Wall clock time and date at job start Sat Apr 11 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30258 * 125.61867 * 2 1 4 4 C 1.34474 * 108.70072 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.16658 * 180.02562 * 4 3 2 6 6 C 1.34331 * 107.67029 * 0.02562 * 4 3 2 7 7 C 1.50697 * 126.44432 * 180.25867 * 6 4 3 8 8 N 1.46907 * 109.46873 * 89.71000 * 7 6 4 9 9 C 1.46894 * 111.00104 * 293.95617 * 8 7 6 10 10 C 1.46901 * 110.99622 * 169.99713 * 8 7 6 11 11 C 1.53006 * 109.46814 * 190.00291 * 10 8 7 12 12 C 1.53003 * 109.46779 * 180.02562 * 11 10 8 13 13 N 1.46505 * 109.46676 * 180.02562 * 12 11 10 14 14 C 1.34776 * 119.99655 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00409 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99737 * 180.02562 * 14 13 12 17 17 S 1.81003 * 109.47282 * 179.97438 * 16 14 13 18 18 C 1.76192 * 100.00313 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99687 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00500 * 179.97438 * 18 17 16 21 21 N 1.31641 * 119.99532 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00648 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46998 * 90.00079 * 22 20 18 24 24 H 1.48497 * 109.47130 * 210.00309 * 22 20 18 25 25 H 1.48498 * 109.46609 * 330.00001 * 22 20 18 26 26 O 1.33964 * 125.61941 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.46932 * 269.97510 * 1 2 3 28 28 H 1.08994 * 109.47103 * 29.97476 * 1 2 3 29 29 H 1.09002 * 109.47223 * 149.98071 * 1 2 3 30 30 H 1.08997 * 109.47862 * 269.98311 * 5 4 3 31 31 H 1.09010 * 109.47022 * 29.98255 * 5 4 3 32 32 H 1.08995 * 109.47218 * 149.97465 * 5 4 3 33 33 H 1.08995 * 109.47419 * 209.71053 * 7 6 4 34 34 H 1.09002 * 109.47246 * 329.71470 * 7 6 4 35 35 H 1.09000 * 109.47409 * 59.99857 * 9 8 7 36 36 H 1.09005 * 109.46837 * 180.02562 * 9 8 7 37 37 H 1.09000 * 109.47274 * 299.99661 * 9 8 7 38 38 H 1.09000 * 109.47634 * 310.00182 * 10 8 7 39 39 H 1.09006 * 109.47163 * 70.00737 * 10 8 7 40 40 H 1.09000 * 109.46931 * 300.00322 * 11 10 8 41 41 H 1.08997 * 109.47086 * 60.00252 * 11 10 8 42 42 H 1.09000 * 109.47135 * 299.99564 * 12 11 10 43 43 H 1.08997 * 109.47623 * 59.99947 * 12 11 10 44 44 H 0.97000 * 120.00145 * 359.97438 * 13 12 11 45 45 H 1.09005 * 109.47196 * 299.99942 * 16 14 13 46 46 H 1.09001 * 109.47725 * 59.99587 * 16 14 13 47 47 H 0.96997 * 119.99973 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7570 1.5727 -0.0002 6 6 3.5698 -0.6756 -0.0015 7 6 4.7937 -1.5548 0.0031 8 7 5.1895 -1.8359 1.3896 9 6 5.6359 -0.6118 2.0681 10 6 6.2271 -2.8745 1.4406 11 6 6.4349 -3.3170 2.8905 12 6 7.5161 -4.3983 2.9436 13 7 7.7145 -4.8225 4.3318 14 6 8.6244 -5.7734 4.6223 15 8 9.2785 -6.2783 3.7346 16 6 8.8282 -6.2101 6.0502 17 16 10.1062 -7.4903 6.1130 18 6 10.1385 -7.8056 7.8462 19 1 9.4805 -7.2603 8.5066 20 6 11.0088 -8.7555 8.3628 21 7 11.8104 -9.4204 7.5577 22 14 11.0425 -9.0904 10.2002 23 1 10.0710 -10.1653 10.5253 24 1 12.4069 -9.5186 10.6003 25 1 10.6764 -7.8532 10.9355 26 8 2.2872 -1.0890 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5141 30 1 5.0476 1.7915 -1.0277 31 1 4.5130 2.5023 0.5141 32 1 5.5820 1.0792 0.5134 33 1 4.5703 -2.4913 -0.5079 34 1 5.6088 -1.0457 -0.5113 35 1 4.8240 0.1154 2.0769 36 1 5.9235 -0.8485 3.0925 37 1 6.4920 -0.1942 1.5381 38 1 5.9152 -3.7295 0.8409 39 1 7.1611 -2.4747 1.0454 40 1 6.7468 -2.4619 3.4902 41 1 5.5010 -3.7167 3.2857 42 1 7.2045 -5.2535 2.3439 43 1 8.4498 -3.9983 2.5485 44 1 7.1912 -4.4189 5.0418 45 1 9.1397 -5.3554 6.6506 46 1 7.8941 -6.6101 6.4447 47 1 12.4184 -10.0845 7.9186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234153848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:46 Heat of formation + Delta-G solvation = -17.929116 kcal Electronic energy + Delta-G solvation = -25806.513361 eV Core-core repulsion = 21924.267503 eV Total energy + Delta-G solvation = -3882.245858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.74900 -39.26395 -38.44726 -35.61476 -35.20595 -33.44896 -32.42721 -31.78006 -29.90644 -29.52167 -28.89464 -26.80825 -25.52399 -24.99056 -22.94336 -22.11865 -21.43474 -20.77837 -20.22142 -17.84176 -17.43991 -17.01438 -16.34937 -16.30676 -16.22361 -15.55975 -15.33732 -15.21623 -14.80222 -14.71957 -14.26914 -14.04566 -13.86001 -13.76736 -13.53410 -13.24108 -13.12572 -13.10874 -12.85155 -12.69920 -12.59664 -12.32871 -12.07977 -11.88446 -11.83059 -11.66085 -11.27269 -11.06632 -11.02483 -11.00830 -10.85521 -10.75894 -9.81607 -9.41351 -9.12180 -9.06967 -8.89007 -8.78361 -8.23573 -6.49956 -6.21620 -3.92197 0.98956 2.18181 2.25946 3.01102 3.10283 3.22478 3.26948 3.30635 3.44081 3.56845 3.76868 4.20589 4.23877 4.34406 4.45094 4.57027 4.64478 4.78976 4.80849 4.87554 4.88463 4.94242 5.03190 5.06024 5.12921 5.13565 5.19433 5.21154 5.25441 5.28312 5.33833 5.46711 5.54642 5.59362 5.65113 5.69465 5.83858 5.91645 5.95113 5.96888 6.14343 6.40506 6.46070 6.62471 7.35676 7.59650 7.70946 8.35307 8.61526 9.23724 10.85833 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028912 B = 0.001394 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.231831 B =20082.546733 C =20349.606007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.191 3.809 3 N -0.484 5.484 4 C -0.006 4.006 5 C -0.082 4.082 6 C -0.037 4.037 7 C 0.139 3.861 8 N -0.539 5.539 9 C 0.012 3.988 10 C 0.059 3.941 11 C -0.127 4.127 12 C 0.123 3.877 13 N -0.739 5.739 14 C 0.531 3.469 15 O -0.518 6.518 16 C -0.154 4.154 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 O -0.192 6.192 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.033 0.967 38 H 0.082 0.918 39 H 0.044 0.956 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.398 0.602 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.489 22.407 -16.374 34.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.016 4.016 3 N -0.215 5.215 4 C -0.127 4.127 5 C -0.139 4.139 6 C -0.091 4.091 7 C 0.011 3.989 8 N -0.264 5.264 9 C -0.136 4.136 10 C -0.069 4.069 11 C -0.166 4.166 12 C -0.002 4.002 13 N -0.394 5.394 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 O -0.079 6.079 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.052 0.948 38 H 0.101 0.899 39 H 0.062 0.938 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.232 0.768 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.898 21.802 -17.643 34.388 hybrid contribution -0.126 0.221 2.152 2.167 sum -20.023 22.024 -15.491 33.555 Atomic orbital electron populations 1.20265 0.81269 1.05094 1.04810 1.26240 0.96441 0.78682 1.00239 1.70354 1.01598 1.30383 1.19135 1.21494 0.93432 0.92072 1.05705 1.20370 0.92151 0.98344 1.03074 1.22890 0.83629 0.94330 1.08234 1.20391 0.89480 0.98460 0.90587 1.61890 1.40535 1.09736 1.14195 1.22723 0.99341 0.91728 0.99812 1.22047 0.92738 0.94586 0.97499 1.21785 0.99543 0.98645 0.96584 1.21178 0.98242 0.97002 0.83791 1.45978 1.42275 1.42262 1.08869 1.20310 0.78640 0.78288 0.91028 1.90700 1.45782 1.54144 1.48643 1.23533 1.06487 1.05474 0.94926 1.85390 1.44183 1.43321 1.10525 1.22873 1.26529 1.26669 0.92342 0.90922 1.24992 0.94564 0.94941 0.99062 1.70022 1.21755 1.23481 1.35047 0.86165 0.77615 0.78665 0.83038 1.20266 1.20744 1.19706 1.84395 1.16456 1.37475 1.69555 0.88828 0.88153 0.89277 0.90732 0.90390 0.90278 0.88536 0.90988 0.90977 0.90472 0.94829 0.89908 0.93801 0.91099 0.90239 0.91545 0.91737 0.76797 0.89233 0.89204 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.01 0.38 0.14 16 2 C 0.19 1.68 8.34 -12.95 -0.11 1.57 16 3 N -0.48 -5.03 11.29 -7.36 -0.08 -5.11 16 4 C -0.01 -0.06 6.18 -82.81 -0.51 -0.57 16 5 C -0.08 -0.51 9.50 36.01 0.34 -0.17 16 6 C -0.04 -0.33 6.28 -35.69 -0.22 -0.56 16 7 C 0.14 0.94 5.19 -4.97 -0.03 0.91 16 8 N -0.54 -3.96 4.75 -244.36 -1.16 -5.12 16 9 C 0.01 0.08 7.78 60.06 0.47 0.54 16 10 C 0.06 0.40 4.96 -3.82 -0.02 0.38 16 11 C -0.13 -0.98 5.26 -26.73 -0.14 -1.12 16 12 C 0.12 1.33 5.67 -4.04 -0.02 1.31 16 13 N -0.74 -9.64 5.56 -60.29 -0.33 -9.98 16 14 C 0.53 9.89 7.85 -10.99 -0.09 9.80 16 15 O -0.52 -11.79 15.86 5.56 0.09 -11.70 16 16 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 19 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 22 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 O -0.19 -1.91 10.78 5.36 0.06 -1.85 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.08 0.39 4.63 -51.93 -0.24 0.15 16 33 H 0.10 0.59 7.93 -51.93 -0.41 0.18 16 34 H 0.07 0.37 7.78 -51.93 -0.40 -0.03 16 35 H 0.07 0.53 5.65 -51.93 -0.29 0.24 16 36 H 0.08 0.49 6.30 -51.93 -0.33 0.17 16 37 H 0.03 0.18 7.08 -51.93 -0.37 -0.19 16 38 H 0.08 0.54 7.93 -51.93 -0.41 0.13 16 39 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 40 H 0.07 0.51 6.47 -51.93 -0.34 0.17 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.40 4.03 8.47 -40.82 -0.35 3.69 16 45 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 46 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 47 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 399.47 15.07 6.02 6.02 Total: -1.00 -37.18 399.47 -8.78 -45.96 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -7.33 Total: -1.65 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 0.47 Total: -3.62 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -0.85 Total: -45.67 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.15 Total: -13.55 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.18 -8.78 -45.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234153848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.031 kcal (2) G-P(sol) polarization free energy of solvation -37.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds