Wall clock time and date at job start Sat Apr 11 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30171 * 126.80178 * 2 1 4 4 O 1.20923 * 111.60389 * 179.97438 * 3 2 1 5 5 C 1.34034 * 111.56833 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.78109 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44611 * 359.97438 * 5 4 3 8 8 C 1.50700 * 128.01013 * 179.97438 * 7 5 4 9 9 N 1.46900 * 109.47497 * 89.99448 * 8 7 5 10 10 C 1.46897 * 111.00215 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47034 * 325.00154 * 10 9 8 12 12 C 1.53002 * 109.47345 * 85.00067 * 10 9 8 13 13 C 1.53004 * 109.47028 * 205.00174 * 10 9 8 14 14 C 1.53001 * 109.47145 * 64.99984 * 13 10 9 15 15 N 1.46497 * 109.47006 * 179.97438 * 14 13 10 16 16 C 1.34776 * 120.00081 * 180.02562 * 15 14 13 17 17 O 1.21285 * 119.99917 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00066 * 179.97438 * 16 15 14 19 19 S 1.81005 * 109.46962 * 179.97438 * 18 16 15 20 20 C 1.76195 * 99.99910 * 180.02562 * 19 18 16 21 21 H 1.08006 * 120.00175 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00156 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00342 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99850 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47655 * 89.99708 * 24 22 20 26 26 H 1.48503 * 109.47167 * 209.99932 * 24 22 20 27 27 H 1.48500 * 109.47220 * 329.99648 * 24 22 20 28 28 H 1.09003 * 109.46685 * 90.01751 * 1 2 3 29 29 H 1.09000 * 109.47092 * 210.01902 * 1 2 3 30 30 H 1.09002 * 109.46993 * 330.02722 * 1 2 3 31 31 H 1.09002 * 109.47047 * 0.02562 * 6 5 4 32 32 H 1.08998 * 109.47490 * 120.01955 * 6 5 4 33 33 H 1.09003 * 109.47634 * 240.02910 * 6 5 4 34 34 H 1.08999 * 109.47406 * 209.99865 * 8 7 5 35 35 H 1.09004 * 109.46678 * 329.99675 * 8 7 5 36 36 H 1.00903 * 111.00074 * 303.95595 * 9 8 7 37 37 H 1.09000 * 109.47024 * 179.97438 * 12 10 9 38 38 H 1.09000 * 109.46796 * 300.00310 * 12 10 9 39 39 H 1.08999 * 109.46724 * 59.99613 * 12 10 9 40 40 H 1.08998 * 109.46797 * 184.99602 * 13 10 9 41 41 H 1.08991 * 109.46988 * 304.99522 * 13 10 9 42 42 H 1.08999 * 109.46931 * 300.00072 * 14 13 10 43 43 H 1.09003 * 109.47163 * 60.00007 * 14 13 10 44 44 H 0.96997 * 120.00165 * 359.97438 * 15 14 13 45 45 H 1.08998 * 109.46985 * 299.99601 * 18 16 15 46 46 H 1.09003 * 109.47051 * 60.00037 * 18 16 15 47 47 H 0.96998 * 120.00139 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6068 0.0004 6 6 4.9021 -1.3696 0.0003 7 6 2.3540 -1.1320 0.0003 8 6 1.9591 -2.5863 -0.0005 9 7 1.8310 -3.0597 1.3843 10 6 1.4468 -4.4771 1.4227 11 1 0.7769 -4.6946 0.5909 12 6 2.6994 -5.3484 1.3101 13 6 0.7342 -4.7766 2.7431 14 6 -0.5821 -3.9987 2.8002 15 7 -1.2646 -4.2860 4.0642 16 6 -2.4516 -3.7082 4.3356 17 8 -2.9545 -2.9500 3.5336 18 6 -3.1540 -4.0042 5.6357 19 16 -4.7111 -3.0837 5.7033 20 6 -5.3041 -3.6010 7.2798 21 1 -4.7245 -4.2913 7.8749 22 6 -6.5160 -3.1215 7.7569 23 7 -6.9593 -3.5083 8.9345 24 14 -7.5188 -1.9282 6.7274 25 1 -8.4474 -2.6883 5.8526 26 1 -8.2999 -1.0373 7.6227 27 1 -6.6064 -1.1103 5.8885 28 1 -0.3633 -0.0003 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3633 0.8902 0.5134 31 1 5.7357 -0.6672 0.0009 32 1 4.9553 -1.9970 0.8900 33 1 4.9557 -1.9962 -0.8900 34 1 1.0049 -2.7035 -0.5142 35 1 2.7227 -3.1699 -0.5148 36 1 2.6836 -2.9024 1.9005 37 1 2.4143 -6.4000 1.3391 38 1 3.2070 -5.1349 0.3695 39 1 3.3693 -5.1308 2.1420 40 1 0.5281 -5.8448 2.8105 41 1 1.3703 -4.4761 3.5756 42 1 -0.3760 -2.9305 2.7328 43 1 -1.2182 -4.2993 1.9677 44 1 -0.8627 -4.8926 4.7055 45 1 -3.3599 -5.0725 5.7023 46 1 -2.5184 -3.7039 6.4687 47 1 -7.8064 -3.1734 9.2677 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267120858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:21 Heat of formation + Delta-G solvation = 5.065415 kcal Electronic energy + Delta-G solvation = -26615.208588 eV Core-core repulsion = 22733.959848 eV Total energy + Delta-G solvation = -3881.248740 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.18425 -39.28456 -38.23162 -35.72008 -34.51454 -33.87345 -32.41445 -31.70304 -30.06999 -28.84966 -28.28396 -28.10508 -25.86744 -25.58257 -23.27173 -21.87181 -21.24740 -20.39590 -20.21019 -17.95012 -17.84305 -17.30773 -16.34369 -16.23590 -15.95005 -15.59746 -15.16877 -14.95239 -14.91471 -14.41384 -13.89870 -13.83893 -13.79707 -13.67160 -13.50287 -13.37968 -13.18437 -13.04201 -12.90411 -12.77060 -12.60482 -12.43036 -12.25123 -11.94200 -11.65456 -11.39035 -11.23752 -11.21148 -11.17871 -10.98306 -10.56423 -10.09279 -9.83024 -9.54593 -9.44860 -8.98625 -8.91550 -8.76205 -8.46375 -6.88355 -6.26594 -3.97782 1.13007 1.91946 2.79096 2.82395 3.06953 3.34343 3.38565 3.53318 3.71150 3.74545 3.99345 4.13760 4.33464 4.35731 4.41960 4.55241 4.65115 4.77683 4.81230 4.84550 4.92075 4.98616 5.04198 5.10549 5.12501 5.13026 5.26588 5.31515 5.33774 5.38075 5.38788 5.42337 5.56342 5.61242 5.62699 5.68236 5.79958 5.93806 5.98272 6.05663 6.13055 6.54006 6.65334 6.90953 7.70844 7.96537 8.04548 8.43924 8.58747 9.19775 10.82621 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014891 B = 0.002068 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.836047 B =13537.961054 C =14924.139156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.042 3.958 3 N -0.370 5.370 4 O 0.096 5.904 5 C -0.032 4.032 6 C -0.073 4.073 7 C -0.197 4.197 8 C 0.139 3.861 9 N -0.677 5.677 10 C 0.087 3.913 11 H 0.083 0.917 12 C -0.182 4.182 13 C -0.118 4.118 14 C 0.128 3.872 15 N -0.739 5.739 16 C 0.529 3.471 17 O -0.520 6.520 18 C -0.124 4.124 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.342 0.658 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.397 0.603 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.155 -2.909 -20.093 33.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.117 4.117 3 N -0.076 5.076 4 O 0.032 5.968 5 C -0.096 4.096 6 C -0.131 4.131 7 C -0.201 4.201 8 C 0.010 3.990 9 N -0.308 5.308 10 C -0.023 4.023 11 H 0.102 0.898 12 C -0.241 4.241 13 C -0.157 4.157 14 C 0.004 3.996 15 N -0.393 5.393 16 C 0.315 3.685 17 O -0.395 6.395 18 C -0.275 4.275 19 S 0.084 5.916 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.518 5.518 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.161 0.839 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.230 0.770 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 25.308 -0.071 -21.236 33.037 hybrid contribution 0.968 -1.939 0.869 2.335 sum 26.276 -2.010 -20.367 33.306 Atomic orbital electron populations 1.20231 0.85564 1.04752 1.03180 1.23493 0.99117 0.88056 1.01058 1.73874 0.89163 1.23973 1.20588 1.84822 1.21882 1.22269 1.67854 1.24262 0.98053 0.84261 1.03055 1.20317 0.90353 0.98650 1.03773 1.20807 0.91442 0.97327 1.10573 1.20098 1.01129 0.87443 0.90299 1.60576 1.40015 1.17631 1.12563 1.21517 0.95972 0.86421 0.98429 0.89837 1.22498 0.98564 1.01270 1.01799 1.21779 0.96291 1.00037 0.97573 1.21218 0.91566 1.01101 0.85742 1.46001 1.22208 1.49801 1.21279 1.20234 0.80408 0.79777 0.88084 1.90694 1.65029 1.34936 1.48835 1.23283 1.01812 1.05167 0.97225 1.84784 1.18840 1.60879 1.27114 1.22326 1.09510 1.33116 1.01869 0.89422 1.24720 0.96406 0.95659 0.94602 1.69939 1.20943 1.43318 1.17569 0.86729 0.81827 0.82193 0.81077 1.19230 1.19981 1.15880 0.90385 0.89069 0.90430 0.89767 0.89437 0.89371 0.89443 0.93861 0.83935 0.91632 0.92640 0.92218 0.91038 0.91141 0.90311 0.92336 0.76971 0.88635 0.88578 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.39 36.01 0.37 -0.40 16 2 C 0.04 0.46 7.33 -82.10 -0.60 -0.15 16 3 N -0.37 -4.57 12.07 33.42 0.40 -4.16 16 4 O 0.10 1.01 11.20 17.19 0.19 1.20 16 5 C -0.03 -0.24 7.49 -35.31 -0.26 -0.51 16 6 C -0.07 -0.24 10.23 36.00 0.37 0.13 16 7 C -0.20 -1.65 5.83 -104.42 -0.61 -2.26 16 8 C 0.14 0.86 5.81 -4.98 -0.03 0.83 16 9 N -0.68 -4.28 5.69 -107.99 -0.61 -4.89 16 10 C 0.09 0.47 2.59 -67.71 -0.18 0.30 16 11 H 0.08 0.48 7.80 -51.93 -0.41 0.08 16 12 C -0.18 -0.71 9.16 37.16 0.34 -0.37 16 13 C -0.12 -0.80 5.01 -26.73 -0.13 -0.93 16 14 C 0.13 1.38 5.56 -4.04 -0.02 1.36 16 15 N -0.74 -9.36 5.56 -60.29 -0.33 -9.70 16 16 C 0.53 9.53 7.85 -10.99 -0.09 9.44 16 17 O -0.52 -11.41 15.86 5.55 0.09 -11.32 16 18 C -0.12 -2.43 6.16 36.01 0.22 -2.21 16 19 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 20 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 21 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 22 C 0.09 2.80 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.77 13.97 55.49 0.78 -26.00 16 24 Si 0.86 22.03 27.74 -169.99 -4.71 17.31 16 25 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.23 -6.04 6.74 56.52 0.38 -5.66 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.09 0.57 8.06 -51.93 -0.42 0.15 16 35 H 0.04 0.19 7.37 -51.93 -0.38 -0.19 16 36 H 0.34 1.95 8.46 -39.29 -0.33 1.62 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.05 0.19 7.45 -51.93 -0.39 -0.20 16 39 H 0.06 0.22 8.13 -51.93 -0.42 -0.20 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.08 1.01 7.75 -51.93 -0.40 0.61 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.40 3.85 8.47 -40.82 -0.35 3.51 16 45 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 46 H 0.10 1.76 8.14 -51.91 -0.42 1.33 16 47 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 408.06 15.07 6.15 6.15 Total: -1.00 -36.14 408.06 -8.20 -44.34 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.75 Total: -0.38 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -0.40 Total: -6.89 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.23 Total: -44.75 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.28 Total: -10.12 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.31 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.14 -8.20 -44.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267120858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.401 kcal (2) G-P(sol) polarization free energy of solvation -36.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds