Wall clock time and date at job start Sat Apr 11 2020 06:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29509 * 121.53039 * 2 1 4 4 S 1.69491 * 107.84388 * 180.22499 * 3 2 1 5 5 C 1.72017 * 96.02319 * 359.75682 * 4 3 2 6 6 C 1.50704 * 127.31699 * 180.02562 * 5 4 3 7 7 C 1.37901 * 105.36471 * 0.02562 * 5 4 3 8 8 C 1.47341 * 123.08228 * 179.97438 * 7 5 4 9 9 O 1.21618 * 119.99999 * 90.00642 * 8 7 5 10 10 N 1.34779 * 120.00031 * 269.72333 * 8 7 5 11 11 C 1.46493 * 120.00228 * 0.28225 * 10 8 7 12 12 C 1.46505 * 119.99838 * 180.27600 * 10 8 7 13 13 C 1.52998 * 109.46946 * 90.00489 * 12 10 8 14 14 O 1.42896 * 109.47443 * 64.99839 * 13 12 10 15 15 C 1.42896 * 114.00233 * 180.02562 * 14 13 12 16 16 C 1.53003 * 109.47150 * 179.97438 * 15 14 13 17 17 N 1.46505 * 109.47076 * 65.00174 * 16 15 14 18 18 C 1.46498 * 119.99959 * 270.00165 * 17 16 15 19 19 C 1.36934 * 120.00075 * 89.99607 * 17 16 15 20 20 H 1.07994 * 120.00082 * 20.37004 * 19 17 16 21 21 C 1.38821 * 119.99899 * 200.36669 * 19 17 16 22 22 N 1.31615 * 120.00164 * 14.99836 * 21 19 17 23 23 Si 1.86801 * 119.99836 * 194.99696 * 21 19 17 24 24 H 1.48497 * 109.47056 * 84.99956 * 23 21 19 25 25 H 1.48500 * 109.47035 * 205.00592 * 23 21 19 26 26 H 1.48498 * 109.47132 * 325.00312 * 23 21 19 27 27 H 1.08997 * 109.47251 * 270.21592 * 1 2 3 28 28 H 1.08998 * 109.46683 * 30.21710 * 1 2 3 29 29 H 1.09002 * 109.46851 * 150.21492 * 1 2 3 30 30 H 1.08996 * 109.47022 * 269.99930 * 6 5 4 31 31 H 1.08999 * 109.46723 * 30.00196 * 6 5 4 32 32 H 1.08997 * 109.47129 * 149.99654 * 6 5 4 33 33 H 1.09003 * 109.47054 * 89.99284 * 11 10 8 34 34 H 1.09000 * 109.47218 * 209.99950 * 11 10 8 35 35 H 1.09007 * 109.46747 * 329.99586 * 11 10 8 36 36 H 1.08992 * 109.47112 * 210.00145 * 12 10 8 37 37 H 1.09002 * 109.47056 * 330.00442 * 12 10 8 38 38 H 1.09000 * 109.47349 * 185.00242 * 13 12 10 39 39 H 1.09006 * 109.46938 * 305.00016 * 13 12 10 40 40 H 1.08999 * 109.47179 * 299.99852 * 15 14 13 41 41 H 1.08998 * 109.47067 * 60.00411 * 15 14 13 42 42 H 1.08996 * 109.47331 * 184.99596 * 16 15 14 43 43 H 1.08997 * 109.47672 * 305.00555 * 16 15 14 44 44 H 1.09008 * 109.47532 * 95.10205 * 18 17 16 45 45 H 1.08993 * 109.47461 * 215.10215 * 18 17 16 46 46 H 1.09000 * 109.47413 * 335.10323 * 18 17 16 47 47 H 0.96991 * 120.00319 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8311 0.7029 -0.0063 5 6 3.6018 -1.0019 -0.0018 6 6 4.6678 -2.0672 -0.0037 7 6 2.2352 -1.1867 0.0039 8 6 1.6037 -2.5179 0.0087 9 8 1.3471 -3.0655 1.0639 10 7 1.3051 -3.1263 -1.1563 11 6 1.6141 -2.4668 -2.4274 12 6 0.6716 -4.4474 -1.1515 13 6 -0.8495 -4.2834 -1.1424 14 8 -1.2696 -3.6672 -2.3612 15 6 -2.6813 -3.4667 -2.4548 16 6 -3.0148 -2.8037 -3.7928 17 7 -2.6798 -3.7177 -4.8876 18 6 -1.3423 -3.6864 -5.4846 19 6 -3.6167 -4.6013 -5.3529 20 1 -4.6657 -4.4233 -5.1677 21 6 -3.2182 -5.7258 -6.0626 22 7 -1.9583 -6.1058 -6.0403 23 14 -4.4702 -6.6996 -7.0494 24 1 -4.6297 -6.0841 -8.3914 25 1 -4.0007 -8.1004 -7.1998 26 1 -5.7755 -6.6884 -6.3414 27 1 -0.3633 0.0039 1.0276 28 1 -0.3632 0.8880 -0.5172 29 1 -0.3633 -0.8919 -0.5105 30 1 4.9207 -2.3262 -1.0318 31 1 5.5558 -1.6934 0.5059 32 1 4.2977 -2.9524 0.5135 33 1 2.6174 -2.7476 -2.7479 34 1 0.8914 -2.7763 -3.1824 35 1 1.5634 -1.3857 -2.2974 36 1 0.9723 -4.9977 -2.0429 37 1 0.9833 -4.9965 -0.2630 38 1 -1.3199 -5.2623 -1.0492 39 1 -1.1425 -3.6578 -0.2991 40 1 -3.1901 -4.4284 -2.3887 41 1 -3.0119 -2.8239 -1.6389 42 1 -4.0789 -2.5701 -3.8273 43 1 -2.4375 -1.8850 -3.8970 44 1 -0.7152 -4.4419 -5.0111 45 1 -1.4160 -3.8927 -6.5523 46 1 -0.9003 -2.7014 -5.3346 47 1 -1.6799 -6.8917 -6.5359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264669233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:12 Heat of formation + Delta-G solvation = -33.670018 kcal Electronic energy + Delta-G solvation = -28657.173733 eV Core-core repulsion = 24774.245299 eV Total energy + Delta-G solvation = -3882.928435 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.63522 -39.55411 -38.82488 -37.21932 -36.37414 -34.37007 -33.42945 -31.63802 -30.64470 -29.68642 -29.03727 -27.77113 -27.40780 -24.97199 -24.63964 -23.16978 -22.11931 -21.73432 -19.65250 -19.18531 -18.73553 -18.05034 -17.52578 -17.16119 -16.99583 -16.50777 -16.29008 -15.78795 -15.51045 -15.28114 -15.17120 -14.98591 -14.47420 -14.43819 -14.31888 -13.98343 -13.81370 -13.60298 -13.55376 -13.27083 -13.25510 -13.16686 -13.01859 -12.94428 -12.67445 -12.59462 -12.43597 -12.24996 -12.24033 -11.97415 -11.81440 -11.75182 -11.67884 -11.07148 -10.57348 -10.43403 -10.35977 -9.77820 -9.66664 -8.71814 -7.75422 -5.19901 -0.52636 0.28727 0.65121 1.02492 1.37968 1.48406 1.50113 1.57196 2.01507 2.55144 2.92016 3.29581 3.36928 3.49402 3.79456 3.85146 4.10741 4.12312 4.16843 4.25227 4.29469 4.39391 4.45755 4.52851 4.54277 4.55832 4.56907 4.63370 4.65948 4.68465 4.72713 4.83200 4.92700 4.99700 5.00546 5.03329 5.07322 5.20739 5.40006 5.44037 5.49987 5.70228 5.88792 6.23609 6.38259 6.47720 6.95964 7.22873 7.96597 8.40278 9.27279 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019981 B = 0.002645 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.969258 B =10584.056851 C =10765.194835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.150 3.850 3 N -0.495 5.495 4 S 0.315 5.685 5 C -0.127 4.127 6 C -0.088 4.088 7 C -0.233 4.233 8 C 0.595 3.405 9 O -0.569 6.569 10 N -0.588 5.588 11 C 0.086 3.914 12 C 0.125 3.875 13 C 0.050 3.950 14 O -0.380 6.380 15 C 0.053 3.947 16 C 0.150 3.850 17 N -0.612 5.612 18 C 0.195 3.805 19 C -0.262 4.262 20 H 0.070 0.930 21 C -0.052 4.052 22 N -0.931 5.931 23 Si 0.962 3.038 24 H -0.288 1.288 25 H -0.298 1.298 26 H -0.271 1.271 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.044 0.956 40 H 0.020 0.980 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.008 0.992 45 H 0.005 0.995 46 H 0.023 0.977 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.687 11.413 12.539 21.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.027 4.027 3 N -0.317 5.317 4 S 0.471 5.529 5 C -0.258 4.258 6 C -0.146 4.146 7 C -0.253 4.253 8 C 0.381 3.619 9 O -0.448 6.448 10 N -0.318 5.318 11 C -0.056 4.056 12 C 0.002 3.998 13 C -0.028 4.028 14 O -0.299 6.299 15 C -0.026 4.026 16 C 0.024 3.976 17 N -0.335 5.335 18 C 0.050 3.950 19 C -0.392 4.392 20 H 0.088 0.912 21 C -0.247 4.247 22 N -0.578 5.578 23 Si 0.791 3.209 24 H -0.215 1.215 25 H -0.225 1.225 26 H -0.197 1.197 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.026 0.974 45 H 0.024 0.976 46 H 0.041 0.959 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 14.622 13.149 12.818 23.474 hybrid contribution -1.835 -2.637 -0.362 3.233 sum 12.787 10.512 12.456 20.716 Atomic orbital electron populations 1.20667 0.85651 1.04447 1.04297 1.21367 0.99487 0.86808 0.95060 1.76280 1.01787 1.26393 1.27241 1.83793 1.08770 0.94234 1.66103 1.26455 0.96997 1.03727 0.98641 1.20578 0.94718 0.94122 1.05212 1.20072 0.93429 0.95003 1.16828 1.17556 0.77131 0.83972 0.83267 1.90777 1.55396 1.66660 1.31987 1.47757 1.58676 1.18997 1.06418 1.21849 1.01918 0.97466 0.84365 1.21540 0.90143 0.83852 1.04228 1.22821 0.95671 0.97053 0.87237 1.87904 1.22996 1.81056 1.37922 1.23210 0.81325 0.98642 0.99448 1.21061 0.99046 0.92288 0.85245 1.44114 1.11404 1.40810 1.37145 1.20358 0.85118 0.94799 0.94742 1.19534 0.88910 1.00936 1.29809 0.91199 1.25642 0.97842 0.98053 1.03171 1.70253 1.16552 1.26057 1.44937 0.85367 0.79080 0.77358 0.79119 1.21460 1.22452 1.19650 0.89122 0.88657 0.90783 0.87381 0.87479 0.90834 0.90853 0.90535 0.91384 0.88991 0.88100 0.93286 0.93769 0.96192 0.92762 0.91438 0.92034 0.97392 0.97598 0.95890 0.94601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.89 9.96 71.24 0.71 -1.18 16 2 C 0.15 3.52 6.34 43.14 0.27 3.79 16 3 N -0.50 -11.57 11.97 -51.09 -0.61 -12.18 16 4 S 0.31 5.44 23.69 -56.49 -1.34 4.10 16 5 C -0.13 -2.31 6.67 25.61 0.17 -2.14 16 6 C -0.09 -1.07 10.19 71.24 0.73 -0.34 16 7 C -0.23 -5.42 3.88 -20.72 -0.08 -5.50 16 8 C 0.60 15.90 5.63 86.64 0.49 16.39 16 9 O -0.57 -18.77 16.69 -4.09 -0.07 -18.84 16 10 N -0.59 -14.72 2.84 -850.76 -2.41 -17.13 16 11 C 0.09 1.93 10.08 127.77 1.29 3.22 16 12 C 0.12 3.33 5.81 86.38 0.50 3.83 16 13 C 0.05 1.53 6.28 71.98 0.45 1.98 16 14 O -0.38 -13.57 8.72 -148.98 -1.30 -14.87 16 15 C 0.05 1.91 6.28 71.98 0.45 2.36 16 16 C 0.15 5.79 6.11 86.38 0.53 6.32 16 17 N -0.61 -30.02 2.89 -726.93 -2.10 -32.12 16 18 C 0.19 9.51 8.62 127.77 1.10 10.61 16 19 C -0.26 -14.14 9.68 84.04 0.81 -13.33 16 20 H 0.07 3.66 7.86 -2.91 -0.02 3.63 16 21 C -0.05 -2.87 5.06 84.86 0.43 -2.45 16 22 N -0.93 -54.42 10.67 21.65 0.23 -54.19 16 23 Si 0.96 44.85 29.58 68.60 2.03 46.88 16 24 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 1.70 7.39 -2.39 -0.02 1.68 16 30 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 1.11 7.85 -2.39 -0.02 1.09 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 2.07 7.11 -2.39 -0.02 2.05 16 35 H 0.07 1.46 6.56 -2.38 -0.02 1.44 16 36 H 0.09 2.48 8.07 -2.39 -0.02 2.46 16 37 H 0.10 2.56 7.42 -2.39 -0.02 2.54 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.07 2.45 8.03 -2.39 -0.02 2.43 16 43 H 0.06 2.15 7.86 -2.39 -0.02 2.13 16 44 H 0.01 0.42 7.40 -2.38 -0.02 0.40 16 45 H 0.01 0.29 7.21 -2.39 -0.02 0.27 16 46 H 0.02 0.96 7.84 -2.39 -0.02 0.94 16 47 H 0.24 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -69.17 401.16 3.24 -65.94 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.95 Total: 8.82 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: 7.85 Total: 23.58 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -4.90 Total: -115.62 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -1.37 Total: -33.71 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: 5.44 SS G_CDS: -1.34 Total: 4.10 kcal Total: -69.17 3.24 -65.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264669233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.265 kcal (2) G-P(sol) polarization free energy of solvation -69.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds