Wall clock time and date at job start Sat Apr 11 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30255 * 125.61586 * 2 1 4 4 C 1.34479 * 108.69992 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.16781 * 180.02562 * 4 3 2 6 6 C 1.34330 * 107.66748 * 359.97438 * 4 3 2 7 7 C 1.50703 * 126.44381 * 180.02562 * 6 4 3 8 8 N 1.46899 * 109.47107 * 90.00137 * 7 6 4 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.46835 * 325.00273 * 9 8 7 11 11 C 1.52997 * 109.46874 * 85.00270 * 9 8 7 12 12 C 1.53002 * 109.46992 * 205.00108 * 9 8 7 13 13 H 1.08997 * 109.47075 * 300.00145 * 12 9 8 14 14 C 1.52997 * 109.47179 * 60.00348 * 12 9 8 15 15 N 1.46501 * 109.46776 * 180.02562 * 12 9 8 16 16 C 1.34771 * 119.99901 * 154.99801 * 15 12 9 17 17 O 1.21284 * 119.99895 * 0.02562 * 16 15 12 18 18 C 1.50698 * 120.00220 * 180.02562 * 16 15 12 19 19 S 1.81005 * 109.47408 * 180.02562 * 18 16 15 20 20 C 1.76201 * 100.00163 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99732 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00196 * 179.97438 * 20 19 18 23 23 N 1.31626 * 120.00283 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99785 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47440 * 89.99617 * 24 22 20 26 26 H 1.48500 * 109.46955 * 209.99829 * 24 22 20 27 27 H 1.48499 * 109.47134 * 329.99358 * 24 22 20 28 28 O 1.33969 * 125.62147 * 180.28275 * 2 1 3 29 29 H 1.08996 * 109.46833 * 90.02445 * 1 2 3 30 30 H 1.09001 * 109.46722 * 210.02491 * 1 2 3 31 31 H 1.08997 * 109.47308 * 330.02387 * 1 2 3 32 32 H 1.08998 * 109.47420 * 269.99936 * 5 4 3 33 33 H 1.09004 * 109.47381 * 29.99956 * 5 4 3 34 34 H 1.09000 * 109.47207 * 149.99573 * 5 4 3 35 35 H 1.09002 * 109.47152 * 330.00224 * 7 6 4 36 36 H 1.09001 * 109.46980 * 210.00324 * 7 6 4 37 37 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 38 38 H 1.08997 * 109.47489 * 179.97438 * 11 9 8 39 39 H 1.09007 * 109.47004 * 300.00081 * 11 9 8 40 40 H 1.09007 * 109.47280 * 59.99720 * 11 9 8 41 41 H 1.09000 * 109.47272 * 179.97438 * 14 12 9 42 42 H 1.09002 * 109.47224 * 299.99535 * 14 12 9 43 43 H 1.08997 * 109.47283 * 59.99924 * 14 12 9 44 44 H 0.96994 * 120.00336 * 335.00722 * 15 12 9 45 45 H 1.08996 * 109.47324 * 299.99965 * 18 16 15 46 46 H 1.09003 * 109.47069 * 60.00380 * 18 16 15 47 47 H 0.96998 * 120.00055 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7570 1.5727 0.0013 6 6 3.5698 -0.6756 0.0015 7 6 4.7938 -1.5548 0.0029 8 7 5.1905 -1.8396 1.3884 9 6 6.3828 -2.6968 1.4290 10 1 6.3523 -3.4011 0.5977 11 6 7.6383 -1.8297 1.3171 12 6 6.4117 -3.4680 2.7501 13 1 6.4421 -2.7637 3.5814 14 6 5.1561 -4.3351 2.8620 15 7 7.6010 -4.3225 2.7908 16 6 8.1218 -4.6964 3.9762 17 8 7.6056 -4.3259 5.0093 18 6 9.3456 -5.5748 4.0182 19 16 9.7965 -5.8995 5.7408 20 6 11.2141 -6.9178 5.4993 21 1 11.5448 -7.1545 4.4988 22 6 11.9063 -7.4150 6.5948 23 7 12.9649 -8.1761 6.4145 24 14 11.3346 -7.0050 8.3254 25 1 10.3666 -8.0337 8.7837 26 1 12.5037 -6.9828 9.2406 27 1 10.6790 -5.6726 8.3275 28 8 2.2873 -1.0890 -0.0054 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 5.0481 1.7912 -1.0261 33 1 4.5127 2.5025 0.5152 34 1 5.5818 1.0794 0.5155 35 1 5.6085 -1.0443 -0.5107 36 1 4.5700 -2.4899 -0.5105 37 1 5.3410 -0.9856 1.9043 38 1 8.5231 -2.4656 1.3476 39 1 7.6177 -1.2803 0.3758 40 1 7.6688 -1.1253 2.1484 41 1 5.1769 -4.8849 3.8030 42 1 4.2714 -3.6991 2.8319 43 1 5.1257 -5.0395 2.0308 44 1 8.0137 -4.6189 1.9646 45 1 9.1334 -6.5179 3.5147 46 1 10.1713 -5.0719 3.5148 47 1 13.4488 -8.5232 7.1801 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275357304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:15 Heat of formation + Delta-G solvation = -25.876962 kcal Electronic energy + Delta-G solvation = -26633.510549 eV Core-core repulsion = 22750.920047 eV Total energy + Delta-G solvation = -3882.590502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.71242 -39.72312 -37.94899 -35.57622 -35.02591 -33.23215 -32.44327 -31.38379 -30.20539 -29.67057 -28.62418 -27.52537 -25.61593 -24.52785 -23.49718 -22.12115 -21.21480 -20.89047 -20.36791 -17.93417 -17.31469 -17.15531 -16.55576 -16.28861 -15.67191 -15.34812 -15.04296 -14.99472 -14.81291 -14.25201 -13.97661 -13.90240 -13.79648 -13.65375 -13.47859 -13.39347 -13.27159 -13.11384 -12.96542 -12.79536 -12.58740 -12.51381 -12.20619 -11.94565 -11.80158 -11.43670 -11.26435 -11.26280 -11.01100 -10.94182 -10.81655 -10.58756 -9.85924 -9.50154 -9.16960 -9.02129 -8.98814 -8.76656 -8.50022 -6.91856 -6.29333 -4.00959 1.00085 2.20823 2.26598 2.75021 2.99219 3.24036 3.33310 3.50416 3.55046 3.60718 3.94708 4.26267 4.32046 4.33015 4.38332 4.53906 4.66839 4.75262 4.79750 4.83766 4.88795 4.92950 5.05604 5.09843 5.13055 5.20847 5.26849 5.29342 5.30474 5.39495 5.46219 5.51787 5.61647 5.69522 5.76450 5.78587 5.88244 5.95813 6.00791 6.02385 6.30178 6.38989 6.63938 6.80864 7.37042 7.62614 7.93686 8.41007 8.51690 9.16988 10.79871 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029330 B = 0.001751 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.430122 B =15983.369868 C =16271.671656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.193 3.807 3 N -0.484 5.484 4 C -0.006 4.006 5 C -0.073 4.073 6 C -0.043 4.043 7 C 0.146 3.854 8 N -0.675 5.675 9 C 0.080 3.920 10 H 0.086 0.914 11 C -0.186 4.186 12 C 0.155 3.845 13 H 0.087 0.913 14 C -0.153 4.153 15 N -0.732 5.732 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.124 4.124 19 S -0.141 6.141 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 O -0.192 6.192 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.348 0.652 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.397 0.603 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.897 17.217 -18.741 32.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.014 4.014 3 N -0.215 5.215 4 C -0.127 4.127 5 C -0.130 4.130 6 C -0.096 4.096 7 C 0.018 3.982 8 N -0.308 5.308 9 C -0.030 4.030 10 H 0.104 0.896 11 C -0.244 4.244 12 C 0.050 3.950 13 H 0.106 0.894 14 C -0.211 4.211 15 N -0.387 5.387 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.275 4.275 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 O -0.078 6.078 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.168 0.832 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.230 0.770 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.301 17.765 -16.860 33.124 hybrid contribution 1.744 -0.691 -1.142 2.196 sum -20.557 17.074 -18.002 32.221 Atomic orbital electron populations 1.20271 0.81267 1.05285 1.04658 1.26252 0.96455 0.78677 1.00050 1.70359 1.01596 1.30384 1.19134 1.21544 0.93512 0.92115 1.05527 1.20129 0.91693 0.98260 1.02902 1.22918 0.83755 0.94270 1.08700 1.20235 0.88878 0.98017 0.91114 1.60373 1.36329 1.22101 1.11947 1.21784 0.87781 0.95024 0.98460 0.89613 1.22525 0.99178 1.00857 1.01877 1.20725 0.85041 0.92239 0.97002 0.89449 1.22044 0.97586 0.99773 1.01707 1.46000 1.30727 1.53361 1.08591 1.20233 0.84606 0.80128 0.83173 1.90703 1.61319 1.54416 1.32765 1.23283 0.97646 1.01584 1.04977 1.84801 1.37547 1.66670 1.02504 1.22321 1.12314 1.34657 0.97647 0.89419 1.24709 0.93819 0.93499 0.99259 1.69936 1.17722 1.32303 1.31737 0.86736 0.79323 0.81816 0.83988 1.19203 1.19952 1.15926 1.84401 1.16441 1.37445 1.69534 0.88954 0.89178 0.88074 0.90665 0.90315 0.90984 0.91414 0.88858 0.83227 0.91044 0.92561 0.91871 0.92403 0.90710 0.93198 0.76953 0.88558 0.88571 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.01 0.38 0.13 16 2 C 0.19 1.73 8.34 -12.94 -0.11 1.62 16 3 N -0.48 -5.13 11.29 -7.36 -0.08 -5.21 16 4 C -0.01 -0.06 7.11 -82.81 -0.59 -0.65 16 5 C -0.07 -0.45 10.05 36.00 0.36 -0.09 16 6 C -0.04 -0.38 6.90 -35.69 -0.25 -0.63 16 7 C 0.15 0.94 5.64 -4.98 -0.03 0.92 16 8 N -0.68 -4.90 5.47 -107.99 -0.59 -5.49 16 9 C 0.08 0.58 2.22 -67.71 -0.15 0.43 16 10 H 0.09 0.55 7.80 -51.93 -0.40 0.14 16 11 C -0.19 -1.25 9.00 37.16 0.33 -0.92 16 12 C 0.16 1.67 2.34 -67.93 -0.16 1.51 16 13 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 14 C -0.15 -1.73 9.33 37.16 0.35 -1.38 16 15 N -0.73 -8.70 4.38 -53.81 -0.24 -8.94 16 16 C 0.53 9.15 7.81 -10.99 -0.09 9.06 16 17 O -0.52 -10.97 15.52 5.55 0.09 -10.88 16 18 C -0.12 -2.35 6.16 36.00 0.22 -2.13 16 19 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 20 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 21 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.50 13.97 55.49 0.78 -25.72 16 24 Si 0.86 21.78 27.74 -169.99 -4.72 17.07 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.24 -5.98 6.74 56.52 0.38 -5.59 16 28 O -0.19 -1.91 10.78 5.37 0.06 -1.85 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.34 7.79 -51.93 -0.40 -0.06 16 35 H 0.07 0.32 7.09 -51.93 -0.37 -0.05 16 36 H 0.09 0.58 8.05 -51.93 -0.42 0.16 16 37 H 0.35 2.50 8.47 -39.29 -0.33 2.17 16 38 H 0.07 0.53 7.44 -51.93 -0.39 0.14 16 39 H 0.06 0.30 7.45 -51.92 -0.39 -0.09 16 40 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.82 7.60 -51.93 -0.39 0.42 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.40 3.57 8.39 -40.82 -0.34 3.23 16 45 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 46 H 0.10 1.68 8.14 -51.92 -0.42 1.25 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 405.01 15.07 6.10 6.10 Total: -1.00 -36.06 405.01 -7.74 -43.80 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.64 Total: 0.77 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 0.49 Total: -4.09 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -0.13 Total: -45.36 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.14 Total: -12.73 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.07 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.06 -7.74 -43.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275357304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.927 kcal (2) G-P(sol) polarization free energy of solvation -36.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds