Wall clock time and date at job start Sat Apr 11 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30941 * 122.90552 * 2 1 4 4 C 1.29429 * 117.36223 * 179.97438 * 3 2 1 5 5 C 1.50694 * 124.80224 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.47077 * 300.01791 * 5 4 3 7 7 C 1.52999 * 109.47376 * 60.02201 * 5 4 3 8 8 S 1.70952 * 110.39202 * 359.71837 * 4 3 2 9 9 C 1.35665 * 122.90261 * 179.97438 * 2 1 3 10 10 C 1.46684 * 126.12687 * 0.02562 * 9 2 1 11 11 O 1.21685 * 120.00360 * 355.44465 * 10 9 2 12 12 N 1.34783 * 119.99493 * 175.44225 * 10 9 2 13 13 C 1.46504 * 119.99711 * 185.86216 * 12 10 9 14 14 C 1.52999 * 109.46893 * 264.90829 * 13 12 10 15 15 O 1.42901 * 109.47591 * 65.00185 * 14 13 12 16 16 C 1.46499 * 120.00191 * 5.86735 * 12 10 9 17 17 C 1.52998 * 109.46740 * 276.38175 * 16 12 10 18 18 N 1.46498 * 109.47128 * 180.02562 * 17 16 12 19 19 C 1.36939 * 120.00350 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99570 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00543 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99641 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00295 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47318 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47305 * 120.00175 * 23 21 19 26 26 H 1.48508 * 109.47370 * 240.00108 * 23 21 19 27 27 H 1.09001 * 109.47463 * 270.00690 * 1 2 3 28 28 H 1.08999 * 109.46930 * 30.00539 * 1 2 3 29 29 H 1.09002 * 109.47219 * 150.00353 * 1 2 3 30 30 H 1.09009 * 109.47012 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.46799 * 60.00287 * 6 5 4 32 32 H 1.08999 * 109.47021 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47112 * 300.00415 * 6 5 4 34 34 H 1.08999 * 109.46942 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.46631 * 299.99735 * 7 5 4 36 36 H 1.08992 * 109.47274 * 60.00070 * 7 5 4 37 37 H 1.08994 * 109.47058 * 24.90632 * 13 12 10 38 38 H 1.09003 * 109.47044 * 144.91067 * 13 12 10 39 39 H 1.09005 * 109.47188 * 185.00049 * 14 13 12 40 40 H 1.09005 * 109.47330 * 304.99929 * 14 13 12 41 41 H 0.96700 * 113.99957 * 179.97438 * 15 14 13 42 42 H 1.08995 * 109.47170 * 36.37930 * 16 12 10 43 43 H 1.08995 * 109.47228 * 156.37971 * 16 12 10 44 44 H 1.09008 * 109.47179 * 300.00033 * 17 16 12 45 45 H 1.09000 * 109.47844 * 59.99697 * 17 16 12 46 46 H 0.96998 * 119.99868 * 0.02562 * 18 17 16 47 47 H 0.96997 * 120.00343 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2184 1.0993 0.0000 4 6 3.5066 0.9743 0.0005 5 6 4.4822 2.1228 0.0000 6 6 4.2627 2.9779 -1.2497 7 6 4.2626 2.9791 1.2489 8 16 3.9447 -0.6781 0.0090 9 6 2.2440 -1.1390 0.0005 10 6 1.7190 -2.5087 0.0006 11 8 0.5203 -2.7009 0.0839 12 7 2.5644 -3.5544 -0.0916 13 6 2.0357 -4.9145 -0.2210 14 6 1.9628 -5.5669 1.1610 15 8 1.0136 -4.8676 1.9685 16 6 4.0120 -3.3308 -0.0624 17 6 4.4995 -2.9626 -1.4651 18 7 5.9471 -2.7396 -1.4361 19 6 6.6103 -2.3970 -2.5842 20 1 6.0660 -2.2907 -3.5109 21 6 7.9819 -2.1852 -2.5566 22 7 8.6451 -2.3141 -1.4270 23 14 8.8863 -1.7171 -4.1225 24 1 7.9202 -1.6378 -5.2474 25 1 9.5430 -0.3979 -3.9394 26 1 9.9151 -2.7443 -4.4258 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 5.5007 1.7344 0.0002 31 1 3.2443 3.3663 -1.2499 32 1 4.9687 3.8084 -1.2502 33 1 4.4192 2.3679 -2.1394 34 1 4.9680 3.8100 1.2482 35 1 3.2442 3.3675 1.2486 36 1 4.4190 2.3700 2.1391 37 1 1.0379 -4.8765 -0.6579 38 1 2.6922 -5.4998 -0.8649 39 1 1.6542 -6.6071 1.0560 40 1 2.9437 -5.5251 1.6348 41 1 0.9150 -5.2278 2.8605 42 1 4.2402 -2.5177 0.6266 43 1 4.5134 -4.2398 0.2696 44 1 4.2712 -3.7758 -2.1543 45 1 3.9980 -2.0535 -1.7972 46 1 6.4359 -2.8354 -0.6038 47 1 9.6035 -2.1665 -1.4077 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272307578.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:57 Heat of formation + Delta-G solvation = -26.617026 kcal Electronic energy + Delta-G solvation = -28839.604642 eV Core-core repulsion = 24956.982048 eV Total energy + Delta-G solvation = -3882.622594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.20533 -39.30994 -36.91588 -36.08252 -35.37486 -34.23698 -31.68591 -30.89779 -29.98592 -28.04248 -27.23408 -27.09215 -24.96532 -23.92750 -23.24624 -21.91097 -20.96629 -20.24543 -18.38186 -17.85783 -17.55713 -17.09485 -16.30064 -16.13930 -15.51210 -15.16254 -14.76472 -14.59487 -14.28650 -14.22490 -13.95407 -13.68844 -13.40297 -13.35374 -13.10295 -13.00992 -12.80848 -12.34275 -12.21908 -12.14438 -11.99043 -11.65359 -11.52040 -11.43005 -11.33877 -11.07611 -10.99054 -10.95771 -10.89604 -10.78556 -10.15877 -10.09782 -9.86742 -9.64672 -9.15932 -9.07776 -8.84262 -8.58781 -8.20224 -7.05804 -5.87835 -3.17665 0.59791 1.62662 2.02925 2.74277 3.01693 3.36617 3.43806 3.44677 3.45110 4.18754 4.23234 4.49483 4.74752 4.90956 4.99142 5.05758 5.07131 5.15359 5.16332 5.25559 5.34931 5.45938 5.48428 5.54231 5.56996 5.64268 5.70409 5.81900 5.83671 5.85984 5.90663 5.96964 5.98327 6.06497 6.10075 6.28106 6.32630 6.37132 6.53297 6.58964 6.68309 7.43608 7.60535 7.62177 8.00468 8.29079 8.33198 9.41838 9.92887 10.29139 11.34517 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008085 B = 0.005220 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3462.551960 B = 5362.957123 C = 8049.303061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.146 3.854 3 N -0.488 5.488 4 C 0.017 3.983 5 C -0.021 4.021 6 C -0.138 4.138 7 C -0.137 4.137 8 S 0.276 5.724 9 C -0.335 4.335 10 C 0.605 3.395 11 O -0.517 6.517 12 N -0.604 5.604 13 C 0.119 3.881 14 C 0.059 3.941 15 O -0.555 6.555 16 C 0.092 3.908 17 C 0.130 3.870 18 N -0.724 5.724 19 C -0.238 4.238 20 H 0.071 0.929 21 C -0.008 4.008 22 N -0.931 5.931 23 Si 0.904 3.096 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.371 0.629 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.029 0.971 45 H 0.031 0.969 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.356 0.850 7.104 13.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.005 3.995 3 N -0.203 5.203 4 C -0.256 4.256 5 C -0.043 4.043 6 C -0.196 4.196 7 C -0.196 4.196 8 S 0.539 5.461 9 C -0.459 4.459 10 C 0.394 3.606 11 O -0.394 6.394 12 N -0.337 5.337 13 C -0.004 4.004 14 C -0.020 4.020 15 O -0.359 6.359 16 C -0.034 4.034 17 C 0.000 4.000 18 N -0.369 5.369 19 C -0.369 4.369 20 H 0.089 0.911 21 C -0.205 4.205 22 N -0.579 5.579 23 Si 0.735 3.265 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.216 0.784 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.047 0.953 45 H 0.048 0.952 46 H 0.218 0.782 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.194 1.151 6.431 12.961 hybrid contribution 0.243 -0.203 -0.088 0.329 sum -10.951 0.948 6.343 12.691 Atomic orbital electron populations 1.20525 0.86824 1.03641 1.03064 1.20477 0.98111 0.85386 0.95540 1.66048 1.04734 1.31452 1.18108 1.28027 0.94741 1.02639 1.00160 1.19858 0.95627 0.91362 0.97422 1.21769 1.02394 0.99208 0.96276 1.21774 1.02604 0.99170 0.96004 1.85657 1.01852 0.96624 1.61928 1.25589 0.97915 0.98789 1.23623 1.16661 0.85692 0.82392 0.75889 1.90746 1.14304 1.84796 1.49579 1.47545 1.06102 1.06337 1.73714 1.21532 1.01499 0.81894 0.95458 1.22622 0.92109 0.94687 0.92624 1.86713 1.62602 1.58773 1.27819 1.22093 0.79640 1.02265 0.99355 1.21233 0.87559 0.98266 0.92919 1.42163 1.00525 1.84125 1.10097 1.19197 0.90278 1.39109 0.88328 0.91102 1.24696 0.96409 1.02393 0.96961 1.69651 1.07728 1.56018 1.24538 0.86162 0.79817 0.77815 0.82684 1.20522 1.21748 1.21809 0.90694 0.91380 0.88858 0.88888 0.91792 0.91863 0.92265 0.91820 0.91709 0.92723 0.88807 0.88768 0.92918 0.93558 0.78362 0.90646 0.88645 0.95326 0.95153 0.78171 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 9.64 36.01 0.35 -0.84 16 2 C 0.15 2.46 6.79 -83.89 -0.57 1.89 16 3 N -0.49 -8.16 10.48 -7.71 -0.08 -8.24 16 4 C 0.02 0.27 5.90 -13.29 -0.08 0.19 16 5 C -0.02 -0.29 3.35 -91.77 -0.31 -0.60 16 6 C -0.14 -1.76 9.17 37.16 0.34 -1.42 16 7 C -0.14 -1.59 9.17 37.16 0.34 -1.25 16 8 S 0.28 4.59 15.40 -107.50 -1.66 2.94 16 9 C -0.33 -5.76 5.98 -37.09 -0.22 -5.98 16 10 C 0.61 10.45 7.34 -12.85 -0.09 10.36 16 11 O -0.52 -9.67 13.31 4.02 0.05 -9.61 16 12 N -0.60 -9.12 2.45 -175.23 -0.43 -9.55 16 13 C 0.12 1.48 5.80 -4.04 -0.02 1.45 16 14 C 0.06 0.62 7.39 37.16 0.27 0.90 16 15 O -0.56 -6.95 12.81 -36.41 -0.47 -7.41 16 16 C 0.09 1.42 5.08 -4.04 -0.02 1.40 16 17 C 0.13 2.42 5.32 -4.04 -0.02 2.40 16 18 N -0.72 -16.41 5.47 -59.91 -0.33 -16.74 16 19 C -0.24 -6.17 9.99 -15.06 -0.15 -6.32 16 20 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 22 N -0.93 -26.17 13.06 55.49 0.72 -25.44 16 23 Si 0.90 21.36 29.55 -169.99 -5.02 16.34 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.09 1.44 6.12 -51.93 -0.32 1.13 16 30 H 0.09 1.29 8.12 -51.92 -0.42 0.87 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.26 7.36 -51.93 -0.38 0.88 16 38 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.37 2.89 9.12 45.56 0.42 3.30 16 42 H 0.08 1.21 4.59 -23.12 -0.11 1.10 16 43 H 0.10 1.33 8.02 -51.93 -0.42 0.91 16 44 H 0.03 0.55 8.14 -51.92 -0.42 0.13 16 45 H 0.03 0.61 5.79 -42.76 -0.25 0.36 16 46 H 0.38 9.07 7.67 -40.82 -0.31 8.75 16 47 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 390.88 15.07 5.89 5.89 Total: -1.00 -32.09 390.88 -8.00 -40.09 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -6.41 Total: 9.89 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.28 Total: 1.85 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.11 Total: -59.97 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.41 Total: -17.03 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.66 Total: 2.94 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.09 -8.00 -40.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272307578.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.472 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds