Wall clock time and date at job start Sat Apr 11 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30171 * 126.80178 * 2 1 4 4 O 1.20923 * 111.60389 * 179.97438 * 3 2 1 5 5 C 1.34034 * 111.56833 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.78109 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44611 * 359.97438 * 5 4 3 8 8 C 1.50701 * 128.00983 * 180.02562 * 7 5 4 9 9 N 1.46903 * 109.47065 * 89.99502 * 8 7 5 10 10 C 1.46902 * 110.99919 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.47186 * 35.00825 * 10 9 8 12 12 C 1.52996 * 109.47335 * 275.00349 * 10 9 8 13 13 C 1.53000 * 109.46935 * 155.00145 * 10 9 8 14 14 C 1.52995 * 109.47508 * 295.00326 * 13 10 9 15 15 N 1.46497 * 109.47486 * 180.02562 * 14 13 10 16 16 C 1.34780 * 119.99980 * 180.02562 * 15 14 13 17 17 O 1.21275 * 119.99989 * 359.97438 * 16 15 14 18 18 C 1.50706 * 119.99681 * 179.97438 * 16 15 14 19 19 S 1.81000 * 109.46782 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99636 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00688 * 359.97438 * 20 19 18 22 22 C 1.38807 * 119.99921 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99887 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99934 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47428 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46762 * 120.00225 * 24 22 20 27 27 H 1.48501 * 109.47328 * 239.99826 * 24 22 20 28 28 H 1.09003 * 109.46685 * 90.01751 * 1 2 3 29 29 H 1.09000 * 109.47092 * 210.01902 * 1 2 3 30 30 H 1.09002 * 109.46993 * 330.02722 * 1 2 3 31 31 H 1.09002 * 109.47047 * 0.02562 * 6 5 4 32 32 H 1.08998 * 109.47490 * 120.01955 * 6 5 4 33 33 H 1.09003 * 109.47634 * 240.02910 * 6 5 4 34 34 H 1.08997 * 109.47501 * 209.99941 * 8 7 5 35 35 H 1.08995 * 109.47035 * 330.00032 * 8 7 5 36 36 H 1.00900 * 110.99762 * 56.05265 * 9 8 7 37 37 H 1.09000 * 109.47175 * 60.00030 * 12 10 9 38 38 H 1.09004 * 109.47220 * 180.02562 * 12 10 9 39 39 H 1.09007 * 109.47190 * 300.00053 * 12 10 9 40 40 H 1.09006 * 109.47117 * 55.00200 * 13 10 9 41 41 H 1.09004 * 109.47279 * 174.99770 * 13 10 9 42 42 H 1.09006 * 109.46828 * 300.00050 * 14 13 10 43 43 H 1.09004 * 109.47304 * 59.99460 * 14 13 10 44 44 H 0.97001 * 119.99859 * 359.97438 * 15 14 13 45 45 H 1.08998 * 109.46894 * 299.99533 * 18 16 15 46 46 H 1.08994 * 109.47022 * 59.99495 * 18 16 15 47 47 H 0.96999 * 120.00422 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6068 0.0004 6 6 4.9021 -1.3696 0.0003 7 6 2.3540 -1.1320 0.0003 8 6 1.9591 -2.5864 0.0006 9 7 1.8306 -3.0585 1.3857 10 6 1.4463 -4.4759 1.4253 11 1 1.9146 -5.0026 0.5938 12 6 -0.0749 -4.5952 1.3128 13 6 1.9100 -5.0933 2.7461 14 6 3.4389 -5.0867 2.8033 15 7 3.8829 -5.6784 4.0677 16 6 5.1993 -5.7781 4.3396 17 8 6.0161 -5.3783 3.5373 18 6 5.6560 -6.3863 5.6406 19 16 7.4647 -6.3785 5.7081 20 6 7.7152 -7.1234 7.2851 21 1 6.8664 -7.4251 7.8809 22 6 9.0035 -7.3224 7.7619 23 7 10.0380 -6.9543 7.0361 24 14 9.2690 -8.1114 9.4342 25 1 7.9539 -8.4306 10.0454 26 1 10.0556 -9.3606 9.2727 27 1 10.0088 -7.1708 10.3135 28 1 -0.3633 -0.0003 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3633 0.8902 0.5134 31 1 5.7357 -0.6672 0.0009 32 1 4.9553 -1.9970 0.8900 33 1 4.9557 -1.9962 -0.8900 34 1 1.0051 -2.7040 -0.5133 35 1 2.7228 -3.1704 -0.5129 36 1 1.1748 -2.4913 1.9017 37 1 -0.4052 -4.1553 0.3718 38 1 -0.3600 -5.6469 1.3425 39 1 -0.5432 -4.0685 2.1443 40 1 1.5128 -4.5119 3.5782 41 1 1.5483 -6.1193 2.8144 42 1 3.8361 -5.6680 1.9711 43 1 3.8006 -4.0607 2.7350 44 1 3.2296 -5.9979 4.7096 45 1 5.2585 -5.8051 6.4727 46 1 5.2946 -7.4123 5.7086 47 1 10.9384 -7.0937 7.3691 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267120859.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:23 Heat of formation + Delta-G solvation = -21.028171 kcal Electronic energy + Delta-G solvation = -26553.344367 eV Core-core repulsion = 22670.964124 eV Total energy + Delta-G solvation = -3882.380243 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.88960 -40.53391 -38.81668 -36.49765 -35.43523 -34.57070 -34.50782 -32.46147 -31.09088 -29.62929 -29.07033 -28.63128 -27.63337 -26.38719 -24.04107 -22.45898 -22.01010 -21.37702 -21.00787 -19.79071 -18.66709 -17.93087 -17.67332 -17.13941 -16.89750 -16.86568 -16.35955 -16.12149 -15.80885 -15.52941 -14.81209 -14.72566 -14.61426 -14.44858 -14.31332 -14.22666 -13.98781 -13.77080 -13.65520 -13.46901 -13.39005 -13.14152 -13.11097 -12.98161 -12.90508 -12.64162 -12.60659 -12.19036 -12.15171 -11.82752 -11.68181 -11.67580 -11.14505 -10.88387 -10.85822 -10.24603 -10.14203 -9.99126 -9.26304 -8.64264 -8.33317 -6.10799 0.49118 1.19837 1.29701 1.42319 1.49449 1.60518 1.69604 2.19079 2.28205 2.40302 3.00712 3.21393 3.35149 3.37145 3.53583 3.87509 3.89899 4.01723 4.07027 4.22683 4.29372 4.35211 4.38997 4.52206 4.54280 4.57318 4.60657 4.62057 4.64280 4.68409 4.79438 4.80229 4.86970 4.92771 4.97073 5.09730 5.14928 5.23881 5.29210 5.30864 5.36880 5.43666 5.58567 6.11170 6.21588 6.48662 6.61011 7.08076 7.29857 7.34091 8.76112 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016111 B = 0.001931 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.515011 B =14495.546308 C =15682.297662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.022 3.978 3 N -0.405 5.405 4 O 0.069 5.931 5 C -0.012 4.012 6 C -0.074 4.074 7 C -0.209 4.209 8 C 0.147 3.853 9 N -0.688 5.688 10 C 0.091 3.909 11 H 0.083 0.917 12 C -0.175 4.175 13 C -0.107 4.107 14 C 0.129 3.871 15 N -0.714 5.714 16 C 0.531 3.469 17 O -0.566 6.566 18 C -0.130 4.130 19 S -0.152 6.152 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.275 1.275 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.345 0.655 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.049 0.951 43 H 0.060 0.940 44 H 0.414 0.586 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.526 6.747 -14.765 31.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.138 4.138 3 N -0.116 5.116 4 O 0.010 5.990 5 C -0.076 4.076 6 C -0.132 4.132 7 C -0.213 4.213 8 C 0.018 3.982 9 N -0.320 5.320 10 C -0.019 4.019 11 H 0.101 0.899 12 C -0.234 4.234 13 C -0.145 4.145 14 C 0.006 3.994 15 N -0.368 5.368 16 C 0.316 3.684 17 O -0.445 6.445 18 C -0.281 4.281 19 S 0.075 5.925 20 C -0.693 4.693 21 H 0.101 0.899 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.200 1.200 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.164 0.836 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.251 0.749 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.538 8.616 -16.066 30.569 hybrid contribution -1.355 -1.325 1.755 2.583 sum -25.893 7.290 -14.311 30.470 Atomic orbital electron populations 1.20293 0.83903 1.04552 1.04356 1.24049 1.00228 0.88377 1.01099 1.73836 0.89776 1.25452 1.22566 1.84775 1.21731 1.23811 1.68697 1.24837 0.99701 0.83021 1.00091 1.20458 0.89040 0.98613 1.05040 1.21059 0.91159 0.97864 1.11243 1.20078 1.01074 0.86668 0.90413 1.60536 1.55387 1.03352 1.12757 1.21470 0.94685 0.88175 0.97565 0.89902 1.22417 0.95298 1.03376 1.02325 1.21737 0.92091 1.02080 0.98630 1.21315 0.95881 0.97959 0.84264 1.45834 1.05644 1.63225 1.22111 1.20036 0.83178 0.78016 0.87157 1.90677 1.54304 1.49501 1.50007 1.23383 1.01173 1.04924 0.98647 1.85564 0.99609 1.81129 1.26210 1.23240 0.95847 1.46251 1.03941 0.89946 1.26141 0.94552 0.95816 1.02796 1.70189 0.99166 1.45992 1.39416 0.84900 0.78833 0.77711 0.76462 1.18013 1.19920 1.19997 0.88937 0.88354 0.90588 0.89539 0.89112 0.87451 0.92112 0.89499 0.83633 0.92013 0.91179 0.91892 0.90547 0.89445 0.93283 0.92175 0.74924 0.87481 0.87295 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.39 71.24 0.74 -0.02 16 2 C 0.02 0.40 7.33 43.58 0.32 0.72 16 3 N -0.41 -9.93 12.07 -49.56 -0.60 -10.53 16 4 O 0.07 1.68 11.20 71.69 0.80 2.49 16 5 C -0.01 -0.24 7.49 25.04 0.19 -0.06 16 6 C -0.07 -1.16 10.23 71.23 0.73 -0.43 16 7 C -0.21 -3.50 5.83 -19.74 -0.12 -3.62 16 8 C 0.15 1.66 5.81 85.56 0.50 2.16 16 9 N -0.69 -7.96 5.69 -495.58 -2.82 -10.78 16 10 C 0.09 0.83 2.59 44.91 0.12 0.94 16 11 H 0.08 0.80 7.80 -2.39 -0.02 0.78 16 12 C -0.18 -0.97 9.16 71.98 0.66 -0.31 16 13 C -0.11 -1.21 5.00 30.59 0.15 -1.06 16 14 C 0.13 2.68 5.56 86.38 0.48 3.16 16 15 N -0.71 -17.38 5.56 -463.06 -2.57 -19.96 16 16 C 0.53 19.48 7.85 87.66 0.69 20.17 16 17 O -0.57 -26.20 15.86 -3.01 -0.05 -26.25 16 18 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 19 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 20 C -0.54 -31.19 9.50 67.96 0.65 -30.54 16 21 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 22 C 0.01 0.66 5.49 84.86 0.47 1.13 16 23 N -0.91 -56.12 13.22 21.65 0.29 -55.83 16 24 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 25 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 0.58 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 0.49 7.44 -2.39 -0.02 0.47 16 35 H 0.09 0.99 7.99 -2.39 -0.02 0.97 16 36 H 0.34 3.72 8.47 -89.69 -0.76 2.96 16 37 H 0.06 0.29 7.45 -2.39 -0.02 0.28 16 38 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.06 0.33 8.13 -2.38 -0.02 0.31 16 40 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.06 1.52 7.75 -2.38 -0.02 1.50 16 44 H 0.41 7.09 8.47 -92.71 -0.79 6.31 16 45 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 46 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 47 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -80.83 410.75 1.36 -79.47 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -0.56 Total: 17.81 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 6.00 Total: -12.46 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -5.70 Total: -97.10 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: 0.75 Total: -23.76 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -80.83 1.36 -79.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267120859.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.444 kcal (2) G-P(sol) polarization free energy of solvation -80.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds