 1.09089 1.20282 0.75538 0.81654 0.90919 1.90699 1.46942 1.53529 1.48365 1.23280 1.05772 1.03198 0.95243 1.84783 1.95449 0.98810 1.12579 1.22321 1.57271 0.97669 0.89682 0.89379 1.24711 0.93308 0.98361 0.94923 1.69935 1.47742 1.22584 1.11408 0.86733 0.79920 0.82223 0.82956 1.19225 1.19932 1.15925 0.90192 0.90375 0.89833 0.88915 0.90012 0.89052 0.93287 0.89282 0.95263 0.91179 0.90782 0.90097 0.94144 0.91156 0.90220 0.91528 0.91777 0.76630 0.88512 0.88430 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 9.93 36.00 0.36 -0.12 16 2 C 0.02 0.21 6.41 -82.10 -0.53 -0.32 16 3 N -0.37 -3.79 12.07 33.42 0.40 -3.38 16 4 O 0.09 0.88 11.20 17.18 0.19 1.07 16 5 C -0.01 -0.07 7.49 -35.30 -0.26 -0.33 16 6 C -0.07 -0.27 10.30 36.01 0.37 0.10 16 7 C -0.20 -1.43 5.11 -104.42 -0.53 -1.97 16 8 C 0.13 0.76 5.29 -4.98 -0.03 0.73 16 9 N -0.54 -3.36 4.75 -244.37 -1.16 -4.53 16 10 C 0.02 0.10 7.93 60.07 0.48 0.57 16 11 C 0.06 0.35 4.96 -3.82 -0.02 0.33 16 12 C -0.13 -0.86 5.25 -26.73 -0.14 -1.00 16 13 C 0.12 1.22 5.67 -4.04 -0.02 1.19 16 14 N -0.74 -8.86 5.56 -60.30 -0.33 -9.19 16 15 C 0.53 9.20 7.85 -10.99 -0.09 9.12 16 16 O -0.52 -11.09 15.86 5.55 0.09 -11.00 16 17 C -0.12 -2.37 6.16 36.00 0.22 -2.14 16 18 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 19 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 20 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.46 13.97 55.49 0.78 -25.68 16 23 Si 0.86 21.69 27.74 -169.99 -4.71 16.98 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.38 5.50 -51.93 -0.29 0.10 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.24 7.43 -51.93 -0.39 -0.15 16 33 H 0.05 0.26 8.12 -51.93 -0.42 -0.16 16 34 H 0.09 0.40 7.23 -51.93 -0.38 0.03 16 35 H 0.03 0.16 7.57 -51.93 -0.39 -0.23 16 36 H 0.07 0.48 5.32 -51.92 -0.28 0.20 16 37 H 0.07 0.45 6.47 -51.93 -0.34 0.12 16 38 H 0.08 0.44 7.93 -51.93 -0.41 0.03 16 39 H 0.04 0.24 8.12 -51.93 -0.42 -0.18 16 40 H 0.07 0.46 6.55 -51.93 -0.34 0.12 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.40 3.68 8.47 -40.82 -0.35 3.34 16 45 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 46 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 47 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 396.87 15.07 5.98 5.98 Total: -1.00 -35.59 396.87 -8.12 -43.71 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -7.38 Total: -2.55 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 0.02 Total: -5.82 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -0.32 Total: -42.79 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.28 Total: -9.93 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.59 -8.12 -43.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234146664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.587 kcal (2) G-P(sol) polarization free energy of solvation -35.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds