Wall clock time and date at job start Sat Apr 11 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30255 * 125.61586 * 2 1 4 4 C 1.34479 * 108.69992 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.16781 * 180.02562 * 4 3 2 6 6 C 1.34330 * 107.66748 * 359.97438 * 4 3 2 7 7 C 1.50703 * 126.44381 * 180.02562 * 6 4 3 8 8 N 1.46899 * 109.47107 * 90.00137 * 7 6 4 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.46835 * 325.00273 * 9 8 7 11 11 C 1.52997 * 109.46874 * 85.00270 * 9 8 7 12 12 C 1.53002 * 109.46992 * 205.00108 * 9 8 7 13 13 H 1.08997 * 109.47075 * 300.00145 * 12 9 8 14 14 C 1.52997 * 109.47179 * 60.00348 * 12 9 8 15 15 N 1.46501 * 109.46776 * 180.02562 * 12 9 8 16 16 C 1.34771 * 119.99901 * 154.99801 * 15 12 9 17 17 O 1.21284 * 119.99895 * 0.02562 * 16 15 12 18 18 C 1.50698 * 120.00220 * 180.02562 * 16 15 12 19 19 S 1.81005 * 109.47408 * 180.02562 * 18 16 15 20 20 C 1.76201 * 100.00163 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99732 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00196 * 179.97438 * 20 19 18 23 23 N 1.31626 * 120.00283 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99785 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47440 * 89.99617 * 24 22 20 26 26 H 1.48500 * 109.46955 * 209.99829 * 24 22 20 27 27 H 1.48499 * 109.47134 * 329.99358 * 24 22 20 28 28 O 1.33969 * 125.62147 * 180.28275 * 2 1 3 29 29 H 1.08996 * 109.46833 * 90.02445 * 1 2 3 30 30 H 1.09001 * 109.46722 * 210.02491 * 1 2 3 31 31 H 1.08997 * 109.47308 * 330.02387 * 1 2 3 32 32 H 1.08998 * 109.47420 * 269.99936 * 5 4 3 33 33 H 1.09004 * 109.47381 * 29.99956 * 5 4 3 34 34 H 1.09000 * 109.47207 * 149.99573 * 5 4 3 35 35 H 1.09002 * 109.47152 * 330.00224 * 7 6 4 36 36 H 1.09001 * 109.46980 * 210.00324 * 7 6 4 37 37 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 38 38 H 1.08997 * 109.47489 * 179.97438 * 11 9 8 39 39 H 1.09007 * 109.47004 * 300.00081 * 11 9 8 40 40 H 1.09007 * 109.47280 * 59.99720 * 11 9 8 41 41 H 1.09000 * 109.47272 * 179.97438 * 14 12 9 42 42 H 1.09002 * 109.47224 * 299.99535 * 14 12 9 43 43 H 1.08997 * 109.47283 * 59.99924 * 14 12 9 44 44 H 0.96994 * 120.00336 * 335.00722 * 15 12 9 45 45 H 1.08996 * 109.47324 * 299.99965 * 18 16 15 46 46 H 1.09003 * 109.47069 * 60.00380 * 18 16 15 47 47 H 0.96998 * 120.00055 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7570 1.5727 0.0013 6 6 3.5698 -0.6756 0.0015 7 6 4.7938 -1.5548 0.0029 8 7 5.1905 -1.8396 1.3884 9 6 6.3828 -2.6968 1.4290 10 1 6.3523 -3.4011 0.5977 11 6 7.6383 -1.8297 1.3171 12 6 6.4117 -3.4680 2.7501 13 1 6.4421 -2.7637 3.5814 14 6 5.1561 -4.3351 2.8620 15 7 7.6010 -4.3225 2.7908 16 6 8.1218 -4.6964 3.9762 17 8 7.6056 -4.3259 5.0093 18 6 9.3456 -5.5748 4.0182 19 16 9.7965 -5.8995 5.7408 20 6 11.2141 -6.9178 5.4993 21 1 11.5448 -7.1545 4.4988 22 6 11.9063 -7.4150 6.5948 23 7 12.9649 -8.1761 6.4145 24 14 11.3346 -7.0050 8.3254 25 1 10.3666 -8.0337 8.7837 26 1 12.5037 -6.9828 9.2406 27 1 10.6790 -5.6726 8.3275 28 8 2.2873 -1.0890 -0.0054 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 5.0481 1.7912 -1.0261 33 1 4.5127 2.5025 0.5152 34 1 5.5818 1.0794 0.5155 35 1 5.6085 -1.0443 -0.5107 36 1 4.5700 -2.4899 -0.5105 37 1 5.3410 -0.9856 1.9043 38 1 8.5231 -2.4656 1.3476 39 1 7.6177 -1.2803 0.3758 40 1 7.6688 -1.1253 2.1484 41 1 5.1769 -4.8849 3.8030 42 1 4.2714 -3.6991 2.8319 43 1 5.1257 -5.0395 2.0308 44 1 8.0137 -4.6189 1.9646 45 1 9.1334 -6.5179 3.5147 46 1 10.1713 -5.0719 3.5148 47 1 13.4488 -8.5232 7.1801 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275357304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:14 Heat of formation + Delta-G solvation = -54.133619 kcal Electronic energy + Delta-G solvation = -26634.735850 eV Core-core repulsion = 22750.920047 eV Total energy + Delta-G solvation = -3883.815803 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.34009 -40.90886 -38.80692 -36.26806 -35.90885 -34.66858 -33.93554 -32.37011 -30.94024 -30.15794 -29.87633 -28.11564 -27.83071 -25.12634 -24.26972 -22.75449 -21.95773 -21.74452 -21.42946 -19.88058 -18.05348 -18.01205 -17.74013 -17.26551 -17.05629 -16.43511 -16.24399 -16.06009 -15.81886 -15.30924 -15.04472 -14.87660 -14.75752 -14.45623 -14.40355 -14.24277 -13.96207 -13.88866 -13.70894 -13.53685 -13.45882 -13.33939 -13.15448 -13.03975 -13.00959 -12.77331 -12.63587 -12.52829 -12.23326 -11.89573 -11.87004 -11.68645 -11.48237 -11.16875 -10.96086 -10.52024 -10.16841 -9.66600 -9.38627 -8.98572 -8.51231 -6.21601 0.38322 0.99933 1.31401 1.46931 1.54865 1.59578 1.61346 1.71653 2.20770 2.25987 2.72214 2.87164 3.07288 3.26053 3.62609 3.72094 3.83904 3.93111 4.00888 4.11389 4.24584 4.25489 4.34192 4.48403 4.49536 4.51707 4.59088 4.61623 4.64652 4.70456 4.79232 4.81553 4.86309 4.90331 4.95912 5.07607 5.10180 5.18208 5.26706 5.37090 5.41916 5.52340 5.71139 5.88097 6.11839 6.24515 6.51998 6.74335 6.94304 7.25273 8.61041 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029330 B = 0.001751 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.430122 B =15983.369868 C =16271.671656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.186 3.814 3 N -0.519 5.519 4 C -0.022 4.022 5 C -0.071 4.071 6 C -0.053 4.053 7 C 0.152 3.848 8 N -0.684 5.684 9 C 0.094 3.906 10 H 0.106 0.894 11 C -0.183 4.183 12 C 0.155 3.845 13 H 0.063 0.937 14 C -0.145 4.145 15 N -0.705 5.705 16 C 0.538 3.462 17 O -0.563 6.563 18 C -0.111 4.111 19 S -0.178 6.178 20 C -0.528 4.528 21 H 0.063 0.937 22 C 0.046 3.954 23 N -0.916 5.916 24 Si 0.913 3.087 25 H -0.263 1.263 26 H -0.259 1.259 27 H -0.237 1.237 28 O -0.208 6.208 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.349 0.651 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.026 0.974 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.416 0.584 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.757 17.978 -20.315 34.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.021 4.021 3 N -0.250 5.250 4 C -0.142 4.142 5 C -0.128 4.128 6 C -0.106 4.106 7 C 0.024 3.976 8 N -0.316 5.316 9 C -0.016 4.016 10 H 0.124 0.876 11 C -0.242 4.242 12 C 0.050 3.950 13 H 0.081 0.919 14 C -0.204 4.204 15 N -0.359 5.359 16 C 0.323 3.677 17 O -0.441 6.441 18 C -0.262 4.262 19 S 0.048 5.952 20 C -0.676 4.676 21 H 0.081 0.919 22 C -0.159 4.159 23 N -0.554 5.554 24 Si 0.735 3.265 25 H -0.188 1.188 26 H -0.183 1.183 27 H -0.161 1.161 28 O -0.095 6.095 29 H 0.128 0.872 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.168 0.832 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.253 0.747 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.158 18.532 -18.496 34.955 hybrid contribution 1.910 -0.882 -0.815 2.256 sum -21.248 17.650 -19.311 33.703 Atomic orbital electron populations 1.20505 0.78618 1.06248 1.06060 1.27138 0.97904 0.78228 0.98837 1.70373 1.02614 1.31409 1.20591 1.22027 0.93866 0.92922 1.05428 1.20213 0.91162 0.97669 1.03746 1.23342 0.84011 0.94589 1.08697 1.20321 0.88489 0.98233 0.90578 1.60271 1.36292 1.22296 1.12778 1.21610 0.88250 0.95160 0.96596 0.87604 1.22508 0.98391 1.00620 1.02674 1.20816 0.83950 0.91704 0.98494 0.91876 1.21959 0.97954 0.99846 1.00595 1.45719 1.30394 1.52063 1.07707 1.19905 0.84006 0.79803 0.83997 1.90696 1.62496 1.56283 1.34624 1.23274 0.99281 1.03191 1.00415 1.84753 1.35990 1.65931 1.08503 1.22466 1.13477 1.34984 0.96661 0.91871 1.25539 0.93965 0.93458 1.02940 1.70011 1.18857 1.33430 1.33136 0.85884 0.79333 0.81434 0.79825 1.18804 1.18349 1.16132 1.84402 1.17159 1.38059 1.69876 0.87208 0.87855 0.87384 0.89574 0.90935 0.89309 0.89144 0.88268 0.83208 0.91445 0.90340 0.92936 0.95526 0.90346 0.91638 0.74713 0.86935 0.86691 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 71.24 0.75 0.32 16 2 C 0.19 3.22 8.34 88.34 0.74 3.95 16 3 N -0.52 -10.79 11.29 -291.98 -3.30 -14.09 16 4 C -0.02 -0.39 7.11 41.26 0.29 -0.10 16 5 C -0.07 -0.78 10.05 71.23 0.72 -0.07 16 6 C -0.05 -0.87 6.90 24.79 0.17 -0.70 16 7 C 0.15 1.54 5.64 85.56 0.48 2.02 16 8 N -0.68 -8.30 5.47 -495.57 -2.71 -11.01 16 9 C 0.09 1.09 2.22 44.91 0.10 1.19 16 10 H 0.11 0.88 7.80 -2.39 -0.02 0.86 16 11 C -0.18 -1.90 9.00 71.98 0.65 -1.25 16 12 C 0.16 3.07 2.34 44.99 0.11 3.18 16 13 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 14 C -0.15 -3.08 9.33 71.98 0.67 -2.41 16 15 N -0.70 -15.21 4.38 -442.54 -1.94 -17.15 16 16 C 0.54 17.80 7.81 87.66 0.68 18.48 16 17 O -0.56 -23.80 15.52 -3.04 -0.05 -23.84 16 18 C -0.11 -4.04 6.16 71.24 0.44 -3.60 16 19 S -0.18 -8.95 18.55 -56.49 -1.05 -10.00 16 20 C -0.53 -30.57 10.04 67.95 0.68 -29.89 16 21 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 22 C 0.05 2.72 5.50 84.86 0.47 3.18 16 23 N -0.92 -55.59 13.97 21.65 0.30 -55.29 16 24 Si 0.91 45.04 27.74 68.60 1.90 46.95 16 25 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 26 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 27 H -0.24 -11.71 6.74 99.48 0.67 -11.04 16 28 O -0.21 -3.96 10.78 -3.72 -0.04 -4.00 16 29 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.09 0.64 7.79 -2.39 -0.02 0.62 16 35 H 0.09 0.52 7.09 -2.39 -0.02 0.50 16 36 H 0.10 0.91 8.05 -2.39 -0.02 0.90 16 37 H 0.35 4.35 8.47 -89.69 -0.76 3.59 16 38 H 0.07 0.77 7.44 -2.39 -0.02 0.75 16 39 H 0.08 0.50 7.45 -2.38 -0.02 0.48 16 40 H 0.05 0.68 8.13 -2.38 -0.02 0.66 16 41 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 1.62 7.60 -2.39 -0.02 1.60 16 43 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.42 6.06 8.39 -92.71 -0.78 5.29 16 45 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 46 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 47 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -80.00 405.01 -0.52 -80.52 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -0.59 Total: 13.59 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 6.95 Total: -5.69 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -7.65 Total: -97.53 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.09 Total: -27.84 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.90 Total: 46.95 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.05 Total: -10.00 kcal Total: -80.00 -0.52 -80.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275357304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.388 kcal (2) G-P(sol) polarization free energy of solvation -80.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds