Wall clock time and date at job start Sat Apr 11 2020 06:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34482 * 126.16352 * 2 1 4 4 C 1.30259 * 108.69955 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.61611 * 179.97438 * 4 3 2 6 6 N 1.46904 * 109.47127 * 90.00516 * 5 4 3 7 7 C 1.46896 * 110.99972 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47099 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47195 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.46742 * 180.02562 * 9 8 7 11 11 C 1.46501 * 120.00137 * 90.00529 * 10 9 8 12 12 C 1.34779 * 120.00072 * 269.99097 * 10 9 8 13 13 O 1.21286 * 119.99550 * 0.02562 * 12 10 9 14 14 C 1.50696 * 120.00333 * 180.02562 * 12 10 9 15 15 S 1.80993 * 109.47203 * 180.02562 * 14 12 10 16 16 C 1.76204 * 99.99982 * 179.97438 * 15 14 12 17 17 H 1.07996 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00071 * 179.97438 * 16 15 14 19 19 N 1.31632 * 119.99708 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00064 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46768 * 60.00293 * 20 18 16 22 22 H 1.48498 * 109.47268 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47292 * 300.00578 * 20 18 16 24 24 O 1.33966 * 108.76366 * 359.73796 * 4 3 2 25 25 C 1.34329 * 126.17137 * 180.02562 * 2 1 3 26 26 C 1.50706 * 126.43925 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.46956 * 269.99765 * 1 2 3 28 28 H 1.08998 * 109.47037 * 30.00089 * 1 2 3 29 29 H 1.09007 * 109.46788 * 149.99569 * 1 2 3 30 30 H 1.09004 * 109.46862 * 210.00042 * 5 4 3 31 31 H 1.08999 * 109.47505 * 330.00155 * 5 4 3 32 32 H 1.00904 * 110.99930 * 303.95262 * 6 5 4 33 33 H 1.08994 * 109.47327 * 299.99950 * 7 6 5 34 34 H 1.09001 * 109.46869 * 59.99969 * 7 6 5 35 35 H 1.09003 * 109.46958 * 300.00341 * 8 7 6 36 36 H 1.08997 * 109.47047 * 59.99866 * 8 7 6 37 37 H 1.09005 * 109.46775 * 299.99764 * 9 8 7 38 38 H 1.08997 * 109.47414 * 59.99868 * 9 8 7 39 39 H 1.08997 * 109.47414 * 89.99304 * 11 10 9 40 40 H 1.09001 * 109.46901 * 209.99475 * 11 10 9 41 41 H 1.09007 * 109.46686 * 329.99152 * 11 10 9 42 42 H 1.08998 * 109.46975 * 300.00557 * 14 12 10 43 43 H 1.08996 * 109.46799 * 60.00260 * 14 12 10 44 44 H 0.97006 * 119.99720 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.46953 * 90.00182 * 26 25 2 46 46 H 1.09000 * 109.47318 * 209.99779 * 26 25 2 47 47 H 1.09000 * 109.47161 * 330.00410 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5431 0.6948 0.0006 5 6 4.7479 1.6001 0.0002 6 7 5.1392 1.8951 1.3851 7 6 6.3135 2.7767 1.4239 8 6 6.6897 3.0613 2.8795 9 6 7.9124 3.9800 2.9199 10 7 8.2729 4.2519 4.3136 11 6 9.2154 3.3737 5.0113 12 6 7.7377 5.3103 4.9540 13 8 6.9573 6.0372 4.3765 14 6 8.1089 5.5904 6.3874 15 16 7.2318 7.0662 6.9604 16 6 7.8336 7.1571 8.6140 17 1 8.5350 6.4192 8.9747 18 6 7.4072 8.1775 9.4527 19 7 6.5528 9.0771 9.0129 20 14 8.0458 8.2742 11.2055 21 1 9.5235 8.4194 11.1865 22 1 7.4415 9.4462 11.8885 23 1 7.6796 7.0336 11.9349 24 8 3.5735 -0.6445 0.0067 25 6 2.2998 -1.0844 -0.0005 26 6 1.8494 -2.5226 -0.0006 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 5.5731 1.1064 -0.5131 31 1 4.5040 2.5295 -0.5143 32 1 4.3695 2.2945 1.9010 33 1 7.1494 2.2909 0.9206 34 1 6.0807 3.7143 0.9192 35 1 5.8536 3.5472 3.3825 36 1 6.9223 2.1238 3.3846 37 1 8.7486 3.4943 2.4168 38 1 7.6794 4.9174 2.4150 39 1 10.2307 3.7429 4.8675 40 1 8.9806 3.3611 6.0756 41 1 9.1358 2.3634 4.6097 42 1 7.8303 4.7387 7.0079 43 1 9.1839 5.7556 6.4586 44 1 6.2545 9.7900 9.5991 45 1 1.7405 -2.8691 -1.0283 46 1 2.5903 -3.1354 0.5128 47 1 0.8916 -2.6034 0.5135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275875746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:21 Heat of formation + Delta-G solvation = -20.812271 kcal Electronic energy + Delta-G solvation = -25750.158834 eV Core-core repulsion = 21867.787953 eV Total energy + Delta-G solvation = -3882.370881 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.65168 -39.49045 -37.23681 -35.50977 -35.45029 -33.65318 -32.41709 -32.16522 -29.70543 -29.31774 -27.91689 -26.58879 -25.51463 -24.84089 -23.67909 -21.97345 -21.75345 -20.89430 -19.15801 -17.66859 -17.20169 -17.14904 -16.64321 -16.02007 -15.99047 -15.53859 -15.18530 -14.80077 -14.76932 -14.61553 -14.02965 -13.93347 -13.71424 -13.66064 -13.47644 -13.21696 -12.97905 -12.83322 -12.75293 -12.60229 -12.46469 -12.34447 -12.25725 -12.09526 -11.70095 -11.61337 -11.24344 -11.03308 -11.03039 -10.83933 -10.80775 -10.73645 -9.80410 -9.35005 -9.04813 -9.02143 -8.80007 -8.52133 -8.21739 -6.48896 -6.20326 -3.90996 1.06619 2.23783 2.33220 2.95305 3.06932 3.24198 3.26652 3.29938 3.51420 3.63367 3.97565 4.21592 4.32392 4.45706 4.61137 4.72452 4.81916 4.87847 4.93083 4.98617 5.00605 5.13382 5.14482 5.15377 5.18284 5.22234 5.27654 5.28432 5.39726 5.40869 5.52747 5.57421 5.63342 5.67211 5.72865 5.75150 5.91508 6.00113 6.01212 6.11125 6.15043 6.49141 6.68625 6.87365 7.43610 7.54533 7.60429 8.36083 8.57572 9.24712 10.87025 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016001 B = 0.001616 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.431267 B =17325.860884 C =18188.459796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.017 4.017 3 N -0.474 5.474 4 C 0.197 3.803 5 C 0.156 3.844 6 N -0.688 5.688 7 C 0.064 3.936 8 C -0.134 4.134 9 C 0.121 3.879 10 N -0.625 5.625 11 C 0.081 3.919 12 C 0.532 3.468 13 O -0.516 6.516 14 C -0.151 4.151 15 S -0.062 6.062 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 O -0.193 6.193 25 C -0.051 4.051 26 C -0.067 4.067 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.352 0.648 33 H 0.077 0.923 34 H 0.040 0.960 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 -23.713 -20.242 31.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.137 4.137 3 N -0.205 5.205 4 C -0.011 4.011 5 C 0.026 3.974 6 N -0.321 5.321 7 C -0.065 4.065 8 C -0.173 4.173 9 C -0.003 4.003 10 N -0.361 5.361 11 C -0.063 4.063 12 C 0.320 3.680 13 O -0.390 6.390 14 C -0.301 4.301 15 S 0.165 5.835 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.200 1.200 24 O -0.079 6.079 25 C -0.104 4.104 26 C -0.124 4.124 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.171 0.829 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.661 -22.433 -20.989 31.072 hybrid contribution 1.198 -0.731 1.634 2.154 sum -3.463 -23.164 -19.354 30.383 Atomic orbital electron populations 1.20118 0.86451 1.03286 1.02982 1.21539 0.97993 0.87652 1.06472 1.70354 1.00538 1.31567 1.18012 1.25952 0.94999 0.79209 1.00914 1.20198 0.90175 0.94869 0.92125 1.60460 1.09912 1.50418 1.11313 1.21898 0.92601 0.94465 0.97514 1.21931 0.99262 1.00383 0.95752 1.21286 0.96343 1.00032 0.82662 1.47854 1.46616 1.28742 1.12893 1.21764 0.92527 0.93795 0.98195 1.20357 0.79914 0.79381 0.88326 1.90691 1.33675 1.47025 1.67604 1.23557 1.05353 1.06544 0.94649 1.85388 1.58304 1.27034 1.12804 1.22822 1.31938 1.16100 0.97540 0.91000 1.24989 0.94793 0.94656 0.99116 1.70013 1.29975 1.13771 1.36513 0.86228 0.79052 0.77794 0.82446 1.19936 1.20809 1.19951 1.84392 1.29966 1.23978 1.69550 1.23227 0.80887 0.98298 1.08032 1.20269 1.02046 0.86388 1.03658 0.90619 0.90527 0.90783 0.88044 0.90462 0.82881 0.90483 0.94153 0.91096 0.90951 0.90816 0.89843 0.92742 0.90694 0.91362 0.89269 0.89290 0.92141 0.89872 0.90211 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.05 36.00 0.36 -0.12 16 2 C -0.02 -0.17 7.11 -82.81 -0.59 -0.76 16 3 N -0.47 -5.77 11.29 -7.36 -0.08 -5.85 16 4 C 0.20 2.14 7.86 -12.94 -0.10 2.04 16 5 C 0.16 1.30 6.31 -4.97 -0.03 1.27 16 6 N -0.69 -6.48 6.49 -115.06 -0.75 -7.22 16 7 C 0.06 0.55 5.69 -3.82 -0.02 0.53 16 8 C -0.13 -1.43 5.80 -26.73 -0.15 -1.58 16 9 C 0.12 1.37 5.41 -4.04 -0.02 1.35 16 10 N -0.63 -8.73 2.87 -181.57 -0.52 -9.25 16 11 C 0.08 0.83 10.24 59.85 0.61 1.45 16 12 C 0.53 10.17 7.69 -10.99 -0.08 10.09 16 13 O -0.52 -11.78 15.44 5.55 0.09 -11.69 16 14 C -0.15 -3.09 4.71 36.00 0.17 -2.92 16 15 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 16 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 17 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 20 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 O -0.19 -2.12 10.78 5.36 0.06 -2.06 16 25 C -0.05 -0.47 7.39 -35.68 -0.26 -0.74 16 26 C -0.07 -0.32 10.04 36.01 0.36 0.04 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.32 7.79 -51.93 -0.40 -0.09 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.35 3.68 8.72 -39.29 -0.34 3.34 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 38 H 0.08 1.09 7.42 -51.93 -0.39 0.71 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 41 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 42 H 0.09 1.70 7.40 -51.92 -0.38 1.32 16 43 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.09 0.29 7.80 -51.93 -0.40 -0.12 16 LS Contribution 410.32 15.07 6.18 6.18 Total: -1.00 -36.96 410.32 -8.80 -45.76 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.71 Total: -0.45 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 0.44 Total: -2.39 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.62 Total: -47.89 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.14 Total: -13.76 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.96 -8.80 -45.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275875746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.947 kcal (2) G-P(sol) polarization free energy of solvation -36.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds