Wall clock time and date at job start Sat Apr 11 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30171 * 126.80178 * 2 1 4 4 O 1.20923 * 111.60389 * 179.97438 * 3 2 1 5 5 C 1.34034 * 111.56833 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.78109 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44611 * 359.97438 * 5 4 3 8 8 C 1.50700 * 128.01013 * 179.97438 * 7 5 4 9 9 N 1.46900 * 109.47497 * 89.99448 * 8 7 5 10 10 C 1.46897 * 111.00215 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47034 * 325.00154 * 10 9 8 12 12 C 1.53002 * 109.47345 * 85.00067 * 10 9 8 13 13 C 1.53004 * 109.47028 * 205.00174 * 10 9 8 14 14 N 1.46496 * 109.46949 * 55.00057 * 13 10 9 15 15 C 1.46500 * 119.99758 * 269.99396 * 14 13 10 16 16 C 1.34773 * 120.00086 * 90.00360 * 14 13 10 17 17 O 1.21278 * 120.00307 * 359.97438 * 16 14 13 18 18 C 1.50699 * 120.00085 * 179.97438 * 16 14 13 19 19 S 1.80998 * 109.47380 * 179.97438 * 18 16 14 20 20 C 1.76201 * 100.00371 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99798 * 0.02562 * 20 19 18 22 22 C 1.38795 * 120.00201 * 179.97438 * 20 19 18 23 23 N 1.31634 * 120.00012 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00145 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47521 * 89.99812 * 24 22 20 26 26 H 1.48497 * 109.47168 * 210.00106 * 24 22 20 27 27 H 1.48507 * 109.46980 * 329.99842 * 24 22 20 28 28 H 1.09003 * 109.46685 * 90.01751 * 1 2 3 29 29 H 1.09000 * 109.47092 * 210.01902 * 1 2 3 30 30 H 1.09002 * 109.46993 * 330.02722 * 1 2 3 31 31 H 1.09002 * 109.47047 * 0.02562 * 6 5 4 32 32 H 1.08998 * 109.47490 * 120.01955 * 6 5 4 33 33 H 1.09003 * 109.47634 * 240.02910 * 6 5 4 34 34 H 1.08999 * 109.47406 * 209.99865 * 8 7 5 35 35 H 1.09004 * 109.46678 * 329.99675 * 8 7 5 36 36 H 1.00903 * 111.00074 * 303.95595 * 9 8 7 37 37 H 1.09000 * 109.47024 * 179.97438 * 12 10 9 38 38 H 1.09000 * 109.46796 * 300.00310 * 12 10 9 39 39 H 1.08999 * 109.46724 * 59.99613 * 12 10 9 40 40 H 1.09006 * 109.46535 * 175.00034 * 13 10 9 41 41 H 1.09001 * 109.46919 * 294.99689 * 13 10 9 42 42 H 1.09007 * 109.46687 * 90.00607 * 15 14 13 43 43 H 1.09000 * 109.47340 * 210.00032 * 15 14 13 44 44 H 1.08996 * 109.47608 * 330.00568 * 15 14 13 45 45 H 1.08997 * 109.47271 * 299.99754 * 18 16 14 46 46 H 1.09004 * 109.47258 * 59.99828 * 18 16 14 47 47 H 0.96995 * 119.99373 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6068 0.0004 6 6 4.9021 -1.3696 0.0003 7 6 2.3540 -1.1320 0.0003 8 6 1.9591 -2.5863 -0.0005 9 7 1.8310 -3.0597 1.3843 10 6 1.4468 -4.4771 1.4227 11 1 0.7769 -4.6946 0.5909 12 6 2.6994 -5.3484 1.3101 13 6 0.7342 -4.7766 2.7431 14 7 -0.3969 -3.8601 2.9064 15 6 -0.2066 -2.5751 3.5837 16 6 -1.6127 -4.1991 2.4337 17 8 -1.7703 -5.2627 1.8728 18 6 -2.7764 -3.2565 2.6022 19 16 -4.2588 -3.9907 1.8678 20 6 -5.4280 -2.7144 2.1976 21 1 -5.1178 -1.8184 2.7147 22 6 -6.7474 -2.8602 1.7922 23 7 -7.1253 -3.9521 1.1616 24 14 -7.9867 -1.5068 2.1412 25 1 -8.0047 -0.5476 1.0078 26 1 -9.3368 -2.1027 2.3069 27 1 -7.6039 -0.7943 3.3867 28 1 -0.3633 -0.0003 -1.0277 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3633 0.8902 0.5134 31 1 5.7357 -0.6672 0.0009 32 1 4.9553 -1.9970 0.8900 33 1 4.9557 -1.9962 -0.8900 34 1 1.0049 -2.7035 -0.5142 35 1 2.7227 -3.1699 -0.5148 36 1 2.6836 -2.9024 1.9005 37 1 2.4143 -6.4000 1.3391 38 1 3.2070 -5.1349 0.3695 39 1 3.3693 -5.1308 2.1420 40 1 0.3709 -5.8043 2.7348 41 1 1.4314 -4.6444 3.5704 42 1 0.0678 -1.8156 2.8515 43 1 -1.1331 -2.2844 4.0788 44 1 0.5873 -2.6689 4.3247 45 1 -2.9474 -3.0764 3.6635 46 1 -2.5543 -2.3124 2.1047 47 1 -8.0475 -4.0540 0.8786 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283573397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:56 Heat of formation + Delta-G solvation = -2.357000 kcal Electronic energy + Delta-G solvation = -27992.617694 eV Core-core repulsion = 24111.047093 eV Total energy + Delta-G solvation = -3881.570600 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.91009 -40.80742 -38.55408 -36.51073 -35.50849 -34.57347 -34.46438 -32.09311 -30.69882 -29.62752 -28.69298 -28.03072 -27.66223 -26.65467 -25.92794 -22.53230 -22.15638 -21.00683 -20.52982 -19.45720 -18.68364 -18.05249 -17.90719 -17.15769 -16.87068 -16.76327 -16.27267 -16.00876 -15.66624 -15.41338 -14.92721 -14.59123 -14.48838 -14.37285 -14.31411 -13.95738 -13.89607 -13.67361 -13.49229 -13.45511 -13.36294 -13.26124 -13.15557 -13.13271 -12.91973 -12.88372 -12.67987 -12.58965 -12.32683 -11.91103 -11.84905 -11.68696 -11.13446 -10.83218 -10.77850 -10.23939 -10.14195 -9.72251 -9.10154 -8.64337 -8.33651 -6.10835 0.52184 1.19404 1.28732 1.41923 1.47748 1.58520 1.70077 2.24450 2.25819 2.31948 3.00292 3.16558 3.31375 3.39211 3.56468 3.78976 3.82492 4.01968 4.07205 4.20940 4.27775 4.36607 4.40271 4.44874 4.53126 4.55750 4.59250 4.64765 4.67010 4.71006 4.75171 4.80439 4.87032 4.90574 4.92884 5.00899 5.06778 5.11864 5.21196 5.28414 5.31009 5.42642 5.72909 6.00325 6.20882 6.44289 6.57629 7.07786 7.28783 7.35813 8.75546 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012051 B = 0.002983 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.849084 B = 9382.920455 C =11061.192430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.026 3.974 3 N -0.403 5.403 4 O 0.085 5.915 5 C -0.017 4.017 6 C -0.073 4.073 7 C -0.204 4.204 8 C 0.149 3.851 9 N -0.671 5.671 10 C 0.075 3.925 11 H 0.049 0.951 12 C -0.170 4.170 13 C 0.127 3.873 14 N -0.589 5.589 15 C 0.089 3.911 16 C 0.530 3.470 17 O -0.570 6.570 18 C -0.122 4.122 19 S -0.150 6.150 20 C -0.544 4.544 21 H 0.080 0.920 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.996 3.004 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.259 1.259 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.351 0.649 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.156 4.479 1.959 29.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.132 4.132 3 N -0.111 5.111 4 O 0.022 5.978 5 C -0.082 4.082 6 C -0.130 4.130 7 C -0.208 4.208 8 C 0.020 3.980 9 N -0.303 5.303 10 C -0.036 4.036 11 H 0.068 0.932 12 C -0.229 4.229 13 C 0.004 3.996 14 N -0.321 5.321 15 C -0.053 4.053 16 C 0.317 3.683 17 O -0.450 6.450 18 C -0.273 4.273 19 S 0.077 5.923 20 C -0.692 4.692 21 H 0.098 0.902 22 C -0.190 4.190 23 N -0.548 5.548 24 Si 0.818 3.182 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.183 1.183 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.171 0.829 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.125 0.875 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 27.970 4.387 1.155 28.335 hybrid contribution -0.470 0.704 0.182 0.866 sum 27.499 5.092 1.338 27.999 Atomic orbital electron populations 1.20161 0.85833 1.03919 1.03418 1.23698 0.99279 0.88954 1.01313 1.73852 0.89926 1.24925 1.22414 1.84765 1.21181 1.23796 1.68035 1.24979 0.99360 0.83152 1.00673 1.20580 0.88178 0.98752 1.05477 1.20906 0.91522 0.97226 1.11181 1.19938 1.00473 0.86959 0.90614 1.60418 1.40180 1.17204 1.12538 1.21832 0.96556 0.87462 0.97749 0.93206 1.22338 0.97040 1.00365 1.03164 1.21638 0.86984 0.92933 0.98037 1.47523 1.07078 1.20444 1.57030 1.21874 1.02400 0.83816 0.97205 1.19996 0.84203 0.86170 0.77910 1.90659 1.84523 1.25804 1.43992 1.23350 0.96742 1.02063 1.05119 1.85507 1.01142 1.29173 1.76439 1.23174 0.96561 1.05447 1.43970 0.90216 1.26091 0.99821 0.99027 0.94101 1.70184 1.18628 1.28088 1.37857 0.84994 0.76624 0.77433 0.79195 1.19346 1.20240 1.18255 0.90229 0.89863 0.90723 0.88608 0.87294 0.87870 0.92112 0.91899 0.82927 0.92205 0.91631 0.90016 0.91675 0.87463 0.91625 0.92183 0.88844 0.88102 0.88196 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.76 10.39 71.24 0.74 -1.02 16 2 C 0.03 0.62 7.33 43.58 0.32 0.94 16 3 N -0.40 -10.41 12.07 -49.56 -0.60 -11.01 16 4 O 0.08 1.81 11.20 71.69 0.80 2.61 16 5 C -0.02 -0.25 7.49 25.04 0.19 -0.07 16 6 C -0.07 -0.34 10.23 71.23 0.73 0.39 16 7 C -0.20 -3.70 5.83 -19.74 -0.12 -3.82 16 8 C 0.15 2.39 5.81 85.56 0.50 2.89 16 9 N -0.67 -9.66 4.94 -495.57 -2.45 -12.10 16 10 C 0.07 1.28 2.89 44.92 0.13 1.41 16 11 H 0.05 1.25 7.80 -2.39 -0.02 1.23 16 12 C -0.17 -1.78 9.16 71.98 0.66 -1.12 16 13 C 0.13 2.55 5.19 86.38 0.45 2.99 16 14 N -0.59 -15.23 2.73 -846.76 -2.31 -17.54 16 15 C 0.09 1.73 9.61 127.77 1.23 2.96 16 16 C 0.53 20.02 7.69 87.66 0.67 20.70 16 17 O -0.57 -26.48 15.44 -3.02 -0.05 -26.52 16 18 C -0.12 -5.01 4.71 71.24 0.34 -4.67 16 19 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 20 C -0.54 -31.47 9.50 67.95 0.65 -30.82 16 21 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 22 C 0.01 0.82 5.49 84.86 0.47 1.29 16 23 N -0.91 -56.46 13.22 21.65 0.29 -56.17 16 24 Si 1.00 44.18 29.55 68.60 2.03 46.21 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.06 1.31 8.06 -2.39 -0.02 1.29 16 35 H 0.06 0.74 7.37 -2.38 -0.02 0.73 16 36 H 0.35 3.42 8.46 -89.69 -0.76 2.67 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 0.59 7.45 -2.39 -0.02 0.57 16 39 H 0.08 0.50 8.13 -2.39 -0.02 0.49 16 40 H 0.06 1.62 7.42 -2.38 -0.02 1.60 16 41 H 0.11 1.39 7.89 -2.39 -0.02 1.37 16 42 H 0.07 1.31 7.73 -2.38 -0.02 1.29 16 43 H 0.06 1.24 6.44 -2.39 -0.02 1.23 16 44 H 0.09 1.24 7.89 -2.39 -0.02 1.22 16 45 H 0.10 3.84 7.40 -2.40 -0.02 3.82 16 46 H 0.10 3.83 8.11 -2.39 -0.02 3.81 16 47 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -80.76 405.63 3.71 -77.05 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.21 Total: 15.05 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 6.94 Total: -7.96 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -5.07 Total: -96.83 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: 0.76 Total: -23.91 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -80.76 3.71 -77.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283573397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.691 kcal (2) G-P(sol) polarization free energy of solvation -80.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds