Wall clock time and date at job start Sat Apr 11 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30171 * 126.80178 * 2 1 4 4 O 1.20923 * 111.60389 * 179.97438 * 3 2 1 5 5 C 1.34034 * 111.56833 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.78109 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44611 * 359.97438 * 5 4 3 8 8 C 1.50700 * 128.01013 * 179.97438 * 7 5 4 9 9 N 1.46900 * 109.47497 * 89.99448 * 8 7 5 10 10 C 1.46897 * 111.00215 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47034 * 325.00154 * 10 9 8 12 12 C 1.53002 * 109.47345 * 85.00067 * 10 9 8 13 13 C 1.53004 * 109.47028 * 205.00174 * 10 9 8 14 14 N 1.46496 * 109.46949 * 55.00057 * 13 10 9 15 15 C 1.46500 * 119.99758 * 269.99396 * 14 13 10 16 16 C 1.34773 * 120.00086 * 90.00360 * 14 13 10 17 17 O 1.21278 * 120.00307 * 359.97438 * 16 14 13 18 18 C 1.50699 * 120.00085 * 179.97438 * 16 14 13 19 19 S 1.80998 * 109.47380 * 179.97438 * 18 16 14 20 20 C 1.76201 * 100.00371 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99798 * 0.02562 * 20 19 18 22 22 C 1.38795 * 120.00201 * 179.97438 * 20 19 18 23 23 N 1.31634 * 120.00012 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00145 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47521 * 89.99812 * 24 22 20 26 26 H 1.48497 * 109.47168 * 210.00106 * 24 22 20 27 27 H 1.48507 * 109.46980 * 329.99842 * 24 22 20 28 28 H 1.09003 * 109.46685 * 90.01751 * 1 2 3 29 29 H 1.09000 * 109.47092 * 210.01902 * 1 2 3 30 30 H 1.09002 * 109.46993 * 330.02722 * 1 2 3 31 31 H 1.09002 * 109.47047 * 0.02562 * 6 5 4 32 32 H 1.08998 * 109.47490 * 120.01955 * 6 5 4 33 33 H 1.09003 * 109.47634 * 240.02910 * 6 5 4 34 34 H 1.08999 * 109.47406 * 209.99865 * 8 7 5 35 35 H 1.09004 * 109.46678 * 329.99675 * 8 7 5 36 36 H 1.00903 * 111.00074 * 303.95595 * 9 8 7 37 37 H 1.09000 * 109.47024 * 179.97438 * 12 10 9 38 38 H 1.09000 * 109.46796 * 300.00310 * 12 10 9 39 39 H 1.08999 * 109.46724 * 59.99613 * 12 10 9 40 40 H 1.09006 * 109.46535 * 175.00034 * 13 10 9 41 41 H 1.09001 * 109.46919 * 294.99689 * 13 10 9 42 42 H 1.09007 * 109.46687 * 90.00607 * 15 14 13 43 43 H 1.09000 * 109.47340 * 210.00032 * 15 14 13 44 44 H 1.08996 * 109.47608 * 330.00568 * 15 14 13 45 45 H 1.08997 * 109.47271 * 299.99754 * 18 16 14 46 46 H 1.09004 * 109.47258 * 59.99828 * 18 16 14 47 47 H 0.96995 * 119.99373 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6068 0.0004 6 6 4.9021 -1.3696 0.0003 7 6 2.3540 -1.1320 0.0003 8 6 1.9591 -2.5863 -0.0005 9 7 1.8310 -3.0597 1.3843 10 6 1.4468 -4.4771 1.4227 11 1 0.7769 -4.6946 0.5909 12 6 2.6994 -5.3484 1.3101 13 6 0.7342 -4.7766 2.7431 14 7 -0.3969 -3.8601 2.9064 15 6 -0.2066 -2.5751 3.5837 16 6 -1.6127 -4.1991 2.4337 17 8 -1.7703 -5.2627 1.8728 18 6 -2.7764 -3.2565 2.6022 19 16 -4.2588 -3.9907 1.8678 20 6 -5.4280 -2.7144 2.1976 21 1 -5.1178 -1.8184 2.7147 22 6 -6.7474 -2.8602 1.7922 23 7 -7.1253 -3.9521 1.1616 24 14 -7.9867 -1.5068 2.1412 25 1 -8.0047 -0.5476 1.0078 26 1 -9.3368 -2.1027 2.3069 27 1 -7.6039 -0.7943 3.3867 28 1 -0.3633 -0.0003 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3633 0.8902 0.5134 31 1 5.7357 -0.6672 0.0009 32 1 4.9553 -1.9970 0.8900 33 1 4.9557 -1.9962 -0.8900 34 1 1.0049 -2.7035 -0.5142 35 1 2.7227 -3.1699 -0.5148 36 1 2.6836 -2.9024 1.9005 37 1 2.4143 -6.4000 1.3391 38 1 3.2070 -5.1349 0.3695 39 1 3.3693 -5.1308 2.1420 40 1 0.3709 -5.8043 2.7348 41 1 1.4314 -4.6444 3.5704 42 1 0.0678 -1.8156 2.8515 43 1 -1.1331 -2.2844 4.0788 44 1 0.5873 -2.6689 4.3247 45 1 -2.9474 -3.0764 3.6635 46 1 -2.5543 -2.3124 2.1047 47 1 -8.0475 -4.0540 0.8786 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283573397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:56 Heat of formation + Delta-G solvation = 20.785160 kcal Electronic energy + Delta-G solvation = -27991.614174 eV Core-core repulsion = 24111.047093 eV Total energy + Delta-G solvation = -3880.567081 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.07711 -39.52377 -37.64835 -35.49945 -34.49448 -33.74361 -32.39883 -31.25338 -29.36568 -28.72757 -28.11399 -27.07217 -25.89971 -25.50435 -24.87054 -21.71772 -21.31224 -20.26465 -19.08625 -17.84839 -17.58753 -17.22494 -16.53018 -16.09222 -15.58104 -15.34153 -15.10197 -14.77781 -14.52422 -14.24286 -13.88367 -13.73797 -13.61427 -13.35949 -13.20201 -13.02446 -12.88004 -12.76279 -12.73381 -12.52699 -12.46716 -12.36044 -12.12362 -11.89042 -11.86112 -11.48158 -11.12124 -11.07111 -11.04116 -10.98928 -10.72621 -9.97462 -9.76706 -9.43233 -9.26230 -9.03747 -8.81174 -8.19724 -8.15651 -6.46003 -6.18887 -3.88649 1.23776 2.03624 2.89420 3.05439 3.17619 3.24184 3.29608 3.33475 3.70094 3.94547 4.15793 4.23695 4.25113 4.50431 4.68936 4.73556 4.85912 4.94311 5.02373 5.03917 5.10315 5.16121 5.16284 5.29863 5.31800 5.36881 5.42704 5.45753 5.51244 5.57970 5.62141 5.68644 5.71885 5.75892 5.79181 5.85012 5.89004 5.99199 6.02966 6.14865 6.22129 6.71583 6.80257 7.15229 7.62471 7.71215 8.14635 8.38291 8.69012 9.26674 10.88526 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012051 B = 0.002983 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.849084 B = 9382.920455 C =11061.192430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.043 3.957 3 N -0.371 5.371 4 O 0.094 5.906 5 C -0.034 4.034 6 C -0.072 4.072 7 C -0.193 4.193 8 C 0.139 3.861 9 N -0.669 5.669 10 C 0.065 3.935 11 H 0.087 0.913 12 C -0.179 4.179 13 C 0.132 3.868 14 N -0.606 5.606 15 C 0.093 3.907 16 C 0.533 3.467 17 O -0.524 6.524 18 C -0.148 4.148 19 S -0.064 6.064 20 C -0.533 4.533 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.917 3.083 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.336 0.664 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.394 3.334 0.559 26.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 N -0.078 5.078 4 O 0.030 5.970 5 C -0.099 4.099 6 C -0.130 4.130 7 C -0.197 4.197 8 C 0.010 3.990 9 N -0.300 5.300 10 C -0.046 4.046 11 H 0.105 0.895 12 C -0.239 4.239 13 C 0.008 3.992 14 N -0.340 5.340 15 C -0.050 4.050 16 C 0.321 3.679 17 O -0.400 6.400 18 C -0.298 4.298 19 S 0.163 5.837 20 C -0.681 4.681 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.743 3.257 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.154 0.846 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 25.139 3.218 -0.272 25.346 hybrid contribution 0.204 1.062 0.591 1.232 sum 25.344 4.280 0.319 25.704 Atomic orbital electron populations 1.20238 0.85497 1.04457 1.03554 1.23495 0.99092 0.88039 1.00960 1.73863 0.89160 1.23973 1.20798 1.84809 1.21898 1.22295 1.68002 1.24235 0.98039 0.84203 1.03395 1.20299 0.90303 0.98580 1.03784 1.20846 0.91370 0.97401 1.10058 1.20097 1.01185 0.87202 0.90510 1.60554 1.39108 1.17965 1.12382 1.22086 0.96032 0.86241 1.00230 0.89493 1.22427 0.98276 1.01554 1.01599 1.21369 0.87569 0.94575 0.95667 1.47542 1.08161 1.19371 1.58959 1.21670 1.01347 0.85357 0.96663 1.20270 0.83031 0.87095 0.77541 1.90676 1.83647 1.24121 1.41507 1.23530 0.99352 1.01860 1.05078 1.85358 0.96776 1.26821 1.74756 1.22859 0.96012 1.05338 1.43885 0.91014 1.24979 0.97576 0.96371 0.94643 1.70022 1.17996 1.25714 1.36636 0.86196 0.79777 0.80922 0.78780 1.20291 1.20798 1.19692 0.90198 0.89141 0.90537 0.89896 0.89494 0.89413 0.89469 0.94023 0.84570 0.91485 0.92633 0.92414 0.89639 0.91221 0.91865 0.91782 0.92243 0.89531 0.89433 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.39 36.01 0.37 -0.53 16 2 C 0.04 0.52 7.33 -82.10 -0.60 -0.08 16 3 N -0.37 -4.85 12.07 33.42 0.40 -4.45 16 4 O 0.09 1.06 11.20 17.19 0.19 1.25 16 5 C -0.03 -0.30 7.49 -35.31 -0.26 -0.56 16 6 C -0.07 -0.31 10.23 36.00 0.37 0.06 16 7 C -0.19 -1.89 5.83 -104.42 -0.61 -2.50 16 8 C 0.14 1.22 5.81 -4.98 -0.03 1.19 16 9 N -0.67 -5.61 4.94 -107.99 -0.53 -6.15 16 10 C 0.06 0.61 2.89 -67.71 -0.20 0.41 16 11 H 0.09 1.07 7.80 -51.93 -0.41 0.67 16 12 C -0.18 -1.21 9.16 37.16 0.34 -0.87 16 13 C 0.13 1.45 5.19 -4.04 -0.02 1.42 16 14 N -0.61 -8.21 2.73 -181.57 -0.50 -8.71 16 15 C 0.09 1.02 9.61 59.85 0.58 1.60 16 16 C 0.53 9.93 7.69 -10.99 -0.08 9.84 16 17 O -0.52 -11.66 15.44 5.56 0.09 -11.58 16 18 C -0.15 -3.01 4.71 36.01 0.17 -2.84 16 19 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 20 C -0.53 -15.17 9.50 30.94 0.29 -14.88 16 21 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 24 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 0.93 8.06 -51.93 -0.42 0.51 16 35 H 0.04 0.30 7.37 -51.93 -0.38 -0.08 16 36 H 0.34 2.33 8.46 -39.29 -0.33 2.00 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.34 7.45 -51.93 -0.39 -0.04 16 39 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 40 H 0.09 1.08 7.42 -51.93 -0.39 0.70 16 41 H 0.07 0.59 7.89 -51.93 -0.41 0.18 16 42 H 0.06 0.70 7.73 -51.92 -0.40 0.30 16 43 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 44 H 0.06 0.52 7.89 -51.93 -0.41 0.11 16 45 H 0.09 1.66 7.40 -51.92 -0.38 1.28 16 46 H 0.09 1.67 8.11 -51.91 -0.42 1.25 16 47 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 405.63 15.07 6.11 6.11 Total: -1.00 -34.97 405.63 -8.11 -43.08 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.60 Total: -0.88 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 0.22 Total: -5.72 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.11 Total: -44.79 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.28 Total: -10.33 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.97 -8.11 -43.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283573397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.869 kcal (2) G-P(sol) polarization free energy of solvation -34.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds