Wall clock time and date at job start Sat Apr 11 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34330 * 126.44300 * 2 1 4 4 N 1.34485 * 107.66981 * 179.76475 * 3 2 1 5 5 C 1.30251 * 108.69711 * 0.41913 * 4 3 2 6 6 C 1.50703 * 125.61767 * 179.83988 * 5 4 3 7 7 N 1.46899 * 109.47107 * 89.69203 * 6 5 4 8 8 C 1.46902 * 111.00255 * 293.95458 * 7 6 5 9 9 C 1.46901 * 111.00103 * 169.99758 * 7 6 5 10 10 C 1.52995 * 109.47356 * 189.99936 * 9 7 6 11 11 C 1.52999 * 109.47409 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47329 * 180.02562 * 11 10 9 13 13 C 1.46506 * 120.00322 * 89.99846 * 12 11 10 14 14 C 1.34777 * 119.99871 * 269.99892 * 12 11 10 15 15 O 1.21276 * 120.00183 * 0.02562 * 14 12 11 16 16 C 1.50701 * 119.99746 * 179.97438 * 14 12 11 17 17 S 1.81004 * 109.47088 * 180.02562 * 16 14 12 18 18 C 1.76195 * 100.00356 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00007 * 0.02562 * 18 17 16 20 20 C 1.38801 * 120.00199 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99809 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99999 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47120 * 59.99944 * 22 20 18 24 24 H 1.48500 * 109.47458 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47316 * 300.00409 * 22 20 18 26 26 O 1.33972 * 108.76183 * 359.57692 * 5 4 3 27 27 H 1.08997 * 109.47295 * 269.97906 * 1 2 3 28 28 H 1.09001 * 109.47136 * 29.98596 * 1 2 3 29 29 H 1.09005 * 109.47082 * 149.97616 * 1 2 3 30 30 H 1.08001 * 126.16650 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47152 * 329.69290 * 6 5 4 32 32 H 1.09001 * 109.46980 * 209.69391 * 6 5 4 33 33 H 1.09005 * 109.46528 * 59.99744 * 8 7 6 34 34 H 1.09000 * 109.46785 * 179.97438 * 8 7 6 35 35 H 1.08997 * 109.47044 * 300.00388 * 8 7 6 36 36 H 1.08998 * 109.47407 * 310.00536 * 9 7 6 37 37 H 1.09007 * 109.46608 * 69.99971 * 9 7 6 38 38 H 1.08998 * 109.47352 * 300.00633 * 10 9 7 39 39 H 1.09008 * 109.46769 * 60.00179 * 10 9 7 40 40 H 1.09002 * 109.46999 * 299.99979 * 11 10 9 41 41 H 1.08997 * 109.46893 * 59.99931 * 11 10 9 42 42 H 1.09002 * 109.46968 * 89.99476 * 13 12 11 43 43 H 1.08998 * 109.47148 * 210.00284 * 13 12 11 44 44 H 1.08998 * 109.46668 * 330.00663 * 13 12 11 45 45 H 1.08999 * 109.47393 * 299.99815 * 16 14 12 46 46 H 1.08998 * 109.47561 * 60.00663 * 16 14 12 47 47 H 0.97003 * 119.99588 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0053 5 6 3.5765 -0.6547 -0.0006 6 6 4.8004 -1.5339 -0.0010 7 7 5.1985 -1.8198 1.3838 8 6 5.6461 -0.5981 2.0658 9 6 6.2362 -2.8586 1.4296 10 6 6.4464 -3.3061 2.8774 11 6 7.5276 -4.3875 2.9251 12 7 7.7285 -4.8165 4.3114 13 6 6.9410 -5.9252 4.8566 14 6 8.6376 -4.1912 5.0853 15 8 9.2891 -3.2731 4.6342 16 6 8.8437 -4.6321 6.5115 17 16 10.1202 -3.6057 7.2819 18 6 10.1546 -4.3179 8.8931 19 1 9.4989 -5.1418 9.1334 20 6 11.0252 -3.8210 9.8531 21 7 11.8247 -2.8172 9.5601 22 14 11.0621 -4.5766 11.5610 23 1 11.4230 -6.0135 11.4589 24 1 12.0703 -3.8715 12.3927 25 1 9.7228 -4.4462 12.1892 26 8 2.3074 -1.0839 -0.0003 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.9821 2.1113 0.0004 31 1 5.6146 -1.0230 -0.5150 32 1 4.5761 -2.4686 -0.5150 33 1 4.8341 0.1291 2.0785 34 1 5.9344 -0.8382 3.0892 35 1 6.5012 -0.1787 1.5359 36 1 5.9234 -3.7115 0.8273 37 1 7.1695 -2.4574 1.0341 38 1 6.7593 -2.4532 3.4796 39 1 5.5131 -3.7072 3.2728 40 1 7.2151 -5.2406 2.3229 41 1 8.4607 -3.9861 2.5299 42 1 7.4662 -6.8642 4.6818 43 1 6.8026 -5.7801 5.9280 44 1 5.9685 -5.9561 4.3653 45 1 7.9100 -4.5251 7.0635 46 1 9.1578 -5.6757 6.5275 47 1 12.4333 -2.4702 10.2309 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273488533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:07 Heat of formation + Delta-G solvation = -32.440709 kcal Electronic energy + Delta-G solvation = -26287.906906 eV Core-core repulsion = 22405.031778 eV Total energy + Delta-G solvation = -3882.875128 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.33150 -40.85423 -38.98285 -36.79447 -35.74320 -34.58746 -34.07730 -33.03301 -30.83462 -29.69237 -28.21652 -27.69049 -27.36414 -26.15690 -24.23049 -23.16034 -22.03502 -21.74699 -20.60550 -19.51915 -18.10451 -17.97574 -17.94030 -17.23020 -16.88127 -16.83971 -16.56872 -16.26333 -15.95899 -15.66989 -15.44395 -15.07838 -14.55687 -14.45881 -14.35296 -14.26162 -13.89454 -13.82690 -13.55055 -13.28976 -13.23279 -13.21034 -13.16426 -12.99501 -12.87058 -12.75081 -12.63756 -12.58080 -12.38353 -12.28290 -11.75331 -11.55977 -11.53460 -11.13011 -10.86782 -10.27270 -9.75496 -9.66863 -9.47053 -8.67769 -8.34600 -6.13237 0.39644 1.26247 1.43761 1.46066 1.54529 1.57173 1.61127 1.70545 2.16115 2.27980 2.82152 2.99302 3.16043 3.27453 3.72212 3.80533 3.95144 4.04077 4.06163 4.10916 4.21442 4.26532 4.31531 4.38170 4.38563 4.45512 4.48866 4.54744 4.57869 4.67203 4.68344 4.69871 4.72030 4.82608 4.91802 4.96686 5.04772 5.11590 5.18513 5.25500 5.32666 5.40957 5.63808 5.79246 5.90393 6.19186 6.30190 6.72069 7.06240 7.17458 8.74409 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018943 B = 0.001708 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.762731 B =16394.110940 C =16818.301379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.047 4.047 3 C -0.068 4.068 4 N -0.506 5.506 5 C 0.186 3.814 6 C 0.150 3.850 7 N -0.545 5.545 8 C 0.027 3.973 9 C 0.066 3.934 10 C -0.123 4.123 11 C 0.118 3.882 12 N -0.612 5.612 13 C 0.071 3.929 14 C 0.528 3.472 15 O -0.566 6.566 16 C -0.124 4.124 17 S -0.155 6.155 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.262 1.262 26 O -0.207 6.207 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.203 0.797 31 H 0.085 0.915 32 H 0.131 0.869 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.112 0.888 37 H 0.041 0.959 38 H 0.034 0.966 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.624 -3.000 -22.174 33.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.101 4.101 3 C -0.206 4.206 4 N -0.236 5.236 5 C -0.021 4.021 6 C 0.022 3.978 7 N -0.271 5.271 8 C -0.121 4.121 9 C -0.062 4.062 10 C -0.162 4.162 11 C -0.004 4.004 12 N -0.345 5.345 13 C -0.071 4.071 14 C 0.316 3.684 15 O -0.444 6.444 16 C -0.275 4.275 17 S 0.072 5.928 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.185 1.185 24 H -0.204 1.204 25 H -0.186 1.186 26 O -0.094 6.094 27 H 0.113 0.887 28 H 0.133 0.867 29 H 0.105 0.895 30 H 0.219 0.781 31 H 0.103 0.897 32 H 0.149 0.851 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.130 0.870 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.097 0.903 40 H 0.137 0.863 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.428 -1.431 -22.555 32.552 hybrid contribution -0.154 -0.771 1.340 1.554 sum -23.582 -2.202 -21.215 31.797 Atomic orbital electron populations 1.20495 0.81017 1.05854 1.04938 1.24295 0.96689 0.83934 1.05143 1.23525 0.87358 1.01777 1.07898 1.70429 1.24616 1.10063 1.18523 1.26359 0.84798 0.90068 1.00859 1.20522 0.88065 0.98391 0.90836 1.61890 1.41089 1.09806 1.14295 1.22357 0.99096 0.91567 0.99076 1.22066 0.92419 0.94805 0.96885 1.21848 0.99315 0.98227 0.96802 1.21520 0.98838 0.98783 0.81308 1.47878 1.38500 1.35175 1.12951 1.22094 0.96546 0.88110 1.00315 1.20145 0.79313 0.81770 0.87214 1.90671 1.48412 1.30637 1.74707 1.23383 1.03916 1.04565 0.95651 1.85575 1.48406 1.47122 1.11646 1.23166 1.27036 1.21846 0.97428 0.89908 1.26144 0.93865 0.95209 1.03942 1.70186 1.22682 1.25401 1.36502 0.85000 0.78544 0.78542 0.75882 1.18540 1.20392 1.18650 1.84395 1.18022 1.37329 1.69613 0.88746 0.86714 0.89515 0.78060 0.89691 0.85099 0.92325 0.91905 0.95055 0.86950 0.94107 0.94671 0.90268 0.86350 0.91999 0.90874 0.91148 0.87982 0.87658 0.87503 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.43 71.23 0.74 0.31 16 2 C -0.05 -0.76 7.39 24.79 0.18 -0.58 16 3 C -0.07 -1.23 11.80 83.39 0.98 -0.25 16 4 N -0.51 -11.79 10.53 -303.82 -3.20 -14.99 16 5 C 0.19 3.88 6.99 88.34 0.62 4.49 16 6 C 0.15 2.35 5.59 85.56 0.48 2.83 16 7 N -0.55 -10.31 4.75 -927.03 -4.41 -14.72 16 8 C 0.03 0.64 9.16 127.69 1.17 1.81 16 9 C 0.07 1.03 4.96 86.30 0.43 1.46 16 10 C -0.12 -2.51 5.47 30.59 0.17 -2.34 16 11 C 0.12 2.44 5.41 86.38 0.47 2.91 16 12 N -0.61 -15.89 2.87 -846.77 -2.43 -18.32 16 13 C 0.07 1.20 10.24 127.77 1.31 2.51 16 14 C 0.53 20.17 7.69 87.66 0.67 20.85 16 15 O -0.57 -26.83 15.44 -3.02 -0.05 -26.88 16 16 C -0.12 -5.06 4.71 71.24 0.34 -4.73 16 17 S -0.15 -8.77 20.57 -56.49 -1.16 -9.93 16 18 C -0.55 -31.60 9.50 67.95 0.65 -30.96 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.75 5.49 84.86 0.47 1.22 16 21 N -0.91 -56.61 13.22 21.65 0.29 -56.32 16 22 Si 1.00 43.84 29.55 68.60 2.03 45.87 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 26 O -0.21 -4.20 10.78 -3.72 -0.04 -4.24 16 27 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.11 0.21 8.14 -2.39 -0.02 0.20 16 29 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.20 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.09 1.25 8.12 -2.39 -0.02 1.23 16 32 H 0.13 1.28 7.93 -2.39 -0.02 1.26 16 33 H 0.06 1.49 6.71 -2.38 -0.02 1.47 16 34 H 0.06 1.62 6.30 -2.39 -0.02 1.61 16 35 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.11 1.04 7.93 -2.39 -0.02 1.03 16 37 H 0.04 0.68 8.12 -2.38 -0.02 0.66 16 38 H 0.03 0.99 6.47 -2.39 -0.02 0.98 16 39 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.12 1.44 8.07 -2.39 -0.02 1.42 16 41 H 0.06 1.59 7.42 -2.39 -0.02 1.57 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.07 1.29 6.44 -2.39 -0.02 1.27 16 44 H 0.10 1.10 8.07 -2.39 -0.02 1.08 16 45 H 0.11 3.92 7.40 -2.40 -0.02 3.91 16 46 H 0.11 3.94 8.11 -2.40 -0.02 3.92 16 47 H 0.27 15.65 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -84.75 404.00 0.65 -84.10 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.96 Total: 15.88 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 8.67 Total: -0.46 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -9.75 Total: -104.35 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.09 Total: -31.12 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -84.75 0.65 -84.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273488533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.662 kcal (2) G-P(sol) polarization free energy of solvation -84.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds