Wall clock time and date at job start Sat Apr 11 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 110.35391 * 2 1 4 4 C 1.53988 * 110.30800 * 237.85375 * 2 1 3 5 5 N 1.47909 * 107.06036 * 242.30896 * 4 2 1 6 6 C 1.46895 * 110.99795 * 214.15976 * 5 4 2 7 7 H 1.09004 * 110.43914 * 54.73269 * 6 5 4 8 8 C 1.54638 * 110.48317 * 177.27098 * 6 5 4 9 9 C 1.54478 * 101.76323 * 93.88061 * 8 6 5 10 10 N 1.46763 * 105.47377 * 25.41351 * 9 8 6 11 11 C 1.34418 * 111.30425 * 342.98801 * 10 9 8 12 12 O 1.21275 * 124.94120 * 180.45086 * 11 10 9 13 13 C 1.48531 * 105.81909 * 334.67472 * 5 4 2 14 14 C 1.54593 * 110.30370 * 122.13933 * 2 1 3 15 15 H 1.09004 * 110.87924 * 22.44999 * 14 2 1 16 16 N 1.46504 * 110.72779 * 259.23296 * 14 2 1 17 17 C 1.34771 * 119.99917 * 160.04862 * 16 14 2 18 18 O 1.21281 * 120.00398 * 0.02562 * 17 16 14 19 19 C 1.50702 * 119.99698 * 179.97438 * 17 16 14 20 20 S 1.81002 * 109.47279 * 179.97438 * 19 17 16 21 21 C 1.76203 * 99.99786 * 180.02562 * 20 19 17 22 22 H 1.07991 * 120.00453 * 359.72125 * 21 20 19 23 23 C 1.38805 * 119.99580 * 180.02562 * 21 20 19 24 24 N 1.31633 * 120.00030 * 359.71792 * 23 21 20 25 25 Si 1.86798 * 119.99665 * 179.72429 * 23 21 20 26 26 H 1.48498 * 109.47416 * 59.99575 * 25 23 21 27 27 H 1.48508 * 109.46609 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46903 * 299.99161 * 25 23 21 29 29 H 1.08998 * 109.47379 * 297.85746 * 1 2 3 30 30 H 1.09007 * 109.46873 * 57.86000 * 1 2 3 31 31 H 1.09004 * 109.47465 * 177.85612 * 1 2 3 32 32 H 1.08998 * 109.47301 * 182.13827 * 3 2 1 33 33 H 1.09003 * 109.47053 * 302.14412 * 3 2 1 34 34 H 1.09007 * 109.46982 * 62.13899 * 3 2 1 35 35 H 1.09005 * 109.91087 * 122.96118 * 4 2 1 36 36 H 1.08996 * 110.08766 * 1.75929 * 4 2 1 37 37 H 1.08995 * 110.96779 * 211.99928 * 8 6 5 38 38 H 1.08998 * 110.96744 * 335.72656 * 8 6 5 39 39 H 1.08995 * 110.24409 * 144.41854 * 9 8 6 40 40 H 1.09000 * 110.24563 * 266.41777 * 9 8 6 41 41 H 0.97005 * 124.34501 * 162.98376 * 10 9 8 42 42 H 1.09001 * 110.66558 * 280.77298 * 13 5 4 43 43 H 1.09000 * 110.66871 * 157.64060 * 13 5 4 44 44 H 0.97002 * 119.99546 * 340.04527 * 16 14 2 45 45 H 1.09002 * 109.47315 * 59.99436 * 19 17 16 46 46 H 1.09004 * 109.46949 * 300.00089 * 19 17 16 47 47 H 0.97000 * 119.99668 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0622 1.4344 0.0000 4 6 2.0645 -0.7684 -1.2228 5 7 2.8313 -1.9237 -0.7080 6 6 3.9751 -2.2263 -1.5787 7 1 4.5978 -1.3414 -1.7104 8 6 4.8071 -3.3912 -0.9938 9 6 4.1964 -4.6101 -1.7203 10 7 3.6390 -4.0817 -2.9709 11 6 3.4989 -2.7460 -2.9172 12 8 3.0544 -2.0577 -3.8113 13 6 3.2855 -1.5349 0.6516 14 6 2.0665 -0.7713 1.2277 15 1 1.3185 -1.4682 1.6059 16 7 2.4865 0.1571 2.2804 17 6 2.6007 -0.2735 3.5523 18 8 2.3563 -1.4296 3.8255 19 6 3.0333 0.6813 4.6350 20 16 3.0901 -0.1899 6.2205 21 6 3.6080 1.1246 7.2735 22 1 3.7898 2.1064 6.8621 23 6 3.7885 0.8965 8.6307 24 7 3.5673 -0.3003 9.1321 25 14 4.3450 2.2881 9.7457 26 1 3.3507 3.3900 9.6961 27 1 4.4612 1.7891 11.1396 28 1 5.6650 2.7914 9.2879 29 1 -0.3634 0.4802 0.9085 30 1 -0.3633 0.5467 -0.8702 31 1 -0.3634 -1.0270 -0.0384 32 1 3.1514 1.4179 -0.0383 33 1 1.6759 1.9652 -0.8702 34 1 1.7382 1.9421 0.9086 35 1 2.7163 -0.1226 -1.8112 36 1 1.2348 -1.1176 -1.8374 37 1 5.8628 -3.2788 -1.2404 38 1 4.6664 -3.4682 0.0843 39 1 4.9695 -5.3481 -1.9339 40 1 3.4072 -5.0543 -1.1136 41 1 3.4022 -4.6266 -3.7378 42 1 4.1563 -0.8818 0.5942 43 1 3.5046 -2.4183 1.2514 44 1 2.6823 1.0816 2.0618 45 1 2.3221 1.5049 4.6986 46 1 4.0229 1.0732 4.3997 47 1 3.6931 -0.4596 10.0806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282787305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:43 Heat of formation + Delta-G solvation = -87.722787 kcal Electronic energy + Delta-G solvation = -27982.652327 eV Core-core repulsion = 24097.379988 eV Total energy + Delta-G solvation = -3885.272339 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.98714 -40.94495 -39.51572 -37.51284 -35.73098 -34.56746 -34.35004 -31.58267 -31.08499 -29.31234 -28.36220 -27.80604 -27.56718 -25.85402 -23.57992 -22.31223 -21.46821 -21.13906 -20.27130 -19.68230 -18.45175 -18.07142 -17.84556 -17.12323 -16.85713 -16.47157 -16.44094 -15.94575 -15.78023 -15.38681 -15.06724 -14.99900 -14.74525 -14.61097 -14.46991 -14.44270 -13.99380 -13.81272 -13.62418 -13.49083 -13.15575 -13.08553 -12.86107 -12.77370 -12.64422 -12.60305 -12.48240 -12.31438 -11.93287 -11.73126 -11.68780 -11.55148 -11.11025 -10.96448 -10.90106 -10.24933 -10.11720 -10.08081 -9.59696 -8.63345 -8.32634 -6.09885 1.27262 1.36516 1.44952 1.48743 1.58110 1.63832 2.21416 2.29858 2.40399 2.98345 3.01451 3.15434 3.35001 3.45106 3.48573 3.55839 3.80985 3.96784 3.99882 4.14260 4.20142 4.24903 4.26919 4.33326 4.41941 4.53837 4.60075 4.68997 4.74009 4.77144 4.77391 4.87439 4.92643 4.95623 5.01243 5.06891 5.12041 5.24726 5.34667 5.41103 5.43891 5.66568 5.79425 5.85114 5.98318 6.21648 6.50132 7.08873 7.19797 7.26007 8.76134 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.002326 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.708435 B =12035.276180 C =12844.703407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.072 4.072 3 C -0.149 4.149 4 C 0.053 3.947 5 N -0.500 5.500 6 C 0.039 3.961 7 H 0.081 0.919 8 C -0.130 4.130 9 C 0.106 3.894 10 N -0.715 5.715 11 C 0.526 3.474 12 O -0.576 6.576 13 C 0.034 3.966 14 C 0.152 3.848 15 H 0.080 0.920 16 N -0.706 5.706 17 C 0.537 3.463 18 O -0.558 6.558 19 C -0.131 4.131 20 S -0.146 6.146 21 C -0.547 4.547 22 H 0.082 0.918 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.996 3.004 26 H -0.263 1.263 27 H -0.280 1.280 28 H -0.262 1.262 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.418 0.582 42 H 0.062 0.938 43 H 0.083 0.917 44 H 0.415 0.585 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.528 -1.570 -25.250 25.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.073 4.073 3 C -0.206 4.206 4 C -0.075 4.075 5 N -0.226 5.226 6 C -0.073 4.073 7 H 0.098 0.902 8 C -0.167 4.167 9 C -0.017 4.017 10 N -0.369 5.369 11 C 0.311 3.689 12 O -0.455 6.455 13 C -0.094 4.094 14 C 0.046 3.954 15 H 0.098 0.902 16 N -0.362 5.362 17 C 0.323 3.677 18 O -0.436 6.436 19 C -0.282 4.282 20 S 0.081 5.919 21 C -0.695 4.695 22 H 0.100 0.900 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.818 3.182 26 H -0.188 1.188 27 H -0.205 1.205 28 H -0.186 1.186 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.127 0.873 40 H 0.095 0.905 41 H 0.257 0.743 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.256 0.744 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.613 -3.659 -25.027 25.301 hybrid contribution 0.887 2.506 0.101 2.660 sum 1.500 -1.153 -24.926 24.997 Atomic orbital electron populations 1.21844 0.92688 1.02175 1.02538 1.21591 0.97136 0.96156 0.92380 1.21952 1.01418 0.93745 1.03489 1.22959 0.98051 0.90629 0.95813 1.64666 1.19377 1.37092 1.01508 1.22600 0.92922 1.00215 0.91593 0.90152 1.22834 0.99760 0.92036 1.02114 1.22206 0.99065 0.96643 0.83825 1.46172 1.64487 1.07419 1.18842 1.20846 0.76353 0.83374 0.88289 1.90715 1.47859 1.62511 1.44420 1.23546 0.96973 0.99765 0.89152 1.21789 0.95919 0.90998 0.86657 0.90210 1.45968 1.69760 1.14821 1.05692 1.20055 0.76177 0.87888 0.83625 1.90698 1.50000 1.20201 1.82653 1.23381 1.05823 1.01956 0.97055 1.85553 1.89432 1.18381 0.98529 1.23177 1.52878 0.97762 0.95644 0.89956 1.26100 0.94811 0.99245 0.98946 1.70173 1.47116 1.23163 1.14273 0.85038 0.79191 0.77516 0.76471 1.18751 1.20500 1.18645 0.92457 0.90890 0.92784 0.91664 0.90396 0.91038 0.92592 0.90779 0.87630 0.88402 0.87308 0.90452 0.74257 0.91947 0.89887 0.74432 0.87402 0.87182 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.23 71.98 0.59 -1.69 16 2 C -0.07 -1.22 0.95 -51.31 -0.05 -1.27 16 3 C -0.15 -1.94 7.10 71.98 0.51 -1.43 16 4 C 0.05 1.00 5.20 86.44 0.45 1.45 16 5 N -0.50 -9.52 5.12 -857.86 -4.39 -13.91 16 6 C 0.04 0.64 2.35 44.91 0.11 0.75 16 7 H 0.08 1.30 7.98 -2.38 -0.02 1.28 16 8 C -0.13 -1.44 6.66 31.65 0.21 -1.23 16 9 C 0.11 0.98 7.78 86.83 0.68 1.66 16 10 N -0.71 -9.64 6.24 -459.83 -2.87 -12.51 16 11 C 0.53 10.64 7.62 87.90 0.67 11.31 16 12 O -0.58 -16.19 17.64 -3.02 -0.05 -16.25 16 13 C 0.03 0.70 5.33 86.65 0.46 1.16 16 14 C 0.15 3.41 2.76 46.20 0.13 3.54 16 15 H 0.08 2.25 7.42 -2.38 -0.02 2.23 16 16 N -0.71 -16.78 4.99 -436.82 -2.18 -18.96 16 17 C 0.54 18.65 7.84 87.66 0.69 19.34 16 18 O -0.56 -24.48 15.59 -3.03 -0.05 -24.53 16 19 C -0.13 -4.95 6.16 71.24 0.44 -4.51 16 20 S -0.15 -7.89 20.57 -56.49 -1.16 -9.06 16 21 C -0.55 -30.60 9.50 67.96 0.65 -29.96 16 22 H 0.08 4.26 7.80 -2.92 -0.02 4.24 16 23 C 0.01 0.78 5.49 84.86 0.47 1.24 16 24 N -0.91 -55.26 13.22 21.65 0.29 -54.97 16 25 Si 1.00 42.90 29.55 68.60 2.03 44.93 16 26 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 27 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 28 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.88 6.70 -2.38 -0.02 0.86 16 35 H 0.06 1.06 7.21 -2.38 -0.02 1.04 16 36 H 0.07 1.57 7.69 -2.39 -0.02 1.56 16 37 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.10 1.22 6.25 -2.39 -0.01 1.21 16 39 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.42 4.35 8.96 -92.70 -0.83 3.52 16 42 H 0.06 1.16 8.02 -2.39 -0.02 1.14 16 43 H 0.08 1.94 7.10 -2.39 -0.02 1.92 16 44 H 0.42 7.39 5.79 -92.71 -0.54 6.86 16 45 H 0.11 3.68 8.14 -2.39 -0.02 3.67 16 46 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 47 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -78.92 387.84 -2.77 -81.68 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -0.37 Total: 23.22 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 5.99 Total: 0.35 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -9.15 Total: -100.35 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -0.10 Total: -40.77 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: -7.89 SS G_CDS: -1.16 Total: -9.06 kcal Total: -78.92 -2.77 -81.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282787305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.038 kcal (2) G-P(sol) polarization free energy of solvation -78.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds