Wall clock time and date at job start Sat Apr 11 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30943 * 122.90303 * 2 1 4 4 C 1.29436 * 117.36398 * 180.35070 * 3 2 1 5 5 C 1.50703 * 124.80371 * 179.73409 * 4 3 2 6 6 C 1.53001 * 109.47483 * 59.97211 * 5 4 3 7 7 C 1.52998 * 109.46851 * 179.97438 * 5 4 3 8 8 C 1.52997 * 109.46711 * 299.97031 * 5 4 3 9 9 S 1.70946 * 110.39141 * 359.70439 * 4 3 2 10 10 C 1.35666 * 122.90986 * 179.80805 * 2 1 3 11 11 C 1.46682 * 126.12257 * 359.96487 * 10 2 1 12 12 O 1.21680 * 120.00692 * 359.71175 * 11 10 2 13 13 N 1.34783 * 119.99500 * 179.71472 * 11 10 2 14 14 C 1.46497 * 119.99638 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46900 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.47164 * 60.00014 * 15 14 13 17 17 O 1.42903 * 109.47171 * 299.99748 * 15 14 13 18 18 C 1.53003 * 109.47376 * 180.02562 * 15 14 13 19 19 N 1.46494 * 109.47283 * 185.00021 * 18 15 14 20 20 C 1.36937 * 120.00022 * 179.97438 * 19 18 15 21 21 H 1.08002 * 120.00269 * 0.02562 * 20 19 18 22 22 C 1.38819 * 120.00106 * 179.97438 * 20 19 18 23 23 N 1.31616 * 119.99813 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99927 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46910 * 90.00368 * 24 22 20 26 26 H 1.48500 * 109.47076 * 210.00564 * 24 22 20 27 27 H 1.48496 * 109.47174 * 330.00806 * 24 22 20 28 28 H 1.09000 * 109.47216 * 270.18837 * 1 2 3 29 29 H 1.09000 * 109.47525 * 30.18649 * 1 2 3 30 30 H 1.09001 * 109.46945 * 150.19308 * 1 2 3 31 31 H 1.09001 * 109.47190 * 59.99739 * 6 5 4 32 32 H 1.08993 * 109.47048 * 180.02562 * 6 5 4 33 33 H 1.09005 * 109.46805 * 299.99949 * 6 5 4 34 34 H 1.08997 * 109.47325 * 59.99782 * 7 5 4 35 35 H 1.09004 * 109.47399 * 179.97438 * 7 5 4 36 36 H 1.08997 * 109.47390 * 299.99609 * 7 5 4 37 37 H 1.08994 * 109.47417 * 60.00647 * 8 5 4 38 38 H 1.09005 * 109.47325 * 180.02562 * 8 5 4 39 39 H 1.08997 * 109.47289 * 300.00110 * 8 5 4 40 40 H 0.96996 * 120.00052 * 0.02562 * 13 11 10 41 41 H 1.08999 * 109.47200 * 60.00094 * 14 13 11 42 42 H 1.08997 * 109.47487 * 300.00148 * 14 13 11 43 43 H 0.96700 * 114.00311 * 300.00378 * 17 15 14 44 44 H 1.09005 * 109.46682 * 304.99749 * 18 15 14 45 45 H 1.08999 * 109.47221 * 64.99915 * 18 15 14 46 46 H 0.96999 * 120.00388 * 359.97438 * 19 18 15 47 47 H 0.96997 * 120.00150 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2182 1.0994 0.0000 4 6 3.5065 0.9745 -0.0070 5 6 4.4821 2.1231 -0.0140 6 6 4.2691 2.9808 1.2350 7 6 5.9116 1.5780 -0.0206 8 6 4.2559 2.9766 -1.2635 9 16 3.9447 -0.6779 -0.0065 10 6 2.2440 -1.1389 0.0038 11 6 1.7191 -2.5086 0.0091 12 8 0.5175 -2.6998 0.0158 13 7 2.5680 -3.5555 0.0067 14 6 2.0438 -4.9235 0.0126 15 6 3.2084 -5.9159 0.0090 16 1 3.8227 -5.7584 0.8955 17 8 4.0019 -5.7149 -1.1623 18 6 2.6610 -7.3446 0.0145 19 7 3.7717 -8.2926 0.1314 20 6 3.5229 -9.6390 0.1577 21 1 2.5078 -10.0019 0.0917 22 6 4.5754 -10.5373 0.2680 23 7 5.8125 -10.0951 0.3478 24 14 4.2359 -12.3739 0.3044 25 1 4.2518 -12.9078 -1.0811 26 1 5.2817 -13.0547 1.1094 27 1 2.9042 -12.6190 0.9140 28 1 -0.3633 0.0034 1.0276 29 1 -0.3634 0.8883 -0.5167 30 1 -0.3633 -0.8917 -0.5108 31 1 4.4301 2.3727 2.1252 32 1 4.9744 3.8118 1.2297 33 1 3.2506 3.3692 1.2396 34 1 6.0634 0.9670 -0.9104 35 1 6.6173 2.4087 -0.0261 36 1 6.0728 0.9699 0.8695 37 1 3.2376 3.3650 -1.2588 38 1 4.9618 3.8072 -1.2688 39 1 4.4077 2.3656 -2.1532 40 1 3.5259 -3.4032 0.0019 41 1 1.4291 -5.0809 -0.8736 42 1 1.4389 -5.0770 0.9062 43 1 3.5188 -5.8388 -1.9908 44 1 1.9847 -7.4713 0.8599 45 1 2.1210 -7.5304 -0.9139 46 1 4.6834 -7.9668 0.1903 47 1 6.5479 -10.7227 0.4252 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272593318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:02 Heat of formation + Delta-G solvation = -50.125165 kcal Electronic energy + Delta-G solvation = -26859.463981 eV Core-core repulsion = 22975.821998 eV Total energy + Delta-G solvation = -3883.641983 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.71567 -39.56191 -37.73619 -37.10876 -34.50295 -34.04805 -31.70084 -31.34523 -29.71651 -28.11758 -27.93080 -27.74018 -25.51459 -25.16599 -22.88668 -21.58857 -21.40943 -20.49166 -19.52207 -18.05413 -17.30428 -17.13452 -16.19648 -16.14937 -15.86419 -15.59615 -14.98859 -14.76582 -14.49399 -14.45523 -14.16214 -14.03889 -13.77540 -13.65806 -13.05772 -12.95715 -12.89271 -12.72655 -12.66080 -12.44840 -12.36884 -12.16101 -11.95992 -11.90168 -11.58604 -11.49859 -11.40833 -10.99079 -10.83717 -10.68205 -10.28867 -10.20026 -9.95605 -9.83335 -9.77029 -9.55437 -9.26929 -8.97770 -8.92677 -6.96894 -5.78639 -3.08486 -0.03208 0.87592 1.30656 2.18007 2.93311 2.98334 3.42188 3.47165 3.48908 3.49272 4.20306 4.37714 4.44274 4.50988 4.58412 4.68402 4.77352 4.79283 4.91832 5.07143 5.13821 5.18021 5.27327 5.36434 5.39466 5.39918 5.48230 5.52505 5.53108 5.56893 5.62757 5.64623 5.73035 5.80288 5.81752 5.89485 6.07870 6.16032 6.28898 6.47277 6.62795 7.23389 7.38039 7.66213 7.87232 7.98101 8.39366 9.51084 10.07137 10.42786 11.43698 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020373 B = 0.002023 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.064513 B =13834.762262 C =14900.143648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.151 3.849 3 N -0.475 5.475 4 C 0.075 3.925 5 C 0.007 3.993 6 C -0.134 4.134 7 C -0.158 4.158 8 C -0.134 4.134 9 S 0.171 5.829 10 C -0.308 4.308 11 C 0.596 3.404 12 O -0.527 6.527 13 N -0.715 5.715 14 C 0.090 3.910 15 C 0.088 3.912 16 H 0.106 0.894 17 O -0.553 6.553 18 C 0.128 3.872 19 N -0.726 5.726 20 C -0.244 4.244 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.930 5.930 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.403 0.597 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.374 0.626 44 H 0.029 0.971 45 H 0.024 0.976 46 H 0.388 0.612 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.963 29.619 -1.285 29.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.013 3.987 3 N -0.189 5.189 4 C -0.201 4.201 5 C 0.003 3.997 6 C -0.193 4.193 7 C -0.216 4.216 8 C -0.193 4.193 9 S 0.431 5.569 10 C -0.431 4.431 11 C 0.382 3.618 12 O -0.405 6.405 13 N -0.367 5.367 14 C -0.034 4.034 15 C 0.028 3.972 16 H 0.123 0.877 17 O -0.357 6.357 18 C -0.001 4.001 19 N -0.371 5.371 20 C -0.375 4.375 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.578 5.578 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.238 0.762 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.221 0.779 44 H 0.047 0.953 45 H 0.042 0.958 46 H 0.223 0.777 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.656 29.347 -0.827 29.478 hybrid contribution -0.704 -1.065 -0.299 1.312 sum -3.360 28.281 -1.126 28.503 Atomic orbital electron populations 1.20659 0.86008 1.04441 1.03694 1.20662 0.98595 0.84882 0.94593 1.65983 1.04288 1.31203 1.17462 1.27483 0.94279 0.98050 1.00298 1.19343 0.91302 0.90614 0.98415 1.21850 1.03080 0.99084 0.95309 1.22072 0.94307 1.02190 1.03031 1.21849 1.03049 0.99122 0.95301 1.83992 1.04878 1.02058 1.66018 1.25518 0.96701 0.99047 1.21863 1.16665 0.86112 0.82423 0.76646 1.90784 1.14236 1.85011 1.50500 1.45815 1.09952 1.05977 1.74908 1.22172 0.97504 0.80140 1.03563 1.22422 0.91399 0.93773 0.89590 0.87669 1.86579 1.40590 1.92912 1.15668 1.21191 0.92334 0.87697 0.98860 1.42232 1.04113 1.01974 1.88742 1.19218 0.92913 0.82528 1.42867 0.91178 1.24770 0.95249 0.98106 1.02759 1.69673 0.97817 1.33417 1.56895 0.86170 0.77065 0.85339 0.77477 1.21671 1.21721 1.20733 0.90132 0.90834 0.88154 0.92350 0.91331 0.91336 0.91555 0.90302 0.91563 0.91334 0.91333 0.92347 0.76226 0.90656 0.90025 0.77926 0.95294 0.95836 0.77722 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.69 36.00 0.35 -0.60 16 2 C 0.15 1.80 6.79 -83.89 -0.57 1.23 16 3 N -0.48 -5.30 10.48 -7.70 -0.08 -5.38 16 4 C 0.07 0.70 5.78 -13.29 -0.08 0.62 16 5 C 0.01 0.05 0.99 -155.66 -0.15 -0.11 16 6 C -0.13 -0.80 8.45 37.16 0.31 -0.49 16 7 C -0.16 -0.82 7.53 37.16 0.28 -0.54 16 8 C -0.13 -0.80 8.45 37.16 0.31 -0.49 16 9 S 0.17 1.60 20.68 -107.50 -2.22 -0.62 16 10 C -0.31 -3.71 6.48 -37.09 -0.24 -3.95 16 11 C 0.60 8.09 7.78 -12.85 -0.10 7.99 16 12 O -0.53 -8.34 14.27 5.21 0.07 -8.26 16 13 N -0.72 -8.87 5.44 -61.62 -0.34 -9.21 16 14 C 0.09 1.18 5.34 -4.04 -0.02 1.15 16 15 C 0.09 1.33 3.09 -26.73 -0.08 1.25 16 16 H 0.11 1.66 8.14 -51.93 -0.42 1.23 16 17 O -0.55 -8.56 13.03 -35.23 -0.46 -9.02 16 18 C 0.13 2.44 5.90 -4.04 -0.02 2.42 16 19 N -0.73 -18.22 5.55 -59.91 -0.33 -18.56 16 20 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 24 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 1.19 6.02 -51.93 -0.31 0.88 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.35 7.92 -51.93 -0.41 -0.06 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.35 7.92 -51.93 -0.41 -0.06 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.40 4.60 7.53 -40.82 -0.31 4.29 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.37 4.78 9.05 45.56 0.41 5.19 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.39 10.43 7.67 -40.82 -0.31 10.12 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 401.36 15.07 6.05 6.05 Total: -1.00 -33.45 401.36 -8.67 -42.13 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -6.81 Total: 11.97 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -0.26 Total: 1.04 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -0.02 Total: -60.65 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.38 Total: -17.28 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.22 Total: -0.62 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.45 -8.67 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272593318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.997 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds