Wall clock time and date at job start Sat Apr 11 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30254 * 125.61534 * 2 1 4 4 C 1.34483 * 108.70003 * 179.97438 * 3 2 1 5 5 C 1.50706 * 126.16500 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47176 * 90.02339 * 5 4 3 7 7 C 1.46896 * 111.00031 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.46962 * 34.99568 * 7 6 5 9 9 C 1.53003 * 109.47081 * 275.00264 * 7 6 5 10 10 C 1.52995 * 109.47499 * 155.00149 * 7 6 5 11 11 C 1.53006 * 109.47048 * 295.00364 * 10 7 6 12 12 N 1.46498 * 109.47263 * 179.97438 * 11 10 7 13 13 C 1.34775 * 120.00290 * 179.97438 * 12 11 10 14 14 O 1.21286 * 119.99938 * 0.02562 * 13 12 11 15 15 C 1.50694 * 120.00606 * 180.02562 * 13 12 11 16 16 S 1.80993 * 109.47527 * 180.02562 * 15 13 12 17 17 C 1.76195 * 100.00297 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99924 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00222 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00012 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00186 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47051 * 89.99802 * 21 19 17 23 23 H 1.48498 * 109.47145 * 209.99975 * 21 19 17 24 24 H 1.48507 * 109.46787 * 329.99722 * 21 19 17 25 25 C 1.34322 * 107.66912 * 359.97438 * 4 3 2 26 26 C 1.50699 * 126.44743 * 179.97438 * 25 4 3 27 27 O 1.33960 * 125.62340 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47230 * 90.00355 * 1 2 3 29 29 H 1.09002 * 109.46890 * 210.00302 * 1 2 3 30 30 H 1.09000 * 109.47487 * 329.99470 * 1 2 3 31 31 H 1.09000 * 109.46570 * 210.02721 * 5 4 3 32 32 H 1.08999 * 109.46701 * 330.01959 * 5 4 3 33 33 H 1.00901 * 110.99641 * 56.04617 * 6 5 4 34 34 H 1.09001 * 109.46877 * 180.02562 * 9 7 6 35 35 H 1.09002 * 109.46655 * 299.99493 * 9 7 6 36 36 H 1.09000 * 109.47288 * 59.99501 * 9 7 6 37 37 H 1.09004 * 109.47183 * 54.99511 * 10 7 6 38 38 H 1.09000 * 109.47384 * 174.99947 * 10 7 6 39 39 H 1.09004 * 109.46432 * 299.99607 * 11 10 7 40 40 H 1.09000 * 109.47368 * 59.99574 * 11 10 7 41 41 H 0.96998 * 119.99835 * 359.97438 * 12 11 10 42 42 H 1.09007 * 109.46736 * 300.00246 * 15 13 12 43 43 H 1.09000 * 109.47075 * 59.99893 * 15 13 12 44 44 H 0.97001 * 119.99991 * 179.97438 * 20 19 17 45 45 H 1.08991 * 109.47561 * 180.02562 * 26 25 4 46 46 H 1.09004 * 109.46667 * 300.00123 * 26 25 4 47 47 H 1.08993 * 109.47010 * 59.99448 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7570 1.5729 0.0002 6 7 5.1485 1.8675 1.3851 7 6 6.3229 2.7491 1.4239 8 1 6.2775 3.4516 0.5917 9 6 7.5960 1.9079 1.3123 10 6 6.3367 3.5224 2.7440 11 6 5.1267 4.4572 2.8001 12 7 5.1396 5.1973 4.0644 13 6 4.1631 6.0860 4.3351 14 8 3.2735 6.2727 3.5321 15 6 4.1766 6.8477 5.6353 16 16 2.7452 7.9533 5.7018 17 6 3.0045 8.6952 7.2788 18 1 3.8596 8.4121 7.8747 19 6 2.1105 9.6441 7.7548 20 7 2.3045 10.1987 8.9327 21 14 0.6318 10.1343 6.7239 22 1 -0.5154 9.2506 7.0523 23 1 0.2701 11.5445 7.0164 24 1 0.9656 9.9975 5.2833 25 6 3.5698 -0.6755 0.0015 26 6 4.7937 -1.5548 0.0018 27 8 2.2872 -1.0889 0.0005 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 5.5820 1.0794 -0.5135 32 1 4.5128 2.5024 -0.5140 33 1 5.3177 1.0174 1.9016 34 1 8.4674 2.5621 1.3416 35 1 7.6414 1.2054 2.1445 36 1 7.5862 1.3570 0.3718 37 1 6.2924 2.8205 3.5768 38 1 7.2527 4.1093 2.8117 39 1 5.1710 5.1591 1.9674 40 1 4.2107 3.8704 2.7324 41 1 5.8509 5.0477 4.7067 42 1 4.1321 6.1457 6.4680 43 1 5.0928 7.4343 5.7032 44 1 1.6799 10.8621 9.2653 45 1 4.4893 -2.6013 0.0022 46 1 5.3884 -1.3500 -0.8885 47 1 5.3888 -1.3487 0.8915 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266128409.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:18 Heat of formation + Delta-G solvation = -30.018986 kcal Electronic energy + Delta-G solvation = -26294.708027 eV Core-core repulsion = 22411.937913 eV Total energy + Delta-G solvation = -3882.770114 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.64130 -39.20547 -38.09446 -35.50242 -34.57902 -33.73470 -32.38676 -31.57378 -30.51295 -29.97815 -28.08941 -26.89183 -25.56176 -24.60322 -23.16032 -22.04254 -21.20987 -20.80993 -20.14411 -17.80113 -17.23873 -17.01941 -16.25414 -16.11914 -15.87182 -15.50301 -15.12026 -14.98636 -14.89951 -14.29801 -14.17122 -13.93550 -13.78340 -13.63480 -13.44857 -13.25227 -13.17294 -13.09646 -12.84188 -12.81244 -12.74063 -12.33450 -12.19179 -11.91210 -11.59897 -11.41424 -11.20380 -11.18815 -11.10978 -10.95525 -10.66771 -10.52872 -9.80153 -9.37803 -8.95636 -8.93527 -8.80582 -8.66598 -8.42422 -6.84865 -6.23993 -3.94769 1.08769 2.31558 2.33868 2.86650 3.13996 3.37339 3.42444 3.56177 3.63219 3.76250 3.90531 4.30609 4.38534 4.41320 4.50137 4.61554 4.67952 4.80486 4.83607 4.85440 4.90379 5.02754 5.03518 5.09938 5.10939 5.15121 5.17268 5.28100 5.34508 5.41408 5.45034 5.48236 5.61901 5.67725 5.71103 5.73933 5.84670 5.99879 6.03019 6.09777 6.24159 6.61633 6.72905 6.98374 7.51034 7.78199 7.99216 8.46556 8.66195 9.22526 10.85220 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.002027 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.546043 B =13809.929536 C =15527.459463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.187 3.813 3 N -0.461 5.461 4 C -0.003 4.003 5 C 0.143 3.857 6 N -0.674 5.674 7 C 0.087 3.913 8 H 0.084 0.916 9 C -0.182 4.182 10 C -0.117 4.117 11 C 0.127 3.873 12 N -0.739 5.739 13 C 0.528 3.472 14 O -0.519 6.519 15 C -0.124 4.124 16 S -0.142 6.142 17 C -0.520 4.520 18 H 0.088 0.912 19 C 0.094 3.906 20 N -0.882 5.882 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.235 1.235 25 C -0.052 4.052 26 C -0.067 4.067 27 O -0.204 6.204 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.340 0.660 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.396 0.604 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.270 0.730 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.535 -27.020 -20.208 35.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.020 4.020 3 N -0.191 5.191 4 C -0.123 4.123 5 C 0.013 3.987 6 N -0.305 5.305 7 C -0.023 4.023 8 H 0.102 0.898 9 C -0.241 4.241 10 C -0.156 4.156 11 C 0.003 3.997 12 N -0.393 5.393 13 C 0.314 3.686 14 O -0.393 6.393 15 C -0.274 4.274 16 S 0.084 5.916 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.114 4.114 20 N -0.518 5.518 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.106 4.106 26 C -0.123 4.123 27 O -0.091 6.091 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.158 0.842 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.230 0.770 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.097 0.903 46 H 0.105 0.895 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.273 -25.476 -21.360 34.032 hybrid contribution 1.683 -1.269 0.891 2.289 sum 8.957 -26.745 -20.469 34.849 Atomic orbital electron populations 1.20273 0.81197 1.05356 1.04621 1.26293 0.96458 0.78436 1.00804 1.70401 1.01478 1.29949 1.17237 1.21293 0.93349 0.91387 1.06302 1.20131 0.90280 0.97781 0.90465 1.60499 1.36968 1.20595 1.12453 1.21519 0.87572 0.94662 0.98545 0.89770 1.22508 0.99036 1.00830 1.01765 1.21771 0.98165 0.98139 0.97506 1.21224 0.99185 0.93590 0.85653 1.45996 1.28689 1.43365 1.21221 1.20231 0.81209 0.79089 0.88105 1.90707 1.35355 1.64519 1.48768 1.23279 1.05090 1.01831 0.97225 1.84798 1.31225 1.48600 1.26994 1.22334 1.15360 1.27442 1.01631 0.89435 1.24719 0.97559 0.94508 0.94608 1.69945 1.37183 1.27216 1.17501 0.86726 0.83252 0.78570 0.83268 1.19223 1.20006 1.15868 1.23150 0.84052 0.95028 1.08325 1.20247 0.90076 0.98434 1.03579 1.84375 1.16456 1.37981 1.70332 0.88996 0.89435 0.87775 0.93527 0.89038 0.84153 0.91593 0.92239 0.92642 0.91203 0.91044 0.92314 0.90177 0.77042 0.88646 0.88610 0.92007 0.90277 0.89537 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.19 1.95 8.34 -12.95 -0.11 1.85 16 3 N -0.46 -5.88 11.29 -7.36 -0.08 -5.96 16 4 C 0.00 -0.03 6.62 -82.81 -0.55 -0.58 16 5 C 0.14 1.17 5.82 -4.98 -0.03 1.15 16 6 N -0.67 -5.49 5.69 -107.99 -0.61 -6.10 16 7 C 0.09 0.59 2.59 -67.72 -0.18 0.42 16 8 H 0.08 0.61 7.80 -51.93 -0.41 0.21 16 9 C -0.18 -0.86 9.16 37.16 0.34 -0.52 16 10 C -0.12 -0.93 5.01 -26.73 -0.13 -1.06 16 11 C 0.13 1.58 5.56 -4.04 -0.02 1.55 16 12 N -0.74 -10.18 5.56 -60.29 -0.33 -10.51 16 13 C 0.53 10.06 7.85 -10.99 -0.09 9.98 16 14 O -0.52 -12.07 15.86 5.55 0.09 -11.99 16 15 C -0.12 -2.50 6.16 36.00 0.22 -2.28 16 16 S -0.14 -3.75 18.55 -107.50 -1.99 -5.74 16 17 C -0.52 -15.34 10.04 30.94 0.31 -15.03 16 18 H 0.09 2.68 8.03 -52.48 -0.42 2.26 16 19 C 0.09 2.82 5.50 -17.43 -0.10 2.73 16 20 N -0.88 -27.03 13.97 55.49 0.78 -26.26 16 21 Si 0.86 22.31 27.74 -169.99 -4.72 17.59 16 22 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.23 -6.12 6.74 56.52 0.38 -5.74 16 25 C -0.05 -0.46 7.39 -35.69 -0.26 -0.72 16 26 C -0.07 -0.30 9.96 36.00 0.36 0.06 16 27 O -0.20 -2.08 10.77 5.37 0.06 -2.02 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.27 7.19 -51.93 -0.37 -0.10 16 32 H 0.09 0.87 8.06 -51.93 -0.42 0.45 16 33 H 0.34 2.43 8.46 -39.29 -0.33 2.09 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.26 8.13 -51.93 -0.42 -0.16 16 36 H 0.05 0.23 7.45 -51.93 -0.39 -0.16 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.08 1.20 7.75 -51.93 -0.40 0.80 16 41 H 0.40 4.19 8.47 -40.82 -0.35 3.85 16 42 H 0.10 1.80 8.14 -51.91 -0.42 1.38 16 43 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 44 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 45 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 408.23 15.07 6.15 6.15 Total: -1.00 -38.16 408.23 -8.26 -46.41 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -7.74 Total: 0.87 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 0.15 Total: -2.44 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.26 Total: -48.83 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.15 Total: -14.01 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.72 Total: 17.59 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -1.99 Total: -5.74 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -38.16 -8.26 -46.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266128409.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.395 kcal (2) G-P(sol) polarization free energy of solvation -38.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds