Wall clock time and date at job start Sat Apr 11 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30941 * 122.90552 * 2 1 4 4 C 1.29429 * 117.36223 * 179.97438 * 3 2 1 5 5 C 1.50694 * 124.80224 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.47077 * 300.01791 * 5 4 3 7 7 C 1.52999 * 109.47376 * 60.02201 * 5 4 3 8 8 S 1.70952 * 110.39202 * 359.71837 * 4 3 2 9 9 C 1.35665 * 122.90261 * 179.97438 * 2 1 3 10 10 C 1.46684 * 126.12687 * 0.02562 * 9 2 1 11 11 O 1.21685 * 120.00360 * 355.44465 * 10 9 2 12 12 N 1.34783 * 119.99493 * 175.44225 * 10 9 2 13 13 C 1.46504 * 119.99711 * 185.86216 * 12 10 9 14 14 C 1.52999 * 109.46893 * 264.90829 * 13 12 10 15 15 O 1.42901 * 109.47591 * 65.00185 * 14 13 12 16 16 C 1.46499 * 120.00191 * 5.86735 * 12 10 9 17 17 C 1.52998 * 109.46740 * 276.38175 * 16 12 10 18 18 N 1.46498 * 109.47128 * 180.02562 * 17 16 12 19 19 C 1.36939 * 120.00350 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99570 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00543 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99641 * 0.02562 * 21 19 18 23 23 Si 1.86790 * 120.00295 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47318 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47305 * 120.00175 * 23 21 19 26 26 H 1.48508 * 109.47370 * 240.00108 * 23 21 19 27 27 H 1.09001 * 109.47463 * 270.00690 * 1 2 3 28 28 H 1.08999 * 109.46930 * 30.00539 * 1 2 3 29 29 H 1.09002 * 109.47219 * 150.00353 * 1 2 3 30 30 H 1.09009 * 109.47012 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.46799 * 60.00287 * 6 5 4 32 32 H 1.08999 * 109.47021 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47112 * 300.00415 * 6 5 4 34 34 H 1.08999 * 109.46942 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.46631 * 299.99735 * 7 5 4 36 36 H 1.08992 * 109.47274 * 60.00070 * 7 5 4 37 37 H 1.08994 * 109.47058 * 24.90632 * 13 12 10 38 38 H 1.09003 * 109.47044 * 144.91067 * 13 12 10 39 39 H 1.09005 * 109.47188 * 185.00049 * 14 13 12 40 40 H 1.09005 * 109.47330 * 304.99929 * 14 13 12 41 41 H 0.96700 * 113.99957 * 179.97438 * 15 14 13 42 42 H 1.08995 * 109.47170 * 36.37930 * 16 12 10 43 43 H 1.08995 * 109.47228 * 156.37971 * 16 12 10 44 44 H 1.09008 * 109.47179 * 300.00033 * 17 16 12 45 45 H 1.09000 * 109.47844 * 59.99697 * 17 16 12 46 46 H 0.96998 * 119.99868 * 0.02562 * 18 17 16 47 47 H 0.96997 * 120.00343 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2184 1.0993 0.0000 4 6 3.5066 0.9743 0.0005 5 6 4.4822 2.1228 0.0000 6 6 4.2627 2.9779 -1.2497 7 6 4.2626 2.9791 1.2489 8 16 3.9447 -0.6781 0.0090 9 6 2.2440 -1.1390 0.0005 10 6 1.7190 -2.5087 0.0006 11 8 0.5203 -2.7009 0.0839 12 7 2.5644 -3.5544 -0.0916 13 6 2.0357 -4.9145 -0.2210 14 6 1.9628 -5.5669 1.1610 15 8 1.0136 -4.8676 1.9685 16 6 4.0120 -3.3308 -0.0624 17 6 4.4995 -2.9626 -1.4651 18 7 5.9471 -2.7396 -1.4361 19 6 6.6103 -2.3970 -2.5842 20 1 6.0660 -2.2907 -3.5109 21 6 7.9819 -2.1852 -2.5566 22 7 8.6451 -2.3141 -1.4270 23 14 8.8863 -1.7171 -4.1225 24 1 7.9202 -1.6378 -5.2474 25 1 9.5430 -0.3979 -3.9394 26 1 9.9151 -2.7443 -4.4258 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 5.5007 1.7344 0.0002 31 1 3.2443 3.3663 -1.2499 32 1 4.9687 3.8084 -1.2502 33 1 4.4192 2.3679 -2.1394 34 1 4.9680 3.8100 1.2482 35 1 3.2442 3.3675 1.2486 36 1 4.4190 2.3700 2.1391 37 1 1.0379 -4.8765 -0.6579 38 1 2.6922 -5.4998 -0.8649 39 1 1.6542 -6.6071 1.0560 40 1 2.9437 -5.5251 1.6348 41 1 0.9150 -5.2278 2.8605 42 1 4.2402 -2.5177 0.6266 43 1 4.5134 -4.2398 0.2696 44 1 4.2712 -3.7758 -2.1543 45 1 3.9980 -2.0535 -1.7972 46 1 6.4359 -2.8354 -0.6038 47 1 9.6035 -2.1665 -1.4077 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272307578.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:57 Heat of formation + Delta-G solvation = -49.392378 kcal Electronic energy + Delta-G solvation = -28840.592256 eV Core-core repulsion = 24956.982048 eV Total energy + Delta-G solvation = -3883.610207 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.47917 -40.55961 -37.98567 -37.41379 -36.47747 -35.84268 -33.35320 -32.21640 -31.16699 -29.52552 -28.49688 -28.07243 -26.15765 -25.68973 -24.30359 -23.50709 -22.12863 -21.43536 -19.75642 -19.23873 -18.78945 -18.45359 -17.53764 -17.36671 -16.82923 -16.44113 -16.35978 -15.87991 -15.55595 -15.45894 -15.20660 -15.02463 -14.94169 -14.64745 -14.31979 -14.16336 -14.04092 -13.58798 -13.32341 -13.30116 -13.07204 -12.96027 -12.91565 -12.86303 -12.63964 -12.56056 -12.32720 -12.15705 -12.12070 -12.04620 -11.93052 -11.82901 -11.06459 -11.01636 -10.81824 -10.36748 -10.24348 -9.86055 -9.50196 -8.95501 -7.91988 -5.20202 -0.69634 0.33450 0.73605 1.44337 1.49511 1.51998 1.59602 1.81360 2.13459 2.58740 3.00335 3.34425 3.42442 3.54366 3.74876 3.78353 3.96626 4.01544 4.09497 4.13089 4.19700 4.27109 4.28172 4.37440 4.46053 4.53293 4.64398 4.71039 4.75161 4.79105 4.83271 4.87575 4.91339 4.92662 4.94530 5.02932 5.07715 5.25410 5.30090 5.41515 5.46516 5.55113 6.16551 6.29327 6.70441 6.96121 7.03683 7.38225 8.04915 8.33270 9.30617 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008085 B = 0.005220 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3462.551960 B = 5362.957123 C = 8049.303061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.136 3.864 3 N -0.495 5.495 4 C 0.020 3.980 5 C -0.026 4.026 6 C -0.133 4.133 7 C -0.130 4.130 8 S 0.257 5.743 9 C -0.348 4.348 10 C 0.600 3.400 11 O -0.537 6.537 12 N -0.598 5.598 13 C 0.109 3.891 14 C 0.061 3.939 15 O -0.585 6.585 16 C 0.103 3.897 17 C 0.136 3.864 18 N -0.727 5.727 19 C -0.236 4.236 20 H 0.069 0.931 21 C -0.059 4.059 22 N -0.960 5.960 23 Si 0.959 3.041 24 H -0.273 1.273 25 H -0.293 1.293 26 H -0.294 1.294 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.389 0.611 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.030 0.970 45 H 0.021 0.979 46 H 0.380 0.620 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.483 0.890 7.211 13.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.005 4.005 3 N -0.211 5.211 4 C -0.253 4.253 5 C -0.048 4.048 6 C -0.192 4.192 7 C -0.189 4.189 8 S 0.520 5.480 9 C -0.472 4.472 10 C 0.389 3.611 11 O -0.416 6.416 12 N -0.330 5.330 13 C -0.012 4.012 14 C -0.017 4.017 15 O -0.392 6.392 16 C -0.022 4.022 17 C 0.007 3.993 18 N -0.370 5.370 19 C -0.368 4.368 20 H 0.087 0.913 21 C -0.252 4.252 22 N -0.610 5.610 23 Si 0.789 3.211 24 H -0.197 1.197 25 H -0.220 1.220 26 H -0.222 1.222 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.134 0.866 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.237 0.763 42 H 0.091 0.909 43 H 0.135 0.865 44 H 0.048 0.952 45 H 0.038 0.962 46 H 0.213 0.787 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.355 1.158 6.538 13.154 hybrid contribution 0.211 -0.205 -0.124 0.319 sum -11.144 0.953 6.414 12.893 Atomic orbital electron populations 1.20510 0.85504 1.03802 1.03613 1.20886 0.99161 0.85417 0.95014 1.66104 1.04933 1.31355 1.18686 1.28483 0.94987 1.02891 0.98901 1.20043 0.94759 0.91073 0.98947 1.21748 1.03007 0.99457 0.94980 1.21742 1.03034 0.99423 0.94684 1.85635 1.02047 0.97655 1.62642 1.25683 0.97984 0.99154 1.24426 1.16768 0.85689 0.82800 0.75882 1.90729 1.14988 1.85107 1.50759 1.47580 1.05579 1.07063 1.72806 1.21838 1.01207 0.80781 0.97383 1.22653 0.92307 0.95613 0.91165 1.86660 1.63177 1.59959 1.29413 1.21924 0.79957 1.03146 0.97192 1.21232 0.85314 0.97691 0.95042 1.42179 1.02006 1.83856 1.09007 1.19437 0.90536 1.37674 0.89147 0.91337 1.25306 0.97228 1.03411 0.99278 1.69764 1.07578 1.57633 1.26056 0.85295 0.78616 0.77046 0.80135 1.19735 1.22001 1.22169 0.89866 0.89950 0.89834 0.89200 0.91956 0.89459 0.93889 0.89452 0.92113 0.92872 0.90078 0.86592 0.90024 0.92813 0.76251 0.90871 0.86539 0.95222 0.96163 0.78745 0.93910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.17 9.64 71.24 0.69 -1.48 16 2 C 0.14 4.56 6.79 42.09 0.29 4.84 16 3 N -0.50 -16.36 10.48 -178.29 -1.87 -18.23 16 4 C 0.02 0.63 5.90 88.46 0.52 1.15 16 5 C -0.03 -0.70 3.35 -11.54 -0.04 -0.74 16 6 C -0.13 -3.25 9.17 71.98 0.66 -2.59 16 7 C -0.13 -2.82 9.17 71.98 0.66 -2.16 16 8 S 0.26 8.56 15.40 -56.49 -0.87 7.69 16 9 C -0.35 -11.99 5.98 23.88 0.14 -11.85 16 10 C 0.60 20.61 7.34 86.45 0.63 21.24 16 11 O -0.54 -20.08 13.31 -3.17 -0.04 -20.12 16 12 N -0.60 -17.52 2.45 -826.53 -2.02 -19.54 16 13 C 0.11 2.55 5.80 86.38 0.50 3.06 16 14 C 0.06 1.16 7.39 71.98 0.53 1.69 16 15 O -0.58 -13.84 12.81 -147.85 -1.89 -15.73 16 16 C 0.10 3.08 5.08 86.38 0.44 3.52 16 17 C 0.14 4.99 5.32 86.38 0.46 5.45 16 18 N -0.73 -32.63 5.47 -343.44 -1.88 -34.50 16 19 C -0.24 -12.12 9.99 84.03 0.84 -11.28 16 20 H 0.07 3.50 7.83 -2.91 -0.02 3.48 16 21 C -0.06 -3.14 5.50 84.86 0.47 -2.67 16 22 N -0.96 -53.94 13.06 21.65 0.28 -53.66 16 23 Si 0.96 43.64 29.55 68.60 2.03 45.67 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 26 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 27 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 28 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 29 H 0.08 2.58 6.12 -2.39 -0.01 2.57 16 30 H 0.09 2.43 8.12 -2.38 -0.02 2.41 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 2.12 7.36 -2.39 -0.02 2.11 16 38 H 0.12 2.15 8.11 -2.39 -0.02 2.13 16 39 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.39 5.48 9.12 -74.06 -0.68 4.81 16 42 H 0.07 2.31 4.59 -20.71 -0.10 2.21 16 43 H 0.12 3.01 8.02 -2.39 -0.02 2.99 16 44 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.02 0.82 5.79 -8.22 -0.05 0.77 16 46 H 0.38 17.81 7.67 -92.71 -0.71 17.10 16 47 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -67.59 390.88 0.02 -67.57 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -0.51 Total: 32.65 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 6.79 Total: 8.19 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -5.49 Total: -125.93 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -1.94 Total: -35.85 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 8.56 SS G_CDS: -0.87 Total: 7.69 kcal Total: -67.59 0.02 -67.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272307578.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.177 kcal (2) G-P(sol) polarization free energy of solvation -67.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds