Wall clock time and date at job start Sat Apr 11 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30945 * 122.90135 * 2 1 4 4 C 1.29438 * 117.36152 * 180.34533 * 3 2 1 5 5 C 1.50694 * 124.80337 * 179.72759 * 4 3 2 6 6 C 1.53003 * 109.47017 * 59.98073 * 5 4 3 7 7 C 1.53001 * 109.46944 * 179.97438 * 5 4 3 8 8 C 1.52998 * 109.47429 * 299.97621 * 5 4 3 9 9 S 1.70958 * 110.38969 * 359.70786 * 4 3 2 10 10 C 1.35664 * 122.90311 * 179.80374 * 2 1 3 11 11 C 1.46679 * 126.13212 * 359.96933 * 10 2 1 12 12 O 1.21685 * 120.00070 * 359.70680 * 11 10 2 13 13 N 1.34779 * 119.99941 * 179.71457 * 11 10 2 14 14 C 1.46494 * 119.99921 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47283 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.47269 * 305.00317 * 15 14 13 17 17 O 1.42903 * 109.46459 * 65.00211 * 15 14 13 18 18 C 1.53001 * 109.47376 * 185.00021 * 15 14 13 19 19 N 1.46497 * 109.46900 * 180.02562 * 18 15 14 20 20 C 1.36940 * 119.99699 * 180.02562 * 19 18 15 21 21 H 1.08003 * 120.00008 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99902 * 179.97438 * 20 19 18 23 23 N 1.31615 * 120.00079 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00056 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47296 * 89.99782 * 24 22 20 26 26 H 1.48501 * 109.47407 * 210.00114 * 24 22 20 27 27 H 1.48497 * 109.47304 * 330.00034 * 24 22 20 28 28 H 1.08999 * 109.47362 * 270.19454 * 1 2 3 29 29 H 1.08997 * 109.47162 * 30.19543 * 1 2 3 30 30 H 1.09001 * 109.46946 * 150.19006 * 1 2 3 31 31 H 1.08997 * 109.47032 * 59.99583 * 6 5 4 32 32 H 1.09003 * 109.46648 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.46682 * 299.99474 * 6 5 4 34 34 H 1.08995 * 109.47427 * 59.99856 * 7 5 4 35 35 H 1.08998 * 109.47258 * 180.02562 * 7 5 4 36 36 H 1.09008 * 109.47217 * 300.00095 * 7 5 4 37 37 H 1.08999 * 109.46645 * 60.00362 * 8 5 4 38 38 H 1.08998 * 109.47032 * 180.02562 * 8 5 4 39 39 H 1.09000 * 109.46870 * 300.00453 * 8 5 4 40 40 H 0.96999 * 119.99691 * 359.97438 * 13 11 10 41 41 H 1.09005 * 109.47040 * 60.00167 * 14 13 11 42 42 H 1.08999 * 109.47079 * 299.99869 * 14 13 11 43 43 H 0.96700 * 114.00311 * 60.00313 * 17 15 14 44 44 H 1.08999 * 109.47164 * 300.00361 * 18 15 14 45 45 H 1.08997 * 109.47124 * 60.00063 * 18 15 14 46 46 H 0.96996 * 120.00310 * 359.97438 * 19 18 15 47 47 H 0.97001 * 120.00199 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5066 0.9745 -0.0069 5 6 4.4821 2.1230 -0.0140 6 6 4.2691 2.9808 1.2350 7 6 5.9117 1.5779 -0.0204 8 6 4.2561 2.9766 -1.2635 9 16 3.9447 -0.6780 -0.0064 10 6 2.2439 -1.1390 0.0039 11 6 1.7191 -2.5087 0.0092 12 8 0.5174 -2.6998 0.0159 13 7 2.5680 -3.5556 0.0069 14 6 2.0438 -4.9235 0.0128 15 6 3.2083 -5.9160 0.0080 16 1 3.8623 -5.7047 -0.8380 17 8 3.9472 -5.7890 1.2246 18 6 2.6637 -7.3408 -0.1116 19 7 3.7788 -8.2909 -0.1156 20 6 3.5330 -9.6344 -0.2151 21 1 2.5173 -9.9935 -0.2912 22 6 4.5896 -10.5348 -0.2194 23 7 4.3534 -11.8261 -0.3146 24 14 6.3464 -9.9138 -0.0887 25 1 6.7402 -9.8400 1.3412 26 1 7.2551 -10.8446 -0.8050 27 1 6.4407 -8.5630 -0.6983 28 1 -0.3634 0.0035 1.0276 29 1 -0.3633 0.8882 -0.5168 30 1 -0.3633 -0.8917 -0.5109 31 1 4.4301 2.3727 2.1251 32 1 4.9750 3.8113 1.2300 33 1 3.2506 3.3691 1.2396 34 1 6.0635 0.9668 -0.9101 35 1 6.6173 2.4086 -0.0251 36 1 6.0727 0.9698 0.8698 37 1 3.2376 3.3649 -1.2588 38 1 4.9620 3.8070 -1.2688 39 1 4.4078 2.3654 -2.1532 40 1 3.5259 -3.4032 0.0014 41 1 1.4291 -5.0809 -0.8736 42 1 1.4389 -5.0770 0.9064 43 1 3.4269 -5.9634 2.0208 44 1 2.0098 -7.5520 0.7345 45 1 2.1001 -7.4376 -1.0395 46 1 4.6911 -7.9684 -0.0484 47 1 5.0917 -12.4552 -0.3180 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272593317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:00 Heat of formation + Delta-G solvation = -46.249938 kcal Electronic energy + Delta-G solvation = -26943.630749 eV Core-core repulsion = 23060.156808 eV Total energy + Delta-G solvation = -3883.473941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.77177 -39.63152 -37.87497 -37.17216 -34.63260 -34.18559 -31.75852 -31.50283 -29.99394 -28.32587 -27.98268 -27.78336 -25.68110 -25.26789 -22.63234 -21.71739 -21.36938 -20.54294 -19.60456 -18.12204 -17.75212 -17.30197 -16.26222 -16.22234 -15.92471 -15.67428 -15.07121 -14.81622 -14.59849 -14.48635 -14.22460 -14.02759 -13.81497 -13.77914 -13.29141 -13.00371 -12.97900 -12.76343 -12.69936 -12.48641 -12.41986 -12.20759 -12.06299 -12.00199 -11.63925 -11.54558 -11.45877 -11.32771 -10.89675 -10.86602 -10.35599 -10.20398 -10.02663 -9.82832 -9.78707 -9.58670 -9.34233 -9.03483 -8.95473 -7.28788 -5.80051 -3.16533 -0.08798 0.81684 1.24617 2.12679 2.85727 2.92321 3.37606 3.42296 3.43861 3.44959 4.15359 4.32842 4.39358 4.45397 4.52846 4.57636 4.65254 4.72703 4.83510 5.02155 5.07185 5.09069 5.22793 5.31808 5.35044 5.35268 5.38927 5.44174 5.48250 5.48610 5.57578 5.59353 5.63843 5.74460 5.75986 5.77434 5.79084 6.03367 6.19906 6.37868 6.50465 7.15704 7.32152 7.72203 7.90671 7.95635 8.38334 9.17739 9.89598 10.09186 11.37904 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017596 B = 0.002221 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.872939 B =12601.251741 C =13879.884653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.152 3.848 3 N -0.475 5.475 4 C 0.076 3.924 5 C 0.007 3.993 6 C -0.135 4.135 7 C -0.158 4.158 8 C -0.135 4.135 9 S 0.167 5.833 10 C -0.308 4.308 11 C 0.597 3.403 12 O -0.525 6.525 13 N -0.717 5.717 14 C 0.091 3.909 15 C 0.084 3.916 16 H 0.104 0.896 17 O -0.556 6.556 18 C 0.132 3.868 19 N -0.749 5.749 20 C -0.249 4.249 21 H 0.090 0.910 22 C 0.005 3.995 23 N -0.932 5.932 24 Si 0.888 3.112 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.277 1.277 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.401 0.599 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.377 0.623 44 H 0.033 0.967 45 H 0.038 0.962 46 H 0.366 0.634 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.080 33.698 1.103 33.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.014 3.986 3 N -0.189 5.189 4 C -0.199 4.199 5 C 0.003 3.997 6 C -0.193 4.193 7 C -0.216 4.216 8 C -0.193 4.193 9 S 0.427 5.573 10 C -0.431 4.431 11 C 0.382 3.618 12 O -0.403 6.403 13 N -0.368 5.368 14 C -0.033 4.033 15 C 0.024 3.976 16 H 0.122 0.878 17 O -0.362 6.362 18 C 0.003 3.997 19 N -0.396 5.396 20 C -0.378 4.378 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.580 5.580 24 Si 0.719 3.281 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.203 1.203 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.236 0.764 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.225 0.775 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.200 0.800 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.354 33.390 0.671 33.399 hybrid contribution 0.396 0.134 0.431 0.601 sum 0.751 33.524 1.102 33.551 Atomic orbital electron populations 1.20668 0.85955 1.04500 1.03727 1.20674 0.98623 0.84864 0.94440 1.65988 1.04271 1.31190 1.17441 1.27487 0.94277 0.97974 1.00205 1.19347 0.91273 0.90611 0.98454 1.21853 1.03113 0.99094 0.95279 1.22073 0.94343 1.02193 1.02980 1.21852 1.03093 0.99127 0.95264 1.83954 1.04982 1.02226 1.66185 1.25503 0.96637 0.99032 1.21969 1.16658 0.86112 0.82406 0.76620 1.90793 1.14196 1.84989 1.50333 1.45819 1.09853 1.06003 1.75123 1.22156 0.97318 0.80024 1.03793 1.22461 0.92456 0.94300 0.88353 0.87780 1.86543 1.41171 1.92842 1.15633 1.21158 0.91723 0.86994 0.99809 1.42555 1.03168 1.03336 1.90501 1.19039 0.95119 0.80532 1.43139 0.89239 1.24681 0.97569 0.95078 1.01744 1.69705 1.30909 1.00391 1.56999 0.86488 0.85988 0.77767 0.77896 1.21002 1.21795 1.20294 0.90093 0.90787 0.88121 0.92353 0.91309 0.91300 0.91597 0.90283 0.91580 0.91299 0.91306 0.92356 0.76368 0.89837 0.90443 0.77529 0.94930 0.94422 0.80015 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 9.69 36.00 0.35 -0.57 16 2 C 0.15 1.75 6.79 -83.89 -0.57 1.18 16 3 N -0.47 -5.11 10.48 -7.70 -0.08 -5.19 16 4 C 0.08 0.68 5.78 -13.29 -0.08 0.60 16 5 C 0.01 0.04 0.99 -155.66 -0.15 -0.11 16 6 C -0.13 -0.76 8.45 37.16 0.31 -0.45 16 7 C -0.16 -0.76 7.53 37.16 0.28 -0.48 16 8 C -0.13 -0.76 8.45 37.16 0.31 -0.44 16 9 S 0.17 1.47 20.68 -107.50 -2.22 -0.75 16 10 C -0.31 -3.55 6.48 -37.10 -0.24 -3.79 16 11 C 0.60 7.74 7.78 -12.85 -0.10 7.64 16 12 O -0.52 -8.03 14.27 5.20 0.07 -7.96 16 13 N -0.72 -8.33 5.50 -61.62 -0.34 -8.67 16 14 C 0.09 1.11 5.31 -4.04 -0.02 1.08 16 15 C 0.08 1.17 3.09 -26.73 -0.08 1.09 16 16 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 17 O -0.56 -7.89 13.03 -35.23 -0.46 -8.35 16 18 C 0.13 2.36 5.92 -4.04 -0.02 2.34 16 19 N -0.75 -17.51 5.30 -59.91 -0.32 -17.83 16 20 C -0.25 -7.02 10.47 -15.06 -0.16 -7.17 16 21 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 22 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 23 N -0.93 -29.28 13.97 55.49 0.78 -28.51 16 24 Si 0.89 22.27 27.74 -169.99 -4.71 17.56 16 25 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.10 1.16 6.02 -51.93 -0.31 0.85 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.32 7.92 -51.93 -0.41 -0.09 16 35 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.32 7.92 -51.92 -0.41 -0.09 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.40 4.21 7.66 -40.82 -0.31 3.89 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.38 4.38 9.05 45.56 0.41 4.80 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.37 8.54 5.40 -40.82 -0.22 8.32 16 47 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 398.24 15.07 6.00 6.00 Total: -1.00 -34.28 398.24 -8.32 -42.59 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.77 Total: 10.13 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -0.27 Total: 0.98 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.04 Total: -60.21 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.38 Total: -16.31 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.56 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.22 Total: -0.75 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.28 -8.32 -42.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272593317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.659 kcal (2) G-P(sol) polarization free energy of solvation -34.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds