Wall clock time and date at job start Sat Apr 11 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29509 * 121.53039 * 2 1 4 4 S 1.69491 * 107.84388 * 180.22499 * 3 2 1 5 5 C 1.72017 * 96.02319 * 359.75682 * 4 3 2 6 6 C 1.50704 * 127.31699 * 180.02562 * 5 4 3 7 7 C 1.37901 * 105.36471 * 0.02562 * 5 4 3 8 8 C 1.47341 * 123.08228 * 179.97438 * 7 5 4 9 9 O 1.21618 * 119.99999 * 90.00642 * 8 7 5 10 10 N 1.34779 * 120.00031 * 269.72333 * 8 7 5 11 11 C 1.46493 * 120.00228 * 0.28225 * 10 8 7 12 12 C 1.46505 * 119.99838 * 180.27600 * 10 8 7 13 13 C 1.52998 * 109.46946 * 90.00489 * 12 10 8 14 14 O 1.42896 * 109.47443 * 64.99839 * 13 12 10 15 15 C 1.42896 * 114.00233 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.47150 * 179.97438 * 15 14 13 17 17 N 1.46505 * 109.47076 * 65.00174 * 16 15 14 18 18 C 1.46498 * 119.99959 * 270.00165 * 17 16 15 19 19 C 1.36934 * 120.00075 * 89.99607 * 17 16 15 20 20 H 1.07994 * 120.00082 * 20.37004 * 19 17 16 21 21 C 1.38821 * 119.99899 * 200.36669 * 19 17 16 22 22 N 1.31615 * 120.00164 * 14.99836 * 21 19 17 23 23 Si 1.86801 * 119.99836 * 194.99696 * 21 19 17 24 24 H 1.48497 * 109.47056 * 84.99956 * 23 21 19 25 25 H 1.48500 * 109.47035 * 205.00592 * 23 21 19 26 26 H 1.48498 * 109.47132 * 325.00312 * 23 21 19 27 27 H 1.08997 * 109.47251 * 270.21592 * 1 2 3 28 28 H 1.08998 * 109.46683 * 30.21710 * 1 2 3 29 29 H 1.09002 * 109.46851 * 150.21492 * 1 2 3 30 30 H 1.08996 * 109.47022 * 269.99930 * 6 5 4 31 31 H 1.08999 * 109.46723 * 30.00196 * 6 5 4 32 32 H 1.08997 * 109.47129 * 149.99654 * 6 5 4 33 33 H 1.09003 * 109.47054 * 89.99284 * 11 10 8 34 34 H 1.09000 * 109.47218 * 209.99950 * 11 10 8 35 35 H 1.09007 * 109.46747 * 329.99586 * 11 10 8 36 36 H 1.08992 * 109.47112 * 210.00145 * 12 10 8 37 37 H 1.09002 * 109.47056 * 330.00442 * 12 10 8 38 38 H 1.09000 * 109.47349 * 185.00242 * 13 12 10 39 39 H 1.09006 * 109.46938 * 305.00016 * 13 12 10 40 40 H 1.08999 * 109.47179 * 299.99852 * 15 14 13 41 41 H 1.08998 * 109.47067 * 60.00411 * 15 14 13 42 42 H 1.08996 * 109.47331 * 184.99596 * 16 15 14 43 43 H 1.08997 * 109.47672 * 305.00555 * 16 15 14 44 44 H 1.09008 * 109.47532 * 95.10205 * 18 17 16 45 45 H 1.08993 * 109.47461 * 215.10215 * 18 17 16 46 46 H 1.09000 * 109.47413 * 335.10323 * 18 17 16 47 47 H 0.96991 * 120.00319 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8311 0.7029 -0.0063 5 6 3.6018 -1.0019 -0.0018 6 6 4.6678 -2.0672 -0.0037 7 6 2.2352 -1.1867 0.0039 8 6 1.6037 -2.5179 0.0087 9 8 1.3471 -3.0655 1.0639 10 7 1.3051 -3.1263 -1.1563 11 6 1.6141 -2.4668 -2.4274 12 6 0.6716 -4.4474 -1.1515 13 6 -0.8495 -4.2834 -1.1424 14 8 -1.2696 -3.6672 -2.3612 15 6 -2.6813 -3.4667 -2.4548 16 6 -3.0148 -2.8037 -3.7928 17 7 -2.6798 -3.7177 -4.8876 18 6 -1.3423 -3.6864 -5.4846 19 6 -3.6167 -4.6013 -5.3529 20 1 -4.6657 -4.4233 -5.1677 21 6 -3.2182 -5.7258 -6.0626 22 7 -1.9583 -6.1058 -6.0403 23 14 -4.4702 -6.6996 -7.0494 24 1 -4.6297 -6.0841 -8.3914 25 1 -4.0007 -8.1004 -7.1998 26 1 -5.7755 -6.6884 -6.3414 27 1 -0.3633 0.0039 1.0276 28 1 -0.3632 0.8880 -0.5172 29 1 -0.3633 -0.8919 -0.5105 30 1 4.9207 -2.3262 -1.0318 31 1 5.5558 -1.6934 0.5059 32 1 4.2977 -2.9524 0.5135 33 1 2.6174 -2.7476 -2.7479 34 1 0.8914 -2.7763 -3.1824 35 1 1.5634 -1.3857 -2.2974 36 1 0.9723 -4.9977 -2.0429 37 1 0.9833 -4.9965 -0.2630 38 1 -1.3199 -5.2623 -1.0492 39 1 -1.1425 -3.6578 -0.2991 40 1 -3.1901 -4.4284 -2.3887 41 1 -3.0119 -2.8239 -1.6389 42 1 -4.0789 -2.5701 -3.8273 43 1 -2.4375 -1.8850 -3.8970 44 1 -0.7152 -4.4419 -5.0111 45 1 -1.4160 -3.8927 -6.5523 46 1 -0.9003 -2.7014 -5.3346 47 1 -1.6799 -6.8917 -6.5359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264669233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:13 Heat of formation + Delta-G solvation = -14.349098 kcal Electronic energy + Delta-G solvation = -28656.335916 eV Core-core repulsion = 24774.245299 eV Total energy + Delta-G solvation = -3882.090617 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.64976 -38.54033 -37.44233 -35.67482 -34.94882 -33.59010 -31.56795 -30.42632 -29.65111 -28.41172 -27.93807 -26.37882 -25.73456 -23.80955 -22.96857 -22.23128 -20.79261 -20.31118 -18.72786 -18.29366 -17.08888 -16.69036 -16.44151 -15.80492 -15.60026 -15.09208 -14.94831 -14.68469 -14.44208 -13.96205 -13.74569 -13.73790 -13.46060 -13.31628 -13.06377 -12.87408 -12.80779 -12.45801 -12.40556 -12.39528 -12.25861 -12.02322 -11.49582 -11.40654 -11.38988 -10.97280 -10.93660 -10.85085 -10.75426 -10.50999 -10.09535 -10.03069 -9.92510 -9.78502 -9.61054 -8.95024 -8.87973 -8.67436 -8.48942 -6.71046 -5.67548 -3.10568 0.29326 1.08426 1.48544 1.91829 2.42006 3.03545 3.39646 3.46160 3.46622 4.05971 4.24305 4.44671 4.53989 4.60687 4.90030 5.06913 5.08110 5.18185 5.22146 5.28671 5.36023 5.38344 5.42744 5.44614 5.55073 5.56712 5.59483 5.67693 5.76934 5.86761 5.92753 5.97480 6.11790 6.19349 6.25927 6.34773 6.47740 6.56248 6.77658 6.89391 7.27790 7.47470 7.80442 7.85434 7.91873 8.01284 8.43474 9.29074 9.93481 10.42784 11.36843 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019981 B = 0.002645 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.969258 B =10584.056851 C =10765.194835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.156 3.844 3 N -0.465 5.465 4 S 0.271 5.729 5 C -0.137 4.137 6 C -0.085 4.085 7 C -0.206 4.206 8 C 0.588 3.412 9 O -0.534 6.534 10 N -0.591 5.591 11 C 0.081 3.919 12 C 0.120 3.880 13 C 0.048 3.952 14 O -0.367 6.367 15 C 0.044 3.956 16 C 0.154 3.846 17 N -0.596 5.596 18 C 0.175 3.825 19 C -0.255 4.255 20 H 0.067 0.933 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.281 1.281 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.041 0.959 40 H 0.047 0.953 41 H 0.023 0.977 42 H 0.057 0.943 43 H 0.043 0.957 44 H 0.032 0.968 45 H 0.035 0.965 46 H -0.007 1.007 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.934 10.307 12.174 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.022 4.022 3 N -0.286 5.286 4 S 0.427 5.573 5 C -0.268 4.268 6 C -0.144 4.144 7 C -0.226 4.226 8 C 0.372 3.628 9 O -0.411 6.411 10 N -0.323 5.323 11 C -0.062 4.062 12 C -0.002 4.002 13 C -0.030 4.030 14 O -0.286 6.286 15 C -0.035 4.035 16 C 0.026 3.974 17 N -0.318 5.318 18 C 0.031 3.969 19 C -0.385 4.385 20 H 0.085 0.915 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.216 1.216 25 H -0.219 1.219 26 H -0.207 1.207 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.012 0.988 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.890 12.011 12.448 22.184 hybrid contribution -1.686 -2.386 -0.301 2.937 sum 12.204 9.625 12.146 19.726 Atomic orbital electron populations 1.20685 0.85898 1.04625 1.04098 1.21289 0.99037 0.86819 0.95008 1.76407 1.00066 1.25870 1.26219 1.83966 1.10729 0.95228 1.67356 1.26027 0.97139 1.02608 1.00981 1.20403 0.94777 0.95307 1.03916 1.20155 0.92526 0.95895 1.14039 1.17417 0.77812 0.83712 0.83843 1.90803 1.53852 1.65620 1.30854 1.47740 1.59182 1.19322 1.06032 1.21869 1.01468 0.97296 0.85572 1.21626 0.91329 0.83288 1.03986 1.22757 0.94518 0.97551 0.88220 1.87923 1.23382 1.80766 1.36481 1.23461 0.81074 0.99679 0.99321 1.20877 0.98032 0.92576 0.85946 1.43895 1.11794 1.40620 1.35532 1.20677 0.85197 0.94118 0.96941 1.19206 0.88193 1.00812 1.30276 0.91529 1.24934 0.96186 0.96746 1.01793 1.70095 1.14991 1.25697 1.44013 0.86333 0.80785 0.79180 0.80580 1.21564 1.21861 1.20713 0.89469 0.89554 0.89692 0.89181 0.89932 0.89769 0.92913 0.88497 0.91905 0.88856 0.88812 0.92732 0.94053 0.93468 0.95929 0.92483 0.93884 0.94932 0.94661 0.98801 0.93955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.96 36.01 0.36 -0.64 16 2 C 0.16 1.92 6.34 -83.20 -0.53 1.39 16 3 N -0.46 -5.75 11.97 32.50 0.39 -5.36 16 4 S 0.27 2.64 23.69 -107.50 -2.55 0.09 16 5 C -0.14 -1.38 6.67 -34.43 -0.23 -1.61 16 6 C -0.09 -0.63 10.19 36.01 0.37 -0.26 16 7 C -0.21 -2.51 3.88 -105.95 -0.41 -2.92 16 8 C 0.59 8.06 5.63 -12.56 -0.07 7.99 16 9 O -0.53 -8.88 16.69 5.26 0.09 -8.79 16 10 N -0.59 -7.63 2.84 -182.88 -0.52 -8.14 16 11 C 0.08 0.95 10.08 59.84 0.60 1.55 16 12 C 0.12 1.62 5.81 -4.04 -0.02 1.59 16 13 C 0.05 0.73 6.28 37.16 0.23 0.97 16 14 O -0.37 -6.64 8.72 -35.23 -0.31 -6.95 16 15 C 0.04 0.82 6.28 37.16 0.23 1.05 16 16 C 0.15 3.08 6.11 -4.04 -0.02 3.06 16 17 N -0.60 -14.74 2.89 -181.12 -0.52 -15.26 16 18 C 0.18 4.26 8.62 59.85 0.52 4.78 16 19 C -0.26 -6.92 9.68 -15.06 -0.15 -7.07 16 20 H 0.07 1.77 7.86 -52.49 -0.41 1.35 16 21 C 0.00 0.05 5.06 -17.43 -0.09 -0.04 16 22 N -0.90 -25.93 10.67 55.49 0.59 -25.34 16 23 Si 0.90 21.71 29.58 -169.99 -5.03 16.68 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.00 7.39 -51.93 -0.38 0.62 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.71 7.85 -51.93 -0.41 0.30 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.10 1.34 7.11 -51.93 -0.37 0.97 16 35 H 0.06 0.71 6.56 -51.93 -0.34 0.37 16 36 H 0.09 1.26 8.07 -51.93 -0.42 0.84 16 37 H 0.09 1.20 7.42 -51.93 -0.39 0.82 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 43 H 0.04 0.80 7.86 -51.93 -0.41 0.39 16 44 H 0.03 0.85 7.40 -51.92 -0.38 0.47 16 45 H 0.03 0.93 7.21 -51.93 -0.37 0.55 16 46 H -0.01 -0.14 7.84 -51.93 -0.41 -0.55 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 401.16 15.07 6.05 6.05 Total: -1.00 -32.30 401.16 -8.67 -40.97 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -7.65 Total: -3.78 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 0.79 Total: 9.83 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.06 Total: -54.11 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.22 Total: -15.74 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -2.55 Total: 0.09 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.30 -8.67 -40.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264669233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.617 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds