Wall clock time and date at job start Sat Apr 11 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 110.35391 * 2 1 4 4 C 1.53988 * 110.30800 * 237.85375 * 2 1 3 5 5 N 1.47909 * 107.06036 * 242.30896 * 4 2 1 6 6 C 1.46895 * 110.99795 * 214.15976 * 5 4 2 7 7 H 1.09004 * 110.43914 * 54.73269 * 6 5 4 8 8 C 1.54638 * 110.48317 * 177.27098 * 6 5 4 9 9 C 1.54478 * 101.76323 * 93.88061 * 8 6 5 10 10 N 1.46763 * 105.47377 * 25.41351 * 9 8 6 11 11 C 1.34418 * 111.30425 * 342.98801 * 10 9 8 12 12 O 1.21275 * 124.94120 * 180.45086 * 11 10 9 13 13 C 1.48531 * 105.81909 * 334.67472 * 5 4 2 14 14 C 1.54593 * 110.30370 * 122.13933 * 2 1 3 15 15 H 1.09004 * 110.87924 * 22.44999 * 14 2 1 16 16 N 1.46504 * 110.72779 * 259.23296 * 14 2 1 17 17 C 1.34771 * 119.99917 * 160.04862 * 16 14 2 18 18 O 1.21281 * 120.00398 * 0.02562 * 17 16 14 19 19 C 1.50702 * 119.99698 * 179.97438 * 17 16 14 20 20 S 1.81002 * 109.47279 * 179.97438 * 19 17 16 21 21 C 1.76203 * 99.99786 * 180.02562 * 20 19 17 22 22 H 1.07991 * 120.00453 * 359.72125 * 21 20 19 23 23 C 1.38805 * 119.99580 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00030 * 359.71792 * 23 21 20 25 25 Si 1.86798 * 119.99665 * 179.72429 * 23 21 20 26 26 H 1.48498 * 109.47416 * 59.99575 * 25 23 21 27 27 H 1.48508 * 109.46609 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46903 * 299.99161 * 25 23 21 29 29 H 1.08998 * 109.47379 * 297.85746 * 1 2 3 30 30 H 1.09007 * 109.46873 * 57.86000 * 1 2 3 31 31 H 1.09004 * 109.47465 * 177.85612 * 1 2 3 32 32 H 1.08998 * 109.47301 * 182.13827 * 3 2 1 33 33 H 1.09003 * 109.47053 * 302.14412 * 3 2 1 34 34 H 1.09007 * 109.46982 * 62.13899 * 3 2 1 35 35 H 1.09005 * 109.91087 * 122.96118 * 4 2 1 36 36 H 1.08996 * 110.08766 * 1.75929 * 4 2 1 37 37 H 1.08995 * 110.96779 * 211.99928 * 8 6 5 38 38 H 1.08998 * 110.96744 * 335.72656 * 8 6 5 39 39 H 1.08995 * 110.24409 * 144.41854 * 9 8 6 40 40 H 1.09000 * 110.24563 * 266.41777 * 9 8 6 41 41 H 0.97005 * 124.34501 * 162.98376 * 10 9 8 42 42 H 1.09001 * 110.66558 * 280.77298 * 13 5 4 43 43 H 1.09000 * 110.66871 * 157.64060 * 13 5 4 44 44 H 0.97002 * 119.99546 * 340.04527 * 16 14 2 45 45 H 1.09002 * 109.47315 * 59.99436 * 19 17 16 46 46 H 1.09004 * 109.46949 * 300.00089 * 19 17 16 47 47 H 0.97000 * 119.99668 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0622 1.4344 0.0000 4 6 2.0645 -0.7684 -1.2228 5 7 2.8313 -1.9237 -0.7080 6 6 3.9751 -2.2263 -1.5787 7 1 4.5978 -1.3414 -1.7104 8 6 4.8071 -3.3912 -0.9938 9 6 4.1964 -4.6101 -1.7203 10 7 3.6390 -4.0817 -2.9709 11 6 3.4989 -2.7460 -2.9172 12 8 3.0544 -2.0577 -3.8113 13 6 3.2855 -1.5349 0.6516 14 6 2.0665 -0.7713 1.2277 15 1 1.3185 -1.4682 1.6059 16 7 2.4865 0.1571 2.2804 17 6 2.6007 -0.2735 3.5523 18 8 2.3563 -1.4296 3.8255 19 6 3.0333 0.6813 4.6350 20 16 3.0901 -0.1899 6.2205 21 6 3.6080 1.1246 7.2735 22 1 3.7898 2.1064 6.8621 23 6 3.7885 0.8965 8.6307 24 7 3.5673 -0.3003 9.1321 25 14 4.3450 2.2881 9.7457 26 1 3.3507 3.3900 9.6961 27 1 4.4612 1.7891 11.1396 28 1 5.6650 2.7914 9.2879 29 1 -0.3634 0.4802 0.9085 30 1 -0.3633 0.5467 -0.8702 31 1 -0.3634 -1.0270 -0.0384 32 1 3.1514 1.4179 -0.0383 33 1 1.6759 1.9652 -0.8702 34 1 1.7382 1.9421 0.9086 35 1 2.7163 -0.1226 -1.8112 36 1 1.2348 -1.1176 -1.8374 37 1 5.8628 -3.2788 -1.2404 38 1 4.6664 -3.4682 0.0843 39 1 4.9695 -5.3481 -1.9339 40 1 3.4072 -5.0543 -1.1136 41 1 3.4022 -4.6266 -3.7378 42 1 4.1563 -0.8818 0.5942 43 1 3.5046 -2.4183 1.2514 44 1 2.6823 1.0816 2.0618 45 1 2.3221 1.5049 4.6986 46 1 4.0229 1.0732 4.3997 47 1 3.6931 -0.4596 10.0806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282787305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:43 Heat of formation + Delta-G solvation = -59.685128 kcal Electronic energy + Delta-G solvation = -27981.436523 eV Core-core repulsion = 24097.379988 eV Total energy + Delta-G solvation = -3884.056535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.17415 -39.93942 -38.32009 -36.71903 -34.81512 -33.29624 -32.44114 -30.74319 -29.94072 -28.29948 -27.64433 -26.97550 -25.51613 -24.99863 -22.78330 -21.52009 -20.41446 -20.20889 -19.29319 -17.89281 -17.70251 -17.20830 -16.50673 -16.14303 -15.53995 -15.21241 -14.85919 -14.81858 -14.73579 -14.24577 -14.14812 -13.94978 -13.91000 -13.79816 -13.41271 -13.21337 -12.94423 -12.82790 -12.57693 -12.34454 -12.21844 -12.02707 -11.91423 -11.76546 -11.52444 -11.12628 -11.05552 -11.04929 -10.94244 -10.79765 -10.71399 -10.11330 -9.83671 -9.45289 -9.42541 -9.07740 -8.93295 -8.78896 -8.25796 -6.51455 -6.23036 -3.93622 2.16376 2.95332 3.02663 3.06441 3.22276 3.26124 3.28970 3.57933 3.80032 3.92056 4.10916 4.19201 4.25278 4.36364 4.52834 4.58039 4.80272 4.93744 5.02507 5.03530 5.09211 5.12137 5.15608 5.18556 5.34328 5.36216 5.43126 5.48530 5.55762 5.57887 5.64043 5.64948 5.77526 5.85398 5.87316 5.91479 5.96397 6.09425 6.11688 6.32111 6.48555 6.55959 6.65420 6.68619 7.57866 7.67910 7.91433 8.33558 8.58980 9.22261 10.84284 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.002326 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.708435 B =12035.276180 C =12844.703407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 C -0.148 4.148 4 C 0.048 3.952 5 N -0.495 5.495 6 C 0.041 3.959 7 H 0.078 0.922 8 C -0.134 4.134 9 C 0.107 3.893 10 N -0.726 5.726 11 C 0.534 3.466 12 O -0.533 6.533 13 C 0.026 3.974 14 C 0.156 3.844 15 H 0.104 0.896 16 N -0.733 5.733 17 C 0.532 3.468 18 O -0.514 6.514 19 C -0.154 4.154 20 S -0.058 6.058 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.410 0.590 42 H 0.053 0.947 43 H 0.095 0.905 44 H 0.399 0.601 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.442 -3.198 -24.241 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.083 4.083 3 C -0.206 4.206 4 C -0.080 4.080 5 N -0.221 5.221 6 C -0.072 4.072 7 H 0.096 0.904 8 C -0.171 4.171 9 C -0.017 4.017 10 N -0.381 5.381 11 C 0.319 3.681 12 O -0.408 6.408 13 C -0.103 4.103 14 C 0.049 3.951 15 H 0.122 0.878 16 N -0.390 5.390 17 C 0.318 3.682 18 O -0.388 6.388 19 C -0.305 4.305 20 S 0.169 5.831 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.249 0.751 42 H 0.071 0.929 43 H 0.114 0.886 44 H 0.237 0.763 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.482 -5.285 -23.976 24.557 hybrid contribution 1.261 3.076 -0.065 3.325 sum 0.779 -2.209 -24.041 24.155 Atomic orbital electron populations 1.21852 0.92918 1.02504 1.02087 1.21640 0.97004 0.95444 0.94164 1.21934 1.00980 0.95060 1.02614 1.23028 0.98400 0.90654 0.95877 1.64718 1.18726 1.37023 1.01674 1.22543 0.93134 0.99167 0.92320 0.90406 1.22787 0.99030 0.92895 1.02435 1.22040 0.98379 0.96477 0.84836 1.46127 1.65767 1.08205 1.18021 1.20564 0.76679 0.82601 0.88277 1.90745 1.45701 1.61364 1.42993 1.23709 0.97305 1.00289 0.88999 1.21751 0.95773 0.91085 0.86463 0.87760 1.46254 1.71612 1.13875 1.07225 1.20345 0.76347 0.88936 0.82546 1.90703 1.47710 1.18551 1.81816 1.23539 1.03919 1.02204 1.00822 1.85384 1.89070 1.15377 0.93317 1.22827 1.53104 0.97480 0.95061 0.91009 1.24989 0.94956 0.96445 0.97165 1.70006 1.45767 1.20650 1.13856 0.86233 0.79186 0.81138 0.78994 1.19940 1.20806 1.19952 0.92082 0.92330 0.91884 0.92306 0.91637 0.91550 0.92678 0.89691 0.89536 0.87983 0.90276 0.90269 0.75144 0.92913 0.88650 0.76312 0.89283 0.89311 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.23 37.16 0.31 -0.91 16 2 C -0.08 -0.75 0.95 -153.16 -0.15 -0.90 16 3 C -0.15 -1.16 7.10 37.15 0.26 -0.90 16 4 C 0.05 0.48 5.20 -2.75 -0.01 0.46 16 5 N -0.50 -4.89 5.12 -222.50 -1.14 -6.03 16 6 C 0.04 0.36 2.35 -67.72 -0.16 0.20 16 7 H 0.08 0.69 7.98 -51.93 -0.41 0.27 16 8 C -0.13 -0.86 6.66 -25.09 -0.17 -1.03 16 9 C 0.11 0.60 7.78 -3.12 -0.02 0.58 16 10 N -0.73 -5.37 6.24 -59.21 -0.37 -5.74 16 11 C 0.53 5.59 7.62 -10.86 -0.08 5.51 16 12 O -0.53 -7.49 17.64 5.56 0.10 -7.39 16 13 C 0.03 0.27 5.33 -1.89 -0.01 0.26 16 14 C 0.16 1.80 2.76 -66.06 -0.18 1.62 16 15 H 0.10 1.44 7.42 -51.93 -0.39 1.06 16 16 N -0.73 -9.26 4.99 -52.00 -0.26 -9.52 16 17 C 0.53 9.40 7.84 -10.99 -0.09 9.32 16 18 O -0.51 -11.05 15.59 5.56 0.09 -10.96 16 19 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 20 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 21 C -0.54 -15.05 9.50 30.94 0.29 -14.75 16 22 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 25 Si 0.92 21.15 29.55 -169.99 -5.02 16.13 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.51 6.70 -51.93 -0.35 0.16 16 35 H 0.05 0.56 7.21 -51.93 -0.37 0.18 16 36 H 0.08 0.92 7.69 -51.93 -0.40 0.52 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.71 6.25 -51.93 -0.32 0.38 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.41 2.39 8.96 -40.82 -0.37 2.03 16 42 H 0.05 0.54 8.02 -51.93 -0.42 0.12 16 43 H 0.10 1.12 7.10 -51.93 -0.37 0.75 16 44 H 0.40 4.10 5.79 -40.82 -0.24 3.86 16 45 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 46 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 47 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 387.84 15.07 5.84 5.84 Total: -1.00 -35.25 387.84 -9.53 -44.77 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.40 Total: 3.12 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 0.12 Total: -1.34 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: -1.03 Total: -46.42 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.18 Total: -18.35 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.25 -9.53 -44.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282787305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.911 kcal (2) G-P(sol) polarization free energy of solvation -35.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds