Wall clock time and date at job start Sat Apr 11 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30943 * 122.90303 * 2 1 4 4 C 1.29436 * 117.36398 * 180.35070 * 3 2 1 5 5 C 1.50703 * 124.80371 * 179.73409 * 4 3 2 6 6 C 1.53001 * 109.47483 * 59.97211 * 5 4 3 7 7 C 1.52998 * 109.46851 * 179.97438 * 5 4 3 8 8 C 1.52997 * 109.46711 * 299.97031 * 5 4 3 9 9 S 1.70946 * 110.39141 * 359.70439 * 4 3 2 10 10 C 1.35666 * 122.90986 * 179.80805 * 2 1 3 11 11 C 1.46682 * 126.12257 * 359.96487 * 10 2 1 12 12 O 1.21680 * 120.00692 * 359.71175 * 11 10 2 13 13 N 1.34783 * 119.99500 * 179.71472 * 11 10 2 14 14 C 1.46497 * 119.99638 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46900 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.47164 * 60.00014 * 15 14 13 17 17 O 1.42903 * 109.47171 * 299.99748 * 15 14 13 18 18 C 1.53003 * 109.47376 * 180.02562 * 15 14 13 19 19 N 1.46494 * 109.47283 * 185.00021 * 18 15 14 20 20 C 1.36937 * 120.00022 * 179.97438 * 19 18 15 21 21 H 1.08002 * 120.00269 * 0.02562 * 20 19 18 22 22 C 1.38819 * 120.00106 * 179.97438 * 20 19 18 23 23 N 1.31616 * 119.99813 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99927 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46910 * 90.00368 * 24 22 20 26 26 H 1.48500 * 109.47076 * 210.00564 * 24 22 20 27 27 H 1.48496 * 109.47174 * 330.00806 * 24 22 20 28 28 H 1.09000 * 109.47216 * 270.18837 * 1 2 3 29 29 H 1.09000 * 109.47525 * 30.18649 * 1 2 3 30 30 H 1.09001 * 109.46945 * 150.19308 * 1 2 3 31 31 H 1.09001 * 109.47190 * 59.99739 * 6 5 4 32 32 H 1.08993 * 109.47048 * 180.02562 * 6 5 4 33 33 H 1.09005 * 109.46805 * 299.99949 * 6 5 4 34 34 H 1.08997 * 109.47325 * 59.99782 * 7 5 4 35 35 H 1.09004 * 109.47399 * 179.97438 * 7 5 4 36 36 H 1.08997 * 109.47390 * 299.99609 * 7 5 4 37 37 H 1.08994 * 109.47417 * 60.00647 * 8 5 4 38 38 H 1.09005 * 109.47325 * 180.02562 * 8 5 4 39 39 H 1.08997 * 109.47289 * 300.00110 * 8 5 4 40 40 H 0.96996 * 120.00052 * 0.02562 * 13 11 10 41 41 H 1.08999 * 109.47200 * 60.00094 * 14 13 11 42 42 H 1.08997 * 109.47487 * 300.00148 * 14 13 11 43 43 H 0.96700 * 114.00311 * 300.00378 * 17 15 14 44 44 H 1.09005 * 109.46682 * 304.99749 * 18 15 14 45 45 H 1.08999 * 109.47221 * 64.99915 * 18 15 14 46 46 H 0.96999 * 120.00388 * 359.97438 * 19 18 15 47 47 H 0.96997 * 120.00150 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2182 1.0994 0.0000 4 6 3.5065 0.9745 -0.0070 5 6 4.4821 2.1231 -0.0140 6 6 4.2691 2.9808 1.2350 7 6 5.9116 1.5780 -0.0206 8 6 4.2559 2.9766 -1.2635 9 16 3.9447 -0.6779 -0.0065 10 6 2.2440 -1.1389 0.0038 11 6 1.7191 -2.5086 0.0091 12 8 0.5175 -2.6998 0.0158 13 7 2.5680 -3.5555 0.0067 14 6 2.0438 -4.9235 0.0126 15 6 3.2084 -5.9159 0.0090 16 1 3.8227 -5.7584 0.8955 17 8 4.0019 -5.7149 -1.1623 18 6 2.6610 -7.3446 0.0145 19 7 3.7717 -8.2926 0.1314 20 6 3.5229 -9.6390 0.1577 21 1 2.5078 -10.0019 0.0917 22 6 4.5754 -10.5373 0.2680 23 7 5.8125 -10.0951 0.3478 24 14 4.2359 -12.3739 0.3044 25 1 4.2518 -12.9078 -1.0811 26 1 5.2817 -13.0547 1.1094 27 1 2.9042 -12.6190 0.9140 28 1 -0.3633 0.0034 1.0276 29 1 -0.3634 0.8883 -0.5167 30 1 -0.3633 -0.8917 -0.5108 31 1 4.4301 2.3727 2.1252 32 1 4.9744 3.8118 1.2297 33 1 3.2506 3.3692 1.2396 34 1 6.0634 0.9670 -0.9104 35 1 6.6173 2.4087 -0.0261 36 1 6.0728 0.9699 0.8695 37 1 3.2376 3.3650 -1.2588 38 1 4.9618 3.8072 -1.2688 39 1 4.4077 2.3656 -2.1532 40 1 3.5259 -3.4032 0.0019 41 1 1.4291 -5.0809 -0.8736 42 1 1.4389 -5.0770 0.9062 43 1 3.5188 -5.8388 -1.9908 44 1 1.9847 -7.4713 0.8599 45 1 2.1210 -7.5304 -0.9139 46 1 4.6834 -7.9668 0.1903 47 1 6.5479 -10.7227 0.4252 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272593318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:02 Heat of formation + Delta-G solvation = -75.608258 kcal Electronic energy + Delta-G solvation = -26860.569011 eV Core-core repulsion = 22975.821998 eV Total energy + Delta-G solvation = -3884.747013 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.58984 -40.54772 -38.97190 -37.74654 -36.11928 -35.41972 -33.23527 -32.49316 -31.03679 -29.26963 -28.36136 -28.19893 -26.97596 -26.03262 -24.58049 -22.84283 -22.60052 -21.15291 -20.46578 -19.22728 -18.86036 -18.20153 -17.41127 -17.29498 -16.75958 -16.56525 -16.40572 -15.85662 -15.65165 -15.49565 -15.09735 -14.98504 -14.88483 -14.76511 -14.47610 -14.22333 -13.86691 -13.66143 -13.59156 -13.28567 -13.14998 -12.99519 -12.96660 -12.75904 -12.62301 -12.54396 -12.31538 -12.16894 -12.00617 -11.99367 -11.94383 -11.82719 -11.32779 -11.02108 -10.96217 -10.72143 -10.62575 -10.27226 -9.80264 -9.02041 -7.95581 -5.25112 -0.86816 0.09218 0.49899 1.30098 1.47563 1.49229 1.57687 1.89811 1.99832 2.55441 2.80632 3.34993 3.44708 3.51977 3.60423 3.69186 3.89557 3.90709 3.96323 4.02477 4.17585 4.23314 4.38442 4.58455 4.62403 4.65897 4.67008 4.69653 4.72894 4.83162 4.83799 4.92567 4.94875 4.95515 5.01593 5.11426 5.19046 5.22667 5.29711 5.34351 5.38299 5.47925 6.24013 6.26086 6.54238 6.75973 6.94874 7.32733 8.07635 8.30673 9.27627 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020373 B = 0.002023 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.064513 B =13834.762262 C =14900.143648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.144 3.856 3 N -0.493 5.493 4 C 0.078 3.922 5 C 0.004 3.996 6 C -0.132 4.132 7 C -0.159 4.159 8 C -0.132 4.132 9 S 0.204 5.796 10 C -0.337 4.337 11 C 0.596 3.404 12 O -0.555 6.555 13 N -0.709 5.709 14 C 0.102 3.898 15 C 0.107 3.893 16 H 0.100 0.900 17 O -0.563 6.563 18 C 0.124 3.876 19 N -0.740 5.740 20 C -0.248 4.248 21 H 0.077 0.923 22 C -0.076 4.076 23 N -0.968 5.968 24 Si 0.975 3.025 25 H -0.287 1.287 26 H -0.295 1.295 27 H -0.269 1.269 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.408 0.592 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.386 0.614 44 H 0.035 0.965 45 H 0.033 0.967 46 H 0.376 0.624 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.679 30.769 -1.451 30.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.006 3.994 3 N -0.207 5.207 4 C -0.197 4.197 5 C 0.000 4.000 6 C -0.191 4.191 7 C -0.217 4.217 8 C -0.191 4.191 9 S 0.465 5.535 10 C -0.461 4.461 11 C 0.383 3.617 12 O -0.436 6.436 13 N -0.360 5.360 14 C -0.022 4.022 15 C 0.047 3.953 16 H 0.118 0.882 17 O -0.369 6.369 18 C -0.004 4.004 19 N -0.383 5.383 20 C -0.380 4.380 21 H 0.095 0.905 22 C -0.269 4.269 23 N -0.618 5.618 24 Si 0.804 3.196 25 H -0.214 1.214 26 H -0.222 1.222 27 H -0.194 1.194 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.073 0.927 40 H 0.244 0.756 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.235 0.765 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.209 0.791 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.399 30.512 -1.005 30.622 hybrid contribution -0.796 -1.295 -0.268 1.544 sum -3.195 29.217 -1.273 29.418 Atomic orbital electron populations 1.20616 0.85711 1.04282 1.03853 1.20896 0.99202 0.85203 0.94145 1.66046 1.05057 1.30917 1.18691 1.28150 0.94333 0.98995 0.98197 1.19575 0.91409 0.89904 0.99100 1.21847 1.02975 0.99564 0.94685 1.22113 0.93580 1.03005 1.02961 1.21846 1.02954 0.99600 0.94665 1.83814 1.02643 1.01693 1.65355 1.25453 0.98568 0.98303 1.23770 1.16838 0.85780 0.83057 0.76022 1.90764 1.15353 1.85556 1.51897 1.45707 1.10174 1.05524 1.74607 1.21957 0.96382 0.79935 1.03919 1.22110 0.91690 0.91995 0.89502 0.88212 1.86558 1.41271 1.92776 1.16346 1.21394 0.90952 0.88821 0.99213 1.42417 1.05004 1.02112 1.88778 1.19644 0.93139 0.84046 1.41159 0.90512 1.25608 0.95178 1.02522 1.03556 1.69829 0.98596 1.34570 1.58807 0.85120 0.77140 0.80045 0.77312 1.21377 1.22190 1.19388 0.89790 0.89610 0.89551 0.92723 0.89048 0.92626 0.91620 0.88172 0.91627 0.92612 0.89053 0.92703 0.75570 0.90102 0.89945 0.76519 0.94685 0.94902 0.79132 0.93976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.84 9.69 71.23 0.69 -1.15 16 2 C 0.14 3.43 6.79 42.09 0.29 3.71 16 3 N -0.49 -10.71 10.48 -178.29 -1.87 -12.58 16 4 C 0.08 1.38 5.78 88.46 0.51 1.89 16 5 C 0.00 0.05 0.99 -52.93 -0.05 -0.01 16 6 C -0.13 -1.33 8.45 71.98 0.61 -0.72 16 7 C -0.16 -1.26 7.53 71.98 0.54 -0.72 16 8 C -0.13 -1.32 8.45 71.98 0.61 -0.72 16 9 S 0.20 3.61 20.68 -56.49 -1.17 2.44 16 10 C -0.34 -8.03 6.48 23.88 0.15 -7.87 16 11 C 0.60 16.03 7.78 86.45 0.67 16.70 16 12 O -0.55 -17.65 14.27 -4.28 -0.06 -17.71 16 13 N -0.71 -17.02 5.44 -467.09 -2.54 -19.57 16 14 C 0.10 2.56 5.34 86.38 0.46 3.02 16 15 C 0.11 3.14 3.09 30.60 0.09 3.23 16 16 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 17 O -0.56 -16.84 13.03 -148.98 -1.94 -18.78 16 18 C 0.12 4.60 5.90 86.38 0.51 5.11 16 19 N -0.74 -37.02 5.55 -343.45 -1.91 -38.93 16 20 C -0.25 -13.77 9.99 84.04 0.84 -12.93 16 21 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 22 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 23 N -0.97 -59.39 13.06 21.65 0.28 -59.10 16 24 Si 0.98 46.01 29.55 68.60 2.03 48.04 16 25 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 2.11 6.02 -2.39 -0.01 2.10 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.06 0.54 7.92 -2.39 -0.02 0.53 16 35 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.06 0.54 7.92 -2.39 -0.02 0.52 16 37 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.09 0.50 8.14 -2.38 -0.02 0.49 16 39 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.41 8.90 7.53 -92.71 -0.70 8.20 16 41 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.39 9.37 9.05 -74.06 -0.67 8.70 16 44 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.38 20.40 7.67 -92.71 -0.71 19.69 16 47 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -71.32 401.36 -1.86 -73.18 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: -1.08 Total: 37.39 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 6.39 Total: 5.62 kcal Atomic # 7 Polarization: -124.15 SS G_CDS: -6.03 Total: -130.18 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -2.00 Total: -36.49 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.17 Total: 2.44 kcal Total: -71.32 -1.86 -73.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272593318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.432 kcal (2) G-P(sol) polarization free energy of solvation -71.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds