Wall clock time and date at job start Sat Apr 11 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35456 * 128.00154 * 2 1 4 4 O 1.34033 * 106.44337 * 180.23416 * 3 2 1 5 5 N 1.20927 * 111.56884 * 359.74681 * 4 3 2 6 6 C 1.30177 * 111.60064 * 359.97438 * 5 4 3 7 7 C 1.50707 * 126.79688 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.46656 * 90.02792 * 7 6 5 9 9 C 1.46906 * 110.99573 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47107 * 35.00181 * 9 8 7 11 11 C 1.52999 * 109.46945 * 155.00126 * 9 8 7 12 12 N 1.46499 * 109.46894 * 304.99926 * 11 9 8 13 13 C 1.34779 * 119.99897 * 180.02562 * 12 11 9 14 14 O 1.21282 * 119.99673 * 0.02562 * 13 12 11 15 15 C 1.50704 * 120.00103 * 179.97438 * 13 12 11 16 16 S 1.81001 * 109.47017 * 179.97438 * 15 13 12 17 17 C 1.76197 * 99.99689 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00311 * 0.02562 * 17 16 15 19 19 C 1.38799 * 119.99753 * 180.02562 * 17 16 15 20 20 N 1.31637 * 120.00322 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00090 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46995 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47105 * 119.99738 * 21 19 17 24 24 H 1.48496 * 109.47144 * 239.99765 * 21 19 17 25 25 C 1.53005 * 109.46776 * 274.99857 * 9 8 7 26 26 C 1.53007 * 109.46419 * 179.97438 * 25 9 8 27 27 C 1.52996 * 109.47220 * 299.99801 * 25 9 8 28 28 H 1.09001 * 109.47179 * 270.16494 * 1 2 3 29 29 H 1.09001 * 109.47340 * 30.16715 * 1 2 3 30 30 H 1.09004 * 109.46531 * 150.17118 * 1 2 3 31 31 H 1.08002 * 126.77817 * 359.95917 * 3 2 1 32 32 H 1.08990 * 109.47142 * 330.02777 * 7 6 5 33 33 H 1.09004 * 109.46726 * 210.02675 * 7 6 5 34 34 H 1.00896 * 111.00219 * 303.95295 * 8 7 6 35 35 H 1.09001 * 109.47111 * 64.99627 * 11 9 8 36 36 H 1.08996 * 109.46970 * 185.00055 * 11 9 8 37 37 H 0.96998 * 120.00369 * 359.97438 * 12 11 9 38 38 H 1.09001 * 109.46901 * 299.99721 * 15 13 12 39 39 H 1.08996 * 109.46633 * 59.99836 * 15 13 12 40 40 H 0.96993 * 119.99870 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.47030 * 60.00801 * 25 9 8 42 42 H 1.08999 * 109.47348 * 300.00253 * 26 25 9 43 43 H 1.09000 * 109.46804 * 60.00738 * 26 25 9 44 44 H 1.08999 * 109.46775 * 180.02562 * 26 25 9 45 45 H 1.09002 * 109.47032 * 60.00580 * 27 25 9 46 46 H 1.09007 * 109.46876 * 180.02562 * 27 25 9 47 47 H 1.08999 * 109.47254 * 300.00141 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3410 1.0674 0.0000 4 8 3.5876 0.5749 -0.0053 5 7 3.5878 -0.6344 -0.0033 6 6 2.3776 -1.1138 0.0038 7 6 1.9829 -2.5683 0.0077 8 7 1.8615 -3.0389 1.3940 9 6 1.4765 -4.4560 1.4370 10 1 1.9399 -4.9838 0.6035 11 6 1.9469 -5.0725 2.7559 12 7 3.3871 -4.8535 2.9109 13 6 4.0247 -5.3138 4.0056 14 8 3.4062 -5.9096 4.8619 15 6 5.5064 -5.0890 4.1649 16 16 6.0628 -5.8182 5.7252 17 6 7.7779 -5.4205 5.6542 18 1 8.1719 -4.8785 4.8073 19 6 8.6224 -5.8040 6.6868 20 7 8.1421 -6.4642 7.7193 21 14 10.4406 -5.3817 6.6120 22 1 10.7255 -4.6411 5.3568 23 1 10.8009 -4.5366 7.7787 24 1 11.2408 -6.6323 6.6408 25 6 -0.0454 -4.5742 1.3329 26 6 -0.4463 -6.0502 1.3770 27 6 -0.6958 -3.8333 2.5029 28 1 -0.3633 0.0030 1.0277 29 1 -0.3634 0.8885 -0.5164 30 1 -0.3632 -0.8916 -0.5112 31 1 2.0575 2.1095 -0.0006 32 1 2.7440 -3.1527 -0.5091 33 1 1.0262 -2.6864 -0.5012 34 1 2.7165 -2.8805 1.9058 35 1 1.4169 -4.6043 3.5853 36 1 1.7406 -6.1427 2.7506 37 1 3.8820 -4.3779 2.2255 38 1 6.0361 -5.5572 3.3352 39 1 5.7129 -4.0188 4.1702 40 1 8.7323 -6.7318 8.4410 41 1 -0.3806 -4.1351 0.3932 42 1 0.0170 -6.5777 0.5432 43 1 -0.1112 -6.4897 2.3165 44 1 -1.5305 -6.1345 1.3024 45 1 -0.4101 -2.7819 2.4710 46 1 -1.7800 -3.9180 2.4289 47 1 -0.3606 -4.2726 3.4425 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271808453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:49 Heat of formation + Delta-G solvation = -10.553535 kcal Electronic energy + Delta-G solvation = -27215.767256 eV Core-core repulsion = 23333.841227 eV Total energy + Delta-G solvation = -3881.926029 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.87380 -40.95427 -39.30076 -36.50639 -35.29340 -34.61012 -34.38667 -32.88481 -31.42419 -29.13969 -28.76161 -27.96847 -27.69228 -26.41748 -24.35750 -22.57638 -22.06311 -21.87726 -20.28472 -19.70885 -18.57942 -18.52060 -17.90518 -17.61773 -16.97924 -16.90758 -16.41811 -16.14914 -15.99235 -15.81331 -15.18717 -14.76973 -14.67468 -14.42409 -14.34718 -14.14868 -14.01752 -13.95375 -13.57345 -13.51610 -13.19173 -13.16626 -12.93607 -12.85972 -12.71854 -12.63711 -12.61751 -12.07309 -11.83059 -11.75702 -11.72081 -11.36497 -11.18194 -11.02843 -10.96881 -10.31825 -10.20115 -10.18776 -9.53901 -8.69699 -8.37447 -6.15636 0.61577 1.22550 1.24096 1.39377 1.43819 1.54022 1.55936 2.18546 2.24862 2.46681 2.96616 2.97256 3.27527 3.31332 3.53721 3.63227 3.88903 4.00433 4.05619 4.08959 4.22356 4.26402 4.36463 4.37858 4.41949 4.44582 4.55593 4.64457 4.72125 4.82268 4.88738 4.91505 4.93934 4.96932 5.06973 5.12143 5.20070 5.24916 5.35183 5.39474 5.42130 5.52282 5.60070 5.85826 6.11065 6.17448 6.33113 7.03957 7.13479 7.34845 8.72091 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010570 B = 0.002578 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.326547 B =10860.381259 C =13054.927372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.196 4.196 3 C -0.062 4.062 4 O 0.084 5.916 5 N -0.397 5.397 6 C 0.007 3.993 7 C 0.141 3.859 8 N -0.676 5.676 9 C 0.093 3.907 10 H 0.066 0.934 11 C 0.115 3.885 12 N -0.717 5.717 13 C 0.537 3.463 14 O -0.559 6.559 15 C -0.132 4.132 16 S -0.145 6.145 17 C -0.547 4.547 18 H 0.080 0.920 19 C 0.014 3.986 20 N -0.910 5.910 21 Si 0.999 3.001 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.272 1.272 25 C -0.071 4.071 26 C -0.155 4.155 27 C -0.140 4.140 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.254 0.746 32 H 0.047 0.953 33 H 0.115 0.885 34 H 0.338 0.662 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.407 0.593 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.272 0.728 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.046 0.954 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.147 14.047 -22.926 33.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.200 4.200 3 C -0.142 4.142 4 O 0.019 5.981 5 N -0.103 5.103 6 C -0.151 4.151 7 C 0.012 3.988 8 N -0.310 5.310 9 C -0.017 4.017 10 H 0.084 0.916 11 C -0.008 4.008 12 N -0.372 5.372 13 C 0.322 3.678 14 O -0.437 6.437 15 C -0.283 4.283 16 S 0.082 5.918 17 C -0.695 4.695 18 H 0.098 0.902 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.821 3.179 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.197 1.197 25 C -0.091 4.091 26 C -0.212 4.212 27 C -0.197 4.197 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.269 0.731 32 H 0.065 0.935 33 H 0.133 0.867 34 H 0.158 0.842 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.243 0.757 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -20.582 12.654 -21.302 32.211 hybrid contribution 2.194 0.646 -0.974 2.485 sum -18.389 13.300 -22.276 31.800 Atomic orbital electron populations 1.20132 0.85421 1.04027 1.03167 1.21676 1.00005 0.90847 1.07509 1.26579 0.81888 1.02872 1.02911 1.84776 1.30733 1.15101 1.67446 1.73879 1.23770 0.92311 1.20366 1.23713 0.88615 0.99391 1.03427 1.20283 1.02201 0.85954 0.90337 1.60481 1.39722 1.18104 1.12694 1.21801 0.97664 0.87044 0.95170 0.91645 1.21771 0.79218 1.01141 0.98696 1.45817 1.10077 1.59159 1.22137 1.19996 0.88544 0.77772 0.81451 1.90694 1.68427 1.41922 1.42649 1.23380 0.95263 1.05817 1.03829 1.85523 1.08618 1.74831 1.22822 1.23222 0.93445 1.42881 1.09939 0.90153 1.26130 1.04975 0.94149 0.93862 1.70183 1.37898 1.37385 1.09212 0.84903 0.75902 0.78309 0.78812 1.18239 1.19792 1.19748 1.20999 0.91563 0.96142 1.00372 1.21952 1.02217 0.95289 1.01791 1.21764 0.99923 1.01048 0.97002 0.90726 0.89416 0.90523 0.73060 0.93452 0.86669 0.84243 0.91389 0.90971 0.75658 0.87417 0.87638 0.91914 0.89171 0.92036 0.93532 0.91306 0.91767 0.92272 0.94421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.37 71.24 0.74 0.23 16 2 C -0.20 -2.58 6.32 -19.74 -0.12 -2.71 16 3 C -0.06 -0.72 12.26 67.18 0.82 0.10 16 4 O 0.08 1.63 11.20 71.69 0.80 2.43 16 5 N -0.40 -8.94 12.07 -49.56 -0.60 -9.53 16 6 C 0.01 0.13 6.84 43.58 0.30 0.43 16 7 C 0.14 1.98 5.99 85.56 0.51 2.49 16 8 N -0.68 -10.70 5.52 -495.55 -2.74 -13.44 16 9 C 0.09 1.40 2.03 44.92 0.09 1.49 16 10 H 0.07 0.88 7.80 -2.39 -0.02 0.86 16 11 C 0.12 2.60 4.59 86.38 0.40 3.00 16 12 N -0.72 -18.89 4.99 -463.06 -2.31 -21.20 16 13 C 0.54 20.40 7.85 87.66 0.69 21.09 16 14 O -0.56 -26.32 15.86 -3.04 -0.05 -26.37 16 15 C -0.13 -5.43 6.16 71.24 0.44 -4.99 16 16 S -0.15 -8.22 20.57 -56.49 -1.16 -9.39 16 17 C -0.55 -31.93 9.50 67.95 0.65 -31.28 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.79 5.49 84.86 0.47 1.26 16 20 N -0.91 -56.59 13.22 21.65 0.29 -56.31 16 21 Si 1.00 44.46 29.55 68.60 2.03 46.49 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 C -0.07 -0.88 2.83 -10.79 -0.03 -0.91 16 26 C -0.15 -1.95 8.84 71.98 0.64 -1.31 16 27 C -0.14 -2.06 8.69 71.98 0.63 -1.43 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.08 0.47 7.65 -2.38 -0.02 0.45 16 31 H 0.25 0.50 8.06 -2.91 -0.02 0.48 16 32 H 0.05 0.69 8.05 -2.39 -0.02 0.67 16 33 H 0.12 1.12 6.94 -2.38 -0.02 1.11 16 34 H 0.34 6.57 6.71 -89.70 -0.60 5.97 16 35 H 0.07 1.77 6.17 -2.39 -0.01 1.76 16 36 H 0.07 1.75 6.71 -2.39 -0.02 1.74 16 37 H 0.41 8.59 7.37 -92.71 -0.68 7.90 16 38 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 39 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 40 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 41 H 0.09 0.84 7.45 -2.39 -0.02 0.82 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.05 0.74 6.54 -2.39 -0.02 0.73 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.06 1.01 7.60 -2.39 -0.02 1.00 16 46 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 47 H 0.04 0.70 6.32 -2.39 -0.02 0.68 16 Total: -1.00 -79.87 398.59 2.18 -77.69 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -0.29 Total: 22.18 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 6.21 Total: -12.56 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -5.36 Total: -100.47 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.75 Total: -23.94 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.16 Total: -9.39 kcal Total: -79.87 2.18 -77.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271808453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.137 kcal (2) G-P(sol) polarization free energy of solvation -79.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds