Wall clock time and date at job start Sat Apr 11 2020 06:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34330 * 126.44300 * 2 1 4 4 N 1.34485 * 107.66981 * 179.76475 * 3 2 1 5 5 C 1.30251 * 108.69711 * 0.41913 * 4 3 2 6 6 C 1.50703 * 125.61767 * 179.83988 * 5 4 3 7 7 N 1.46899 * 109.47107 * 89.69203 * 6 5 4 8 8 C 1.46902 * 111.00255 * 293.95458 * 7 6 5 9 9 C 1.46901 * 111.00103 * 169.99758 * 7 6 5 10 10 C 1.52995 * 109.47356 * 189.99936 * 9 7 6 11 11 C 1.52999 * 109.47409 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47329 * 180.02562 * 11 10 9 13 13 C 1.46506 * 120.00322 * 89.99846 * 12 11 10 14 14 C 1.34777 * 119.99871 * 269.99892 * 12 11 10 15 15 O 1.21276 * 120.00183 * 0.02562 * 14 12 11 16 16 C 1.50701 * 119.99746 * 179.97438 * 14 12 11 17 17 S 1.81004 * 109.47088 * 180.02562 * 16 14 12 18 18 C 1.76195 * 100.00356 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00007 * 0.02562 * 18 17 16 20 20 C 1.38801 * 120.00199 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99809 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99999 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47120 * 59.99944 * 22 20 18 24 24 H 1.48500 * 109.47458 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47316 * 300.00409 * 22 20 18 26 26 O 1.33972 * 108.76183 * 359.57692 * 5 4 3 27 27 H 1.08997 * 109.47295 * 269.97906 * 1 2 3 28 28 H 1.09001 * 109.47136 * 29.98596 * 1 2 3 29 29 H 1.09005 * 109.47082 * 149.97616 * 1 2 3 30 30 H 1.08001 * 126.16650 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47152 * 329.69290 * 6 5 4 32 32 H 1.09001 * 109.46980 * 209.69391 * 6 5 4 33 33 H 1.09005 * 109.46528 * 59.99744 * 8 7 6 34 34 H 1.09000 * 109.46785 * 179.97438 * 8 7 6 35 35 H 1.08997 * 109.47044 * 300.00388 * 8 7 6 36 36 H 1.08998 * 109.47407 * 310.00536 * 9 7 6 37 37 H 1.09007 * 109.46608 * 69.99971 * 9 7 6 38 38 H 1.08998 * 109.47352 * 300.00633 * 10 9 7 39 39 H 1.09008 * 109.46769 * 60.00179 * 10 9 7 40 40 H 1.09002 * 109.46999 * 299.99979 * 11 10 9 41 41 H 1.08997 * 109.46893 * 59.99931 * 11 10 9 42 42 H 1.09002 * 109.46968 * 89.99476 * 13 12 11 43 43 H 1.08998 * 109.47148 * 210.00284 * 13 12 11 44 44 H 1.08998 * 109.46668 * 330.00663 * 13 12 11 45 45 H 1.08999 * 109.47393 * 299.99815 * 16 14 12 46 46 H 1.08998 * 109.47561 * 60.00663 * 16 14 12 47 47 H 0.97003 * 119.99588 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0053 5 6 3.5765 -0.6547 -0.0006 6 6 4.8004 -1.5339 -0.0010 7 7 5.1985 -1.8198 1.3838 8 6 5.6461 -0.5981 2.0658 9 6 6.2362 -2.8586 1.4296 10 6 6.4464 -3.3061 2.8774 11 6 7.5276 -4.3875 2.9251 12 7 7.7285 -4.8165 4.3114 13 6 6.9410 -5.9252 4.8566 14 6 8.6376 -4.1912 5.0853 15 8 9.2891 -3.2731 4.6342 16 6 8.8437 -4.6321 6.5115 17 16 10.1202 -3.6057 7.2819 18 6 10.1546 -4.3179 8.8931 19 1 9.4989 -5.1418 9.1334 20 6 11.0252 -3.8210 9.8531 21 7 11.8247 -2.8172 9.5601 22 14 11.0621 -4.5766 11.5610 23 1 11.4230 -6.0135 11.4589 24 1 12.0703 -3.8715 12.3927 25 1 9.7228 -4.4462 12.1892 26 8 2.3074 -1.0839 -0.0003 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.9821 2.1113 0.0004 31 1 5.6146 -1.0230 -0.5150 32 1 4.5761 -2.4686 -0.5150 33 1 4.8341 0.1291 2.0785 34 1 5.9344 -0.8382 3.0892 35 1 6.5012 -0.1787 1.5359 36 1 5.9234 -3.7115 0.8273 37 1 7.1695 -2.4574 1.0341 38 1 6.7593 -2.4532 3.4796 39 1 5.5131 -3.7072 3.2728 40 1 7.2151 -5.2406 2.3229 41 1 8.4607 -3.9861 2.5299 42 1 7.4662 -6.8642 4.6818 43 1 6.8026 -5.7801 5.9280 44 1 5.9685 -5.9561 4.3653 45 1 7.9100 -4.5251 7.0635 46 1 9.1578 -5.6757 6.5275 47 1 12.4333 -2.4702 10.2309 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273488533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:08 Heat of formation + Delta-G solvation = -4.982645 kcal Electronic energy + Delta-G solvation = -26286.716235 eV Core-core repulsion = 22405.031778 eV Total energy + Delta-G solvation = -3881.684457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.62986 -39.52125 -38.15659 -35.56784 -34.98944 -33.32994 -32.41793 -32.24100 -29.62241 -28.77078 -27.30868 -26.56272 -25.58790 -25.22039 -23.31899 -22.45630 -21.24833 -20.99469 -19.16642 -17.65954 -17.32007 -17.21719 -16.63504 -16.14225 -15.81340 -15.66215 -15.16231 -15.05342 -14.80340 -14.78865 -14.21057 -13.93989 -13.77319 -13.51787 -13.24907 -13.16183 -12.97004 -12.79321 -12.60967 -12.47209 -12.42924 -12.16961 -12.09759 -11.87941 -11.64456 -11.53164 -11.48703 -11.03341 -11.03067 -10.82636 -10.77335 -10.65529 -9.80398 -9.34620 -9.07594 -9.04866 -8.73129 -8.51230 -8.21719 -6.48908 -6.20407 -3.90999 1.08146 2.24485 2.36780 2.95459 3.07356 3.24104 3.26557 3.29829 3.50661 3.64968 3.85541 4.21567 4.36225 4.56820 4.64594 4.70090 4.82649 4.88010 4.94028 4.98477 5.05265 5.14245 5.15464 5.16504 5.17398 5.26256 5.34652 5.39996 5.43019 5.51898 5.54024 5.59641 5.64933 5.70779 5.73400 5.84165 5.91981 5.97342 6.04521 6.15041 6.17209 6.58595 6.62629 6.71172 7.42874 7.55095 7.60404 8.36022 8.58059 9.24662 10.86952 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018943 B = 0.001708 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.762731 B =16394.110940 C =16818.301379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.049 4.049 3 C -0.044 4.044 4 N -0.477 5.477 5 C 0.201 3.799 6 C 0.149 3.851 7 N -0.540 5.540 8 C 0.018 3.982 9 C 0.061 3.939 10 C -0.133 4.133 11 C 0.120 3.880 12 N -0.625 5.625 13 C 0.081 3.919 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.150 4.150 17 S -0.062 6.062 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 O -0.194 6.194 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.182 0.818 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.016 -0.413 -21.645 30.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C -0.183 4.183 4 N -0.207 5.207 5 C -0.006 4.006 6 C 0.020 3.980 7 N -0.265 5.265 8 C -0.129 4.129 9 C -0.067 4.067 10 C -0.172 4.172 11 C -0.004 4.004 12 N -0.361 5.361 13 C -0.063 4.063 14 C 0.320 3.680 15 O -0.390 6.390 16 C -0.301 4.301 17 S 0.165 5.835 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 O -0.080 6.080 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.199 0.801 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.053 0.947 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.765 1.197 -21.995 30.272 hybrid contribution -0.821 -1.557 1.295 2.185 sum -21.586 -0.360 -20.700 29.909 Atomic orbital electron populations 1.20273 0.83999 1.04298 1.03918 1.23502 0.95118 0.84668 1.06973 1.23078 0.87797 1.00366 1.07082 1.70458 1.23171 1.09219 1.17805 1.25986 0.84182 0.89965 1.00449 1.20377 0.88665 0.97264 0.91681 1.61923 1.40914 1.10430 1.13244 1.22533 0.99798 0.90949 0.99663 1.22061 0.92607 0.94071 0.97959 1.21978 0.99531 0.99813 0.95850 1.21295 0.99506 0.96990 0.82579 1.47849 1.40235 1.35502 1.12492 1.21761 0.95260 0.89011 1.00228 1.20347 0.78394 0.81804 0.87422 1.90687 1.45998 1.28291 1.74016 1.23560 1.06168 1.05545 0.94828 1.85384 1.44422 1.43745 1.09974 1.22821 1.26659 1.21602 0.97314 0.91005 1.24988 0.94595 0.94895 0.99079 1.70012 1.21731 1.23681 1.34850 0.86230 0.78047 0.79167 0.82088 1.19944 1.20811 1.19944 1.84396 1.17781 1.36449 1.69410 0.89687 0.89004 0.90350 0.80056 0.90123 0.87860 0.91092 0.90394 0.94692 0.90354 0.93774 0.90863 0.91016 0.90873 0.89886 0.92756 0.90711 0.91367 0.89283 0.89305 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.43 36.00 0.38 0.08 16 2 C -0.05 -0.42 7.39 -35.69 -0.26 -0.68 16 3 C -0.04 -0.41 11.80 -17.77 -0.21 -0.62 16 4 N -0.48 -5.50 10.53 -11.10 -0.12 -5.62 16 5 C 0.20 2.14 6.99 -12.95 -0.09 2.05 16 6 C 0.15 1.26 5.59 -4.98 -0.03 1.23 16 7 N -0.54 -5.33 4.75 -244.37 -1.16 -6.49 16 8 C 0.02 0.20 9.16 60.07 0.55 0.75 16 9 C 0.06 0.53 4.96 -3.83 -0.02 0.51 16 10 C -0.13 -1.43 5.47 -26.73 -0.15 -1.58 16 11 C 0.12 1.36 5.41 -4.05 -0.02 1.34 16 12 N -0.62 -8.69 2.87 -181.57 -0.52 -9.21 16 13 C 0.08 0.83 10.24 59.85 0.61 1.44 16 14 C 0.53 10.13 7.69 -10.98 -0.08 10.05 16 15 O -0.52 -11.73 15.44 5.56 0.09 -11.64 16 16 C -0.15 -3.08 4.71 36.01 0.17 -2.91 16 17 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16 18 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 22 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 26 O -0.19 -2.06 10.78 5.37 0.06 -2.00 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.08 0.63 8.12 -51.93 -0.42 0.20 16 32 H 0.10 0.64 7.93 -51.93 -0.41 0.23 16 33 H 0.07 0.85 6.71 -51.93 -0.35 0.51 16 34 H 0.08 0.93 6.30 -51.93 -0.33 0.60 16 35 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.52 7.93 -51.93 -0.41 0.11 16 37 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 38 H 0.07 1.00 6.47 -51.93 -0.34 0.67 16 39 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 40 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 41 H 0.08 1.09 7.42 -51.93 -0.39 0.70 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.80 6.44 -51.93 -0.33 0.46 16 44 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 45 H 0.09 1.69 7.40 -51.92 -0.38 1.31 16 46 H 0.09 1.69 8.11 -51.92 -0.42 1.27 16 47 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 404.00 15.07 6.09 6.09 Total: -1.00 -36.67 404.00 -8.57 -45.24 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.55 Total: -2.01 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 1.04 Total: -1.35 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -1.07 Total: -46.86 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.14 Total: -13.64 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.67 -8.57 -45.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273488533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.256 kcal (2) G-P(sol) polarization free energy of solvation -36.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds