Wall clock time and date at job start Sat Apr 11 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30171 * 126.80178 * 2 1 4 4 O 1.20923 * 111.60389 * 179.97438 * 3 2 1 5 5 C 1.34034 * 111.56833 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.78109 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44611 * 359.97438 * 5 4 3 8 8 C 1.50701 * 128.00983 * 180.02562 * 7 5 4 9 9 N 1.46903 * 109.47065 * 89.99502 * 8 7 5 10 10 C 1.46902 * 110.99919 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.47186 * 35.00825 * 10 9 8 12 12 C 1.52996 * 109.47335 * 275.00349 * 10 9 8 13 13 C 1.53000 * 109.46935 * 155.00145 * 10 9 8 14 14 C 1.52995 * 109.47508 * 295.00326 * 13 10 9 15 15 N 1.46497 * 109.47486 * 180.02562 * 14 13 10 16 16 C 1.34780 * 119.99980 * 180.02562 * 15 14 13 17 17 O 1.21275 * 119.99989 * 359.97438 * 16 15 14 18 18 C 1.50706 * 119.99681 * 179.97438 * 16 15 14 19 19 S 1.81000 * 109.46782 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99636 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00688 * 359.97438 * 20 19 18 22 22 C 1.38807 * 119.99921 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99887 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99934 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47428 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46762 * 120.00225 * 24 22 20 27 27 H 1.48501 * 109.47328 * 239.99826 * 24 22 20 28 28 H 1.09003 * 109.46685 * 90.01751 * 1 2 3 29 29 H 1.09000 * 109.47092 * 210.01902 * 1 2 3 30 30 H 1.09002 * 109.46993 * 330.02722 * 1 2 3 31 31 H 1.09002 * 109.47047 * 0.02562 * 6 5 4 32 32 H 1.08998 * 109.47490 * 120.01955 * 6 5 4 33 33 H 1.09003 * 109.47634 * 240.02910 * 6 5 4 34 34 H 1.08997 * 109.47501 * 209.99941 * 8 7 5 35 35 H 1.08995 * 109.47035 * 330.00032 * 8 7 5 36 36 H 1.00900 * 110.99762 * 56.05265 * 9 8 7 37 37 H 1.09000 * 109.47175 * 60.00030 * 12 10 9 38 38 H 1.09004 * 109.47220 * 180.02562 * 12 10 9 39 39 H 1.09007 * 109.47190 * 300.00053 * 12 10 9 40 40 H 1.09006 * 109.47117 * 55.00200 * 13 10 9 41 41 H 1.09004 * 109.47279 * 174.99770 * 13 10 9 42 42 H 1.09006 * 109.46828 * 300.00050 * 14 13 10 43 43 H 1.09004 * 109.47304 * 59.99460 * 14 13 10 44 44 H 0.97001 * 119.99859 * 359.97438 * 15 14 13 45 45 H 1.08998 * 109.46894 * 299.99533 * 18 16 15 46 46 H 1.08994 * 109.47022 * 59.99495 * 18 16 15 47 47 H 0.96999 * 120.00422 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6068 0.0004 6 6 4.9021 -1.3696 0.0003 7 6 2.3540 -1.1320 0.0003 8 6 1.9591 -2.5864 0.0006 9 7 1.8306 -3.0585 1.3857 10 6 1.4463 -4.4759 1.4253 11 1 1.9146 -5.0026 0.5938 12 6 -0.0749 -4.5952 1.3128 13 6 1.9100 -5.0933 2.7461 14 6 3.4389 -5.0867 2.8033 15 7 3.8829 -5.6784 4.0677 16 6 5.1993 -5.7781 4.3396 17 8 6.0161 -5.3783 3.5373 18 6 5.6560 -6.3863 5.6406 19 16 7.4647 -6.3785 5.7081 20 6 7.7152 -7.1234 7.2851 21 1 6.8664 -7.4251 7.8809 22 6 9.0035 -7.3224 7.7619 23 7 10.0380 -6.9543 7.0361 24 14 9.2690 -8.1114 9.4342 25 1 7.9539 -8.4306 10.0454 26 1 10.0556 -9.3606 9.2727 27 1 10.0088 -7.1708 10.3135 28 1 -0.3633 -0.0003 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3633 0.8902 0.5134 31 1 5.7357 -0.6672 0.0009 32 1 4.9553 -1.9970 0.8900 33 1 4.9557 -1.9962 -0.8900 34 1 1.0051 -2.7040 -0.5133 35 1 2.7228 -3.1704 -0.5129 36 1 1.1748 -2.4913 1.9017 37 1 -0.4052 -4.1553 0.3718 38 1 -0.3600 -5.6469 1.3425 39 1 -0.5432 -4.0685 2.1443 40 1 1.5128 -4.5119 3.5782 41 1 1.5483 -6.1193 2.8144 42 1 3.8361 -5.6680 1.9711 43 1 3.8006 -4.0607 2.7350 44 1 3.2296 -5.9979 4.7096 45 1 5.2585 -5.8051 6.4727 46 1 5.2946 -7.4123 5.7086 47 1 10.9384 -7.0937 7.3691 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267120859.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:23 Heat of formation + Delta-G solvation = 4.333594 kcal Electronic energy + Delta-G solvation = -26552.244599 eV Core-core repulsion = 22670.964124 eV Total energy + Delta-G solvation = -3881.280474 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.14423 -39.18227 -38.16272 -35.69230 -34.43209 -33.78012 -32.40918 -31.62942 -29.95496 -29.03119 -28.07553 -28.00608 -25.80428 -25.45870 -23.19474 -21.79588 -21.23161 -20.43099 -20.07688 -17.89487 -17.81071 -17.16632 -16.28119 -16.16544 -15.90085 -15.57899 -15.08353 -14.90138 -14.78785 -14.13339 -13.94813 -13.88648 -13.82009 -13.59512 -13.45428 -13.26868 -13.15587 -12.99108 -12.90573 -12.61269 -12.45497 -12.40847 -12.20999 -11.90588 -11.55664 -11.38887 -11.14440 -11.11499 -11.05323 -10.99635 -10.73647 -10.17636 -9.78118 -9.42488 -9.32920 -9.05811 -8.84755 -8.69230 -8.19989 -6.47049 -6.19901 -3.89784 1.23341 1.87914 2.88380 3.09651 3.18847 3.22798 3.29980 3.35475 3.77527 3.79562 3.91649 4.16639 4.22372 4.44719 4.47728 4.62258 4.70927 4.85541 4.95351 5.04233 5.05561 5.09104 5.11637 5.15276 5.18650 5.26617 5.30375 5.31578 5.34818 5.42644 5.43357 5.54752 5.62765 5.67360 5.70718 5.73990 5.89301 5.91509 6.00826 6.17995 6.18798 6.59256 6.74262 6.95882 7.61838 7.80664 8.04490 8.37409 8.70632 9.25572 10.87580 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016111 B = 0.001931 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.515011 B =14495.546308 C =15682.297662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.022 3.978 3 N -0.370 5.370 4 O 0.094 5.906 5 C 0.001 3.999 6 C -0.078 4.078 7 C -0.210 4.210 8 C 0.141 3.859 9 N -0.677 5.677 10 C 0.087 3.913 11 H 0.083 0.917 12 C -0.183 4.183 13 C -0.118 4.118 14 C 0.128 3.872 15 N -0.741 5.741 16 C 0.531 3.469 17 O -0.519 6.519 18 C -0.154 4.154 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.072 3.928 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.343 0.657 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.078 0.922 44 H 0.395 0.605 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.510 8.202 -15.592 29.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.137 4.137 3 N -0.077 5.077 4 O 0.031 5.969 5 C -0.063 4.063 6 C -0.136 4.136 7 C -0.214 4.214 8 C 0.012 3.988 9 N -0.308 5.308 10 C -0.023 4.023 11 H 0.102 0.898 12 C -0.242 4.242 13 C -0.157 4.157 14 C 0.004 3.996 15 N -0.395 5.395 16 C 0.317 3.683 17 O -0.393 6.393 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.161 0.839 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.229 0.771 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.472 10.082 -16.898 29.124 hybrid contribution -2.179 -1.798 2.083 3.510 sum -23.651 8.284 -14.815 29.112 Atomic orbital electron populations 1.20132 0.86269 1.03559 1.03188 1.23427 0.98703 0.88746 1.02870 1.73846 0.89350 1.23994 1.20486 1.84822 1.21539 1.22819 1.67770 1.24410 0.98518 0.83388 1.00018 1.20439 0.89567 0.98715 1.04853 1.20748 0.91719 0.96883 1.12075 1.20069 1.00226 0.88245 0.90262 1.60584 1.54867 1.02777 1.12603 1.21512 0.93481 0.88905 0.98420 0.89844 1.22500 0.96950 1.02902 1.01800 1.21779 0.95643 1.00720 0.97528 1.21197 0.93012 0.99501 0.85873 1.46047 1.07364 1.64999 1.21129 1.20255 0.81712 0.78200 0.88159 1.90687 1.52610 1.47173 1.48833 1.23534 1.07032 1.03048 0.96823 1.85380 0.92085 1.80650 1.25326 1.22915 0.95135 1.46291 1.03917 0.90916 1.24998 0.94975 0.95413 0.98278 1.70026 0.98545 1.44612 1.37100 0.86120 0.78337 0.78838 0.82212 1.19641 1.20597 1.20578 0.90310 0.90480 0.90475 0.89896 0.87955 0.89179 0.93917 0.89547 0.83875 0.92657 0.91675 0.92265 0.91218 0.91120 0.92380 0.90379 0.77143 0.89351 0.89375 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.39 36.01 0.37 -0.08 16 2 C 0.02 0.21 7.33 -82.10 -0.60 -0.39 16 3 N -0.37 -4.41 12.07 33.42 0.40 -4.01 16 4 O 0.09 1.08 11.20 17.19 0.19 1.27 16 5 C 0.00 0.01 7.49 -35.31 -0.26 -0.26 16 6 C -0.08 -0.59 10.23 36.00 0.37 -0.22 16 7 C -0.21 -1.83 5.83 -104.42 -0.61 -2.44 16 8 C 0.14 0.93 5.81 -4.97 -0.03 0.90 16 9 N -0.68 -4.57 5.69 -107.99 -0.61 -5.19 16 10 C 0.09 0.52 2.59 -67.71 -0.18 0.34 16 11 H 0.08 0.51 7.80 -51.93 -0.40 0.11 16 12 C -0.18 -0.83 9.16 37.16 0.34 -0.49 16 13 C -0.12 -0.84 5.00 -26.73 -0.13 -0.98 16 14 C 0.13 1.43 5.56 -4.05 -0.02 1.40 16 15 N -0.74 -9.74 5.56 -60.29 -0.33 -10.08 16 16 C 0.53 9.91 7.85 -10.98 -0.09 9.82 16 17 O -0.52 -11.75 15.86 5.56 0.09 -11.66 16 18 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.53 -15.27 9.50 30.94 0.29 -14.98 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 24 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.04 0.23 7.44 -51.93 -0.39 -0.15 16 35 H 0.09 0.56 7.99 -51.93 -0.41 0.14 16 36 H 0.34 2.24 8.47 -39.29 -0.33 1.91 16 37 H 0.05 0.23 7.45 -51.93 -0.39 -0.15 16 38 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.06 0.26 8.13 -51.93 -0.42 -0.16 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 1.01 7.75 -51.93 -0.40 0.61 16 44 H 0.40 4.03 8.47 -40.82 -0.35 3.68 16 45 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 46 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 47 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 410.75 15.07 6.19 6.19 Total: -1.00 -35.74 410.75 -8.71 -44.45 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.71 Total: 0.21 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -0.42 Total: -8.27 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.19 Total: -44.76 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.28 Total: -10.39 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.74 -8.71 -44.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267120859.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.786 kcal (2) G-P(sol) polarization free energy of solvation -35.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds