Wall clock time and date at job start Sat Apr 11 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34484 * 126.16201 * 2 1 4 4 C 1.30252 * 108.70077 * 179.73734 * 3 2 1 5 5 O 1.33973 * 108.75981 * 359.97438 * 4 3 2 6 6 C 1.34324 * 126.17093 * 179.67999 * 2 1 3 7 7 C 1.50701 * 126.44037 * 0.25113 * 6 2 1 8 8 N 1.46898 * 109.47571 * 89.99482 * 7 6 2 9 9 C 1.46902 * 111.00056 * 174.32834 * 8 7 6 10 10 H 1.09002 * 109.46870 * 33.13946 * 9 8 7 11 11 C 1.53001 * 109.46590 * 153.13445 * 9 8 7 12 12 N 1.46493 * 109.47651 * 305.00244 * 11 9 8 13 13 C 1.34774 * 120.00413 * 180.02562 * 12 11 9 14 14 O 1.21283 * 119.99957 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00213 * 179.97438 * 13 12 11 16 16 S 1.81004 * 109.47082 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99791 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00175 * 0.02562 * 17 16 15 19 19 C 1.38799 * 119.99739 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00041 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99969 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46968 * 59.99915 * 21 19 17 23 23 H 1.48501 * 109.46937 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46982 * 300.00107 * 21 19 17 25 25 C 1.52997 * 109.47161 * 273.13467 * 9 8 7 26 26 C 1.53004 * 109.46995 * 178.32007 * 25 9 8 27 27 C 1.53001 * 109.47418 * 298.31884 * 25 9 8 28 28 H 1.09001 * 109.46840 * 90.03593 * 1 2 3 29 29 H 1.09001 * 109.47129 * 210.02933 * 1 2 3 30 30 H 1.08989 * 109.47610 * 330.03091 * 1 2 3 31 31 H 1.08000 * 125.62267 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.47291 * 209.99607 * 7 6 2 33 33 H 1.09003 * 109.47081 * 329.99462 * 7 6 2 34 34 H 1.00901 * 110.99971 * 298.28341 * 8 7 6 35 35 H 1.08997 * 109.47164 * 65.00386 * 11 9 8 36 36 H 1.09004 * 109.46863 * 184.99612 * 11 9 8 37 37 H 0.97002 * 120.00172 * 359.97438 * 12 11 9 38 38 H 1.09002 * 109.47194 * 299.99647 * 15 13 12 39 39 H 1.09000 * 109.46876 * 60.00262 * 15 13 12 40 40 H 0.97002 * 119.99980 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.47017 * 58.31963 * 25 9 8 42 42 H 1.09000 * 109.46893 * 65.74461 * 26 25 9 43 43 H 1.09002 * 109.47217 * 185.75050 * 26 25 9 44 44 H 1.09001 * 109.46636 * 305.74664 * 26 25 9 45 45 H 1.08995 * 109.46875 * 59.99898 * 27 25 9 46 46 H 1.08991 * 109.47209 * 179.97438 * 27 25 9 47 47 H 1.09001 * 109.47091 * 300.00034 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5430 0.6949 0.0057 5 8 3.5734 -0.6444 0.0100 6 6 2.2998 -1.0843 0.0061 7 6 1.8494 -2.5225 0.0088 8 7 1.7078 -2.9940 -1.3753 9 6 1.4003 -4.4299 -1.4134 10 1 0.7948 -4.6949 -0.5467 11 6 0.6269 -4.7519 -2.6936 12 7 -0.5606 -3.8979 -2.7747 13 6 -1.3984 -4.0065 -3.8248 14 8 -1.1695 -4.8117 -4.7025 15 6 -2.6203 -3.1283 -3.9079 16 16 -3.5351 -3.5092 -5.4226 17 6 -4.8715 -2.3715 -5.2671 18 1 -4.9259 -1.7162 -4.4104 19 6 -5.8537 -2.3167 -6.2463 20 7 -5.7866 -3.1144 -7.2912 21 14 -7.2702 -1.1100 -6.0818 22 1 -6.7370 0.2751 -6.0306 23 1 -8.1763 -1.2482 -7.2502 24 1 -8.0228 -1.3972 -4.8343 25 6 2.7034 -5.2313 -1.3895 26 6 2.3822 -6.7273 -1.3869 27 6 3.5347 -4.8904 -2.6279 28 1 -0.3633 -0.0006 -1.0277 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3634 0.8901 0.5133 31 1 4.4065 1.3436 0.0067 32 1 2.5884 -3.1337 0.5270 33 1 0.8897 -2.6017 0.5196 34 1 1.0076 -2.4610 -1.8690 35 1 1.2646 -4.5706 -3.5587 36 1 0.3218 -5.7983 -2.6803 37 1 -0.7443 -3.2547 -2.0723 38 1 -3.2578 -3.3099 -3.0426 39 1 -2.3154 -2.0819 -3.9215 40 1 -6.4733 -3.0764 -7.9753 41 1 3.2684 -4.9795 -0.4920 42 1 1.9075 -6.9985 -2.3299 43 1 3.3039 -7.2966 -1.2670 44 1 1.7062 -6.9522 -0.5619 45 1 3.7635 -3.8247 -2.6298 46 1 4.4632 -5.4610 -2.6107 47 1 2.9697 -5.1423 -3.5254 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271809754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:55 Heat of formation + Delta-G solvation = -22.211111 kcal Electronic energy + Delta-G solvation = -27339.098675 eV Core-core repulsion = 23456.667136 eV Total energy + Delta-G solvation = -3882.431539 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.61770 -39.77070 -38.24241 -35.51312 -34.75626 -34.11939 -32.44198 -31.73747 -30.00853 -28.60788 -27.36757 -27.05198 -25.51653 -25.00408 -23.60935 -22.49080 -21.05402 -20.52907 -19.44053 -17.96440 -17.48332 -17.02640 -16.71841 -16.50602 -15.98608 -15.66736 -14.89162 -14.84400 -14.81271 -14.79926 -14.49488 -13.97633 -13.70789 -13.59310 -13.45000 -13.33024 -13.10747 -12.86546 -12.58521 -12.51845 -12.25342 -12.22043 -12.12090 -11.62830 -11.30004 -11.26551 -11.13483 -11.06271 -11.04757 -10.79439 -10.76722 -10.67213 -9.84415 -9.47093 -9.09731 -9.07805 -8.96178 -8.88422 -8.26461 -6.52023 -6.22933 -3.93911 1.11344 2.35603 2.44747 2.96611 3.03558 3.22686 3.26395 3.29226 3.60824 3.73205 3.86007 4.19052 4.30066 4.37209 4.49904 4.61583 4.67930 4.77200 4.89345 5.02233 5.07064 5.10784 5.12248 5.24612 5.30419 5.34743 5.40787 5.46873 5.49827 5.57520 5.64480 5.69560 5.77211 5.79145 5.83834 5.87134 5.88465 6.04477 6.08710 6.09971 6.23633 6.45855 6.50419 6.84368 7.42124 7.55460 7.58175 8.33411 8.53434 9.22280 10.84410 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010049 B = 0.002726 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.630097 B =10270.287371 C =12590.240058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.006 4.006 3 N -0.486 5.486 4 C 0.172 3.828 5 O -0.196 6.196 6 C -0.039 4.039 7 C 0.143 3.857 8 N -0.680 5.680 9 C 0.083 3.917 10 H 0.056 0.944 11 C 0.113 3.887 12 N -0.743 5.743 13 C 0.533 3.467 14 O -0.513 6.513 15 C -0.154 4.154 16 S -0.058 6.058 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.079 4.079 26 C -0.154 4.154 27 C -0.144 4.144 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.249 0.751 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.349 0.651 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.391 0.609 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.269 0.731 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.067 0.933 46 H 0.047 0.953 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.720 0.851 19.368 27.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 N -0.215 5.215 4 C -0.055 4.055 5 O -0.081 6.081 6 C -0.093 4.093 7 C 0.014 3.986 8 N -0.315 5.315 9 C -0.027 4.027 10 H 0.074 0.926 11 C -0.011 4.011 12 N -0.399 5.399 13 C 0.319 3.681 14 O -0.386 6.386 15 C -0.305 4.305 16 S 0.168 5.832 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.098 4.098 26 C -0.212 4.212 27 C -0.202 4.202 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.264 0.736 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.170 0.830 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.225 0.775 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 20.532 -0.073 17.610 27.050 hybrid contribution -1.754 1.598 1.769 2.960 sum 18.779 1.526 19.379 27.028 Atomic orbital electron populations 1.20197 0.86450 1.03447 1.03431 1.21579 0.98011 0.87662 1.05413 1.70374 1.01433 1.31745 1.17943 1.28015 0.97558 0.79398 1.00539 1.84437 1.30009 1.24443 1.69245 1.22913 0.80948 0.97230 1.08215 1.20272 1.00461 0.86703 0.91172 1.60385 1.54279 1.03667 1.13171 1.21855 0.96046 0.87475 0.97284 0.92602 1.21660 0.86162 0.95468 0.97763 1.46061 1.26238 1.42107 1.25518 1.20299 0.83502 0.83493 0.80767 1.90714 1.73674 1.36291 1.37927 1.23539 0.97623 1.01627 1.07708 1.85415 1.25368 1.52021 1.20363 1.22821 1.10472 1.24240 1.10971 0.90976 1.24989 0.97896 0.96195 0.94451 1.70007 1.34273 1.36475 1.09518 0.86230 0.80781 0.80695 0.77836 1.19906 1.20801 1.19933 1.21022 0.94887 0.94144 0.99791 1.21945 1.01713 0.95189 1.02353 1.21816 0.98907 1.02465 0.96974 0.90177 0.90844 0.90337 0.73551 0.88873 0.91432 0.82961 0.90042 0.90482 0.77510 0.89270 0.89213 0.92102 0.91080 0.91934 0.92360 0.92720 0.91348 0.93351 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.22 36.01 0.37 -0.25 16 2 C -0.01 -0.06 7.11 -82.81 -0.59 -0.65 16 3 N -0.49 -5.33 11.29 -11.18 -0.13 -5.46 16 4 C 0.17 1.41 13.23 52.09 0.69 2.10 16 5 O -0.20 -1.86 10.78 5.37 0.06 -1.80 16 6 C -0.04 -0.36 6.95 -35.69 -0.25 -0.61 16 7 C 0.14 0.98 5.79 -4.98 -0.03 0.95 16 8 N -0.68 -5.36 5.57 -107.99 -0.60 -5.96 16 9 C 0.08 0.63 2.00 -67.71 -0.14 0.50 16 10 H 0.06 0.38 7.83 -51.93 -0.41 -0.03 16 11 C 0.11 1.22 4.60 -4.04 -0.02 1.20 16 12 N -0.74 -9.03 4.97 -60.30 -0.30 -9.33 16 13 C 0.53 9.49 7.85 -10.99 -0.09 9.41 16 14 O -0.51 -11.30 15.86 5.56 0.09 -11.22 16 15 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 16 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 17 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 18 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 21 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 C -0.08 -0.58 2.84 -90.62 -0.26 -0.84 16 26 C -0.15 -1.08 8.72 37.16 0.32 -0.76 16 27 C -0.14 -1.23 8.67 37.16 0.32 -0.90 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.42 7.16 -51.93 -0.37 0.05 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.25 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.09 0.59 7.43 -51.93 -0.39 0.20 16 33 H 0.07 0.35 7.16 -51.93 -0.37 -0.02 16 34 H 0.35 2.99 6.77 -39.29 -0.27 2.72 16 35 H 0.08 1.00 6.13 -51.93 -0.32 0.69 16 36 H 0.08 0.88 6.87 -51.93 -0.36 0.53 16 37 H 0.39 3.59 7.41 -40.82 -0.30 3.29 16 38 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 39 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.07 0.49 7.48 -51.93 -0.39 0.10 16 42 H 0.06 0.50 6.90 -51.93 -0.36 0.14 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.66 7.65 -51.93 -0.40 0.26 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.54 6.29 -51.93 -0.33 0.22 16 LS Contribution 398.50 15.07 6.01 6.01 Total: -1.00 -36.02 398.50 -7.79 -43.81 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.18 Total: 2.22 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 0.76 Total: -5.44 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -0.29 Total: -46.04 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.15 Total: -13.02 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.02 -7.79 -43.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271809754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.602 kcal (2) G-P(sol) polarization free energy of solvation -36.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds