Wall clock time and date at job start Sat Apr 11 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36877 * 126.40203 * 2 1 4 4 C 1.34667 * 106.81798 * 180.25171 * 3 2 1 5 5 N 1.34121 * 108.02225 * 359.74703 * 4 3 2 6 6 C 1.30499 * 109.25764 * 359.97438 * 5 4 3 7 7 C 1.50697 * 125.65313 * 179.97438 * 6 5 4 8 8 H 1.09009 * 112.77657 * 156.30086 * 7 6 5 9 9 N 1.47065 * 113.46929 * 25.52484 * 7 6 5 10 10 S 1.65600 * 136.05679 * 38.12535 * 9 7 6 11 11 O 1.42098 * 104.27576 * 153.56649 * 10 9 7 12 12 O 1.42102 * 104.27841 * 25.70777 * 10 9 7 13 13 C 1.81404 * 104.45074 * 269.63603 * 10 9 7 14 14 C 1.53000 * 109.46946 * 180.02562 * 13 10 9 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46678 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47258 * 119.99423 * 20 18 16 23 23 H 1.48493 * 109.47346 * 240.00028 * 20 18 16 24 24 C 1.47064 * 87.88573 * 217.87586 * 9 7 6 25 25 C 1.53502 * 87.98709 * 27.33869 * 24 9 7 26 26 C 1.52999 * 114.20696 * 87.52044 * 25 24 9 27 27 C 1.52995 * 114.20787 * 220.15218 * 25 24 9 28 28 H 1.08998 * 109.47490 * 270.18881 * 1 2 3 29 29 H 1.09007 * 109.46970 * 30.18177 * 1 2 3 30 30 H 1.08996 * 109.47674 * 150.18371 * 1 2 3 31 31 H 1.08002 * 126.58956 * 0.02583 * 3 2 1 32 32 H 1.08004 * 125.99148 * 179.76269 * 4 3 2 33 33 H 1.09002 * 109.47124 * 60.00022 * 13 10 9 34 34 H 1.09001 * 109.46975 * 300.00144 * 13 10 9 35 35 H 1.09001 * 109.47194 * 299.99756 * 14 13 10 36 36 H 1.08992 * 109.47399 * 59.99928 * 14 13 10 37 37 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 38 38 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 39 39 H 0.97000 * 119.99425 * 180.02562 * 19 18 16 40 40 H 1.08999 * 113.47092 * 142.11544 * 24 9 7 41 41 H 1.09002 * 113.46994 * 272.49969 * 24 9 7 42 42 H 1.09002 * 109.47354 * 79.50590 * 26 25 24 43 43 H 1.08994 * 109.47127 * 199.50886 * 26 25 24 44 44 H 1.09002 * 109.46972 * 319.50610 * 26 25 24 45 45 H 1.08999 * 109.47321 * 40.49040 * 27 25 24 46 46 H 1.08993 * 109.47232 * 160.49086 * 27 25 24 47 47 H 1.09000 * 109.46875 * 280.49687 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5460 0.6503 -0.0057 5 7 3.5095 -0.6904 -0.0034 6 6 2.2663 -1.0871 0.0040 7 6 1.8017 -2.5206 0.0082 8 1 0.7984 -2.6379 0.4179 9 7 2.7824 -3.4525 0.5850 10 16 3.8558 -3.4242 1.8457 11 8 4.0065 -4.7898 2.2083 12 8 3.3042 -2.4814 2.7546 13 6 5.3905 -2.7854 1.1192 14 6 6.4732 -2.7119 2.1978 15 6 7.7673 -2.1725 1.5852 16 6 8.8337 -2.0995 2.6475 17 1 8.6105 -2.4066 3.6587 18 6 10.0941 -1.6406 2.3288 19 7 10.3660 -1.2671 1.0974 20 14 11.4161 -1.5507 3.6455 21 1 10.8603 -2.0255 4.9381 22 1 12.5634 -2.4087 3.2545 23 1 11.8754 -0.1461 3.7908 24 6 2.3857 -4.4228 -0.4464 25 6 2.0003 -3.2349 -1.3389 26 6 3.1519 -2.6842 -2.1823 27 6 0.7114 -3.4419 -2.1368 28 1 -0.3634 0.0034 1.0276 29 1 -0.3633 0.8884 -0.5167 30 1 -0.3634 -0.8916 -0.5109 31 1 1.9614 2.1345 0.0004 32 1 4.4369 1.2609 -0.0108 33 1 5.2132 -1.7895 0.7133 34 1 5.7185 -3.4504 0.3203 35 1 6.1454 -2.0471 2.9970 36 1 6.6503 -3.7079 2.6033 37 1 8.0954 -2.8369 0.7858 38 1 7.5899 -1.1764 1.1798 39 1 11.2529 -0.9446 0.8731 40 1 3.2194 -5.0064 -0.8369 41 1 1.5371 -5.0423 -0.1563 42 1 3.2994 -3.3201 -3.0552 43 1 2.9127 -1.6715 -2.5068 44 1 4.0640 -2.6686 -1.5858 45 1 -0.0284 -3.9393 -1.5095 46 1 0.3240 -2.4753 -2.4585 47 1 0.9203 -4.0588 -3.0108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309513204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:04 Heat of formation + Delta-G solvation = 21.886101 kcal Electronic energy + Delta-G solvation = -29277.862179 eV Core-core repulsion = 25397.342839 eV Total energy + Delta-G solvation = -3880.519341 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.34008 -40.08931 -36.66718 -35.55323 -34.48983 -34.16222 -32.30546 -32.02063 -30.31154 -27.77313 -27.52351 -27.31697 -25.86622 -25.70099 -23.45585 -21.48457 -20.61118 -20.33712 -19.04020 -18.27797 -17.56032 -17.03680 -16.41258 -16.35373 -15.68014 -15.55830 -15.08877 -14.78033 -14.41865 -14.40243 -14.25565 -14.00375 -13.58392 -13.29369 -13.13917 -12.97134 -12.73780 -12.55926 -12.41897 -12.15308 -12.11953 -12.03713 -11.75546 -11.64736 -11.54670 -11.48324 -11.07414 -10.89441 -10.85341 -10.69145 -10.59843 -10.28218 -9.96808 -9.72084 -9.63852 -9.45088 -9.12694 -8.85626 -8.41320 -8.30445 -5.95360 -3.97495 0.62574 1.86549 2.54525 2.86923 3.14531 3.35500 3.42551 3.48160 3.89200 4.07610 4.25339 4.33990 4.38343 4.41730 4.51069 4.61346 4.76460 4.79071 4.88926 5.01256 5.12655 5.29987 5.33858 5.38579 5.40825 5.42655 5.44927 5.56748 5.64657 5.68334 5.75905 5.81548 5.86800 5.95394 6.09680 6.22261 6.35147 6.39697 6.50882 6.68581 6.83098 7.05782 7.05909 7.72463 7.84716 8.03861 8.04519 8.45747 9.09087 9.66181 11.15849 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014254 B = 0.003434 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.840044 B = 8151.532657 C = 8848.450091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.453 5.453 3 C -0.056 4.056 4 C -0.014 4.014 5 N -0.477 5.477 6 C 0.197 3.803 7 C 0.248 3.752 8 H 0.103 0.897 9 N -1.025 6.025 10 S 2.617 3.383 11 O -0.967 6.967 12 O -0.959 6.959 13 C -0.599 4.599 14 C -0.103 4.103 15 C 0.034 3.966 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.132 3.868 25 C -0.087 4.087 26 C -0.122 4.122 27 C -0.137 4.137 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.175 0.825 32 H 0.175 0.825 33 H 0.159 0.841 34 H 0.121 0.879 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.020 0.980 38 H 0.022 0.978 39 H 0.259 0.741 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.981 0.517 -10.214 27.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.137 5.137 3 C -0.188 4.188 4 C -0.162 4.162 5 N -0.196 5.196 6 C -0.066 4.066 7 C 0.138 3.862 8 H 0.120 0.880 9 N -0.860 5.860 10 S 2.718 3.282 11 O -0.958 6.958 12 O -0.950 6.950 13 C -0.733 4.733 14 C -0.142 4.142 15 C -0.004 4.004 16 C -0.561 4.561 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.006 3.994 25 C -0.090 4.090 26 C -0.179 4.179 27 C -0.195 4.195 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.192 0.808 32 H 0.192 0.808 33 H 0.177 0.823 34 H 0.139 0.861 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.038 0.962 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.395 -0.218 -9.205 27.013 hybrid contribution 0.417 1.102 0.300 1.216 sum -24.978 0.884 -8.905 26.533 Atomic orbital electron populations 1.22076 0.76906 1.04577 1.03816 1.45116 1.07362 1.06446 1.54752 1.22701 0.91299 0.92321 1.12497 1.22401 0.96688 0.90838 1.06311 1.69993 1.17864 1.12531 1.19174 1.23087 0.86393 0.90301 1.06792 1.20412 0.91809 0.81155 0.92789 0.87983 1.60197 1.52056 1.24335 1.49401 1.04894 0.76291 0.74203 0.72783 1.93537 1.86907 1.34535 1.80834 1.93526 1.76867 1.64679 1.59907 1.30606 1.16106 1.15151 1.11414 1.21465 0.96132 1.01554 0.95092 1.19025 0.88892 0.96497 0.96015 1.21329 0.95815 1.42944 0.95983 0.92476 1.25009 0.98561 0.95410 0.95406 1.69983 1.21309 1.44163 1.17958 0.86535 0.81761 0.77622 0.82112 1.19665 1.21007 1.21013 1.22591 1.00319 0.91728 0.84745 1.22557 0.97496 0.95804 0.93156 1.21508 0.97289 1.00322 0.98801 1.21716 0.95481 1.02015 1.00294 0.90359 0.89450 0.89523 0.80758 0.80797 0.82303 0.86084 0.92052 0.92256 0.96200 0.95921 0.93093 0.89701 0.89622 0.92140 0.92338 0.90547 0.92014 0.92306 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.37 10.83 59.85 0.65 1.02 16 2 N -0.45 -4.60 3.15 -121.28 -0.38 -4.98 16 3 C -0.06 -0.59 11.58 -16.56 -0.19 -0.78 16 4 C -0.01 -0.19 11.87 -17.82 -0.21 -0.40 16 5 N -0.48 -7.20 7.51 -10.82 -0.08 -7.28 16 6 C 0.20 2.50 6.02 -155.41 -0.94 1.57 16 7 C 0.25 2.70 3.62 -73.42 -0.27 2.44 16 8 H 0.10 0.87 7.64 -51.92 -0.40 0.47 16 9 N -1.02 -13.95 3.63 -118.93 -0.43 -14.39 16 10 S 2.62 47.64 5.67 -107.50 -0.61 47.03 16 11 O -0.97 -19.74 18.07 -57.54 -1.04 -20.78 16 12 O -0.96 -20.01 18.07 -57.54 -1.04 -21.04 16 13 C -0.60 -11.36 6.08 37.16 0.23 -11.13 16 14 C -0.10 -2.34 5.16 -26.73 -0.14 -2.48 16 15 C 0.03 0.93 4.97 -27.88 -0.14 0.79 16 16 C -0.52 -15.41 9.11 -34.44 -0.31 -15.73 16 17 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.38 13.29 55.43 0.74 -26.64 16 20 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 C 0.13 1.28 7.83 -8.51 -0.07 1.22 16 25 C -0.09 -0.74 1.44 -153.86 -0.22 -0.96 16 26 C -0.12 -1.21 7.89 37.16 0.29 -0.92 16 27 C -0.14 -0.72 9.25 37.16 0.34 -0.37 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.31 7.58 -51.93 -0.39 -0.09 16 31 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.17 2.15 8.06 -52.48 -0.42 1.73 16 33 H 0.16 3.02 5.57 -51.92 -0.29 2.73 16 34 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 35 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 41 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.61 7.77 -51.93 -0.40 0.21 16 44 H 0.08 0.95 7.53 -51.93 -0.39 0.56 16 45 H 0.06 0.25 8.04 -51.93 -0.42 -0.17 16 46 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 395.22 15.07 5.96 5.96 Total: -1.00 -39.04 395.22 -10.73 -49.76 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -7.75 Total: -0.74 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -1.07 Total: -24.17 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.16 Total: -53.29 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -2.08 Total: -41.82 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 47.64 SS G_CDS: -0.61 Total: 47.03 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -39.04 -10.73 -49.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309513204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.651 kcal (2) G-P(sol) polarization free energy of solvation -39.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds