Wall clock time and date at job start Sat Apr 11 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36877 * 126.40203 * 2 1 4 4 C 1.34667 * 106.81798 * 180.25171 * 3 2 1 5 5 N 1.34121 * 108.02225 * 359.74703 * 4 3 2 6 6 C 1.30499 * 109.25764 * 359.97438 * 5 4 3 7 7 C 1.50697 * 125.65313 * 179.97438 * 6 5 4 8 8 H 1.09009 * 112.77657 * 156.30086 * 7 6 5 9 9 N 1.47065 * 113.46929 * 25.52484 * 7 6 5 10 10 S 1.65600 * 136.05679 * 38.12535 * 9 7 6 11 11 O 1.42098 * 104.27576 * 153.56649 * 10 9 7 12 12 O 1.42102 * 104.27841 * 25.70777 * 10 9 7 13 13 C 1.81404 * 104.45074 * 269.63603 * 10 9 7 14 14 C 1.53000 * 109.46946 * 180.02562 * 13 10 9 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46678 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47258 * 119.99423 * 20 18 16 23 23 H 1.48493 * 109.47346 * 240.00028 * 20 18 16 24 24 C 1.47064 * 87.88573 * 217.87586 * 9 7 6 25 25 C 1.53502 * 87.98709 * 27.33869 * 24 9 7 26 26 C 1.52999 * 114.20696 * 87.52044 * 25 24 9 27 27 C 1.52995 * 114.20787 * 220.15218 * 25 24 9 28 28 H 1.08998 * 109.47490 * 270.18881 * 1 2 3 29 29 H 1.09007 * 109.46970 * 30.18177 * 1 2 3 30 30 H 1.08996 * 109.47674 * 150.18371 * 1 2 3 31 31 H 1.08002 * 126.58956 * 0.02583 * 3 2 1 32 32 H 1.08004 * 125.99148 * 179.76269 * 4 3 2 33 33 H 1.09002 * 109.47124 * 60.00022 * 13 10 9 34 34 H 1.09001 * 109.46975 * 300.00144 * 13 10 9 35 35 H 1.09001 * 109.47194 * 299.99756 * 14 13 10 36 36 H 1.08992 * 109.47399 * 59.99928 * 14 13 10 37 37 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 38 38 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 39 39 H 0.97000 * 119.99425 * 180.02562 * 19 18 16 40 40 H 1.08999 * 113.47092 * 142.11544 * 24 9 7 41 41 H 1.09002 * 113.46994 * 272.49969 * 24 9 7 42 42 H 1.09002 * 109.47354 * 79.50590 * 26 25 24 43 43 H 1.08994 * 109.47127 * 199.50886 * 26 25 24 44 44 H 1.09002 * 109.46972 * 319.50610 * 26 25 24 45 45 H 1.08999 * 109.47321 * 40.49040 * 27 25 24 46 46 H 1.08993 * 109.47232 * 160.49086 * 27 25 24 47 47 H 1.09000 * 109.46875 * 280.49687 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5460 0.6503 -0.0057 5 7 3.5095 -0.6904 -0.0034 6 6 2.2663 -1.0871 0.0040 7 6 1.8017 -2.5206 0.0082 8 1 0.7984 -2.6379 0.4179 9 7 2.7824 -3.4525 0.5850 10 16 3.8558 -3.4242 1.8457 11 8 4.0065 -4.7898 2.2083 12 8 3.3042 -2.4814 2.7546 13 6 5.3905 -2.7854 1.1192 14 6 6.4732 -2.7119 2.1978 15 6 7.7673 -2.1725 1.5852 16 6 8.8337 -2.0995 2.6475 17 1 8.6105 -2.4066 3.6587 18 6 10.0941 -1.6406 2.3288 19 7 10.3660 -1.2671 1.0974 20 14 11.4161 -1.5507 3.6455 21 1 10.8603 -2.0255 4.9381 22 1 12.5634 -2.4087 3.2545 23 1 11.8754 -0.1461 3.7908 24 6 2.3857 -4.4228 -0.4464 25 6 2.0003 -3.2349 -1.3389 26 6 3.1519 -2.6842 -2.1823 27 6 0.7114 -3.4419 -2.1368 28 1 -0.3634 0.0034 1.0276 29 1 -0.3633 0.8884 -0.5167 30 1 -0.3634 -0.8916 -0.5109 31 1 1.9614 2.1345 0.0004 32 1 4.4369 1.2609 -0.0108 33 1 5.2132 -1.7895 0.7133 34 1 5.7185 -3.4504 0.3203 35 1 6.1454 -2.0471 2.9970 36 1 6.6503 -3.7079 2.6033 37 1 8.0954 -2.8369 0.7858 38 1 7.5899 -1.1764 1.1798 39 1 11.2529 -0.9446 0.8731 40 1 3.2194 -5.0064 -0.8369 41 1 1.5371 -5.0423 -0.1563 42 1 3.2994 -3.3201 -3.0552 43 1 2.9127 -1.6715 -2.5068 44 1 4.0640 -2.6686 -1.5858 45 1 -0.0284 -3.9393 -1.5095 46 1 0.3240 -2.4753 -2.4585 47 1 0.9203 -4.0588 -3.0108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309513204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:03 Heat of formation + Delta-G solvation = -5.267420 kcal Electronic energy + Delta-G solvation = -29279.039644 eV Core-core repulsion = 25397.342839 eV Total energy + Delta-G solvation = -3881.696806 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.17479 -40.90659 -38.21335 -37.11128 -36.48679 -34.92858 -34.16460 -33.07115 -31.17022 -29.66746 -28.27947 -27.95163 -26.66363 -26.61889 -25.49178 -22.37058 -22.32761 -21.38314 -20.16835 -19.21815 -18.70071 -18.56029 -17.92413 -17.53178 -17.03136 -16.68836 -16.49095 -16.07190 -15.91967 -15.41672 -15.16994 -15.05970 -14.50896 -14.36679 -14.10519 -14.06634 -13.76088 -13.64325 -13.56393 -13.53240 -13.27569 -13.21385 -13.10109 -13.01122 -12.95054 -12.77349 -12.76811 -12.61658 -12.20292 -12.08103 -11.82332 -11.73420 -11.39286 -11.31855 -11.06453 -10.79985 -10.59523 -10.49239 -10.12712 -9.28592 -8.23226 -6.35338 -0.80008 1.01993 1.37731 1.38510 1.52500 1.59194 1.95872 2.16880 2.38770 2.75404 2.95662 3.09187 3.28508 3.34507 3.54584 3.80568 3.89396 3.92975 4.01890 4.09527 4.29566 4.36965 4.40731 4.45848 4.54595 4.59244 4.65252 4.72905 4.77712 4.86658 4.87840 4.93898 4.98389 5.02755 5.08674 5.15609 5.17367 5.30562 5.35254 5.42331 5.54445 5.59894 5.63602 5.77209 5.88431 6.17755 6.27992 6.79222 7.15707 7.33589 8.88774 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014254 B = 0.003434 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.840044 B = 8151.532657 C = 8848.450091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.450 5.450 3 C -0.035 4.035 4 C -0.064 4.064 5 N -0.519 5.519 6 C 0.179 3.821 7 C 0.240 3.760 8 H 0.135 0.865 9 N -1.033 6.033 10 S 2.646 3.354 11 O -0.992 6.992 12 O -0.989 6.989 13 C -0.603 4.603 14 C -0.100 4.100 15 C 0.040 3.960 16 C -0.553 4.553 17 H 0.058 0.942 18 C 0.003 3.997 19 N -0.929 5.929 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.274 1.274 24 C 0.123 3.877 25 C -0.068 4.068 26 C -0.121 4.121 27 C -0.130 4.130 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.211 0.789 32 H 0.165 0.835 33 H 0.156 0.844 34 H 0.132 0.868 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.001 0.999 38 H -0.002 1.002 39 H 0.265 0.735 40 H 0.086 0.914 41 H 0.118 0.882 42 H 0.076 0.924 43 H 0.049 0.951 44 H 0.043 0.957 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.781 0.085 -10.670 30.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.132 5.132 3 C -0.169 4.169 4 C -0.212 4.212 5 N -0.238 5.238 6 C -0.084 4.084 7 C 0.132 3.868 8 H 0.152 0.848 9 N -0.872 5.872 10 S 2.747 3.253 11 O -0.982 6.982 12 O -0.980 6.980 13 C -0.735 4.735 14 C -0.139 4.139 15 C 0.001 3.999 16 C -0.591 4.591 17 H 0.077 0.923 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.791 3.209 21 H -0.189 1.189 22 H -0.199 1.199 23 H -0.200 1.200 24 C -0.001 4.001 25 C -0.072 4.072 26 C -0.178 4.178 27 C -0.188 4.188 28 H 0.101 0.899 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.228 0.772 32 H 0.183 0.817 33 H 0.174 0.826 34 H 0.150 0.850 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.019 0.981 38 H 0.016 0.984 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.136 0.864 42 H 0.095 0.905 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -28.204 -0.652 -9.662 29.820 hybrid contribution 1.202 1.285 0.322 1.789 sum -27.002 0.634 -9.340 28.579 Atomic orbital electron populations 1.22497 0.73778 1.07096 1.04933 1.45399 1.09176 1.05388 1.53233 1.23155 0.90308 0.93874 1.09547 1.22564 0.98173 0.90942 1.09474 1.69858 1.20008 1.13454 1.20515 1.23390 0.86279 0.91649 1.07088 1.20994 0.92021 0.79919 0.93871 0.84805 1.59804 1.51512 1.26873 1.49042 1.03589 0.75876 0.72932 0.72947 1.93496 1.87376 1.35455 1.81913 1.93475 1.77140 1.65495 1.61881 1.30589 1.16581 1.15719 1.10569 1.21265 0.95538 1.01143 0.95947 1.18867 0.90852 0.94870 0.95289 1.21734 0.97071 1.43775 0.96536 0.92329 1.25978 1.01065 0.94543 0.97955 1.70105 1.22266 1.44439 1.20061 0.85371 0.78389 0.78122 0.79017 1.18858 1.19883 1.19991 1.23061 1.01466 0.92054 0.83514 1.22447 0.98525 0.94040 0.92171 1.21469 0.96744 1.00432 0.99200 1.21713 0.93606 1.03089 1.00387 0.89852 0.86922 0.87238 0.77246 0.81741 0.82622 0.84970 0.92559 0.91957 0.98087 0.98360 0.92572 0.89573 0.86447 0.90482 0.93178 0.93800 0.89853 0.91344 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 10.83 127.77 1.38 1.79 16 2 N -0.45 -8.27 3.15 -537.62 -1.69 -9.96 16 3 C -0.03 -0.70 11.58 83.09 0.96 0.26 16 4 C -0.06 -1.83 11.87 83.52 0.99 -0.84 16 5 N -0.52 -16.38 7.51 -188.13 -1.41 -17.79 16 6 C 0.18 4.42 6.02 138.13 0.83 5.25 16 7 C 0.24 4.74 3.62 41.13 0.15 4.89 16 8 H 0.13 1.76 7.64 -2.38 -0.02 1.74 16 9 N -1.03 -27.21 3.63 -530.18 -1.92 -29.13 16 10 S 2.65 98.12 5.67 -56.49 -0.32 97.80 16 11 O -0.99 -40.74 18.07 -127.65 -2.31 -43.04 16 12 O -0.99 -42.10 18.07 -127.65 -2.31 -44.40 16 13 C -0.60 -24.22 6.08 71.98 0.44 -23.79 16 14 C -0.10 -4.81 5.16 30.59 0.16 -4.65 16 15 C 0.04 2.27 4.97 29.85 0.15 2.42 16 16 C -0.55 -33.81 9.11 25.60 0.23 -33.58 16 17 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 18 C 0.00 0.17 5.46 84.65 0.46 0.63 16 19 N -0.93 -58.36 13.29 21.45 0.28 -58.07 16 20 Si 0.97 46.27 29.54 68.60 2.03 48.30 16 21 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 24 C 0.12 2.10 7.83 83.18 0.65 2.75 16 25 C -0.07 -0.99 1.44 -51.76 -0.07 -1.06 16 26 C -0.12 -2.34 7.89 71.98 0.57 -1.77 16 27 C -0.13 -0.78 9.25 71.98 0.67 -0.12 16 28 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.11 0.24 8.14 -2.38 -0.02 0.23 16 30 H 0.11 0.27 7.58 -2.39 -0.02 0.25 16 31 H 0.21 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.17 4.63 8.06 -2.91 -0.02 4.60 16 33 H 0.16 6.43 5.57 -2.39 -0.01 6.42 16 34 H 0.13 4.85 8.14 -2.39 -0.02 4.83 16 35 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.09 1.45 8.12 -2.39 -0.02 1.43 16 41 H 0.12 1.31 8.03 -2.39 -0.02 1.29 16 42 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.05 1.04 7.77 -2.39 -0.02 1.02 16 44 H 0.04 1.14 7.53 -2.39 -0.02 1.12 16 45 H 0.08 0.20 8.04 -2.39 -0.02 0.18 16 46 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 47 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -88.77 395.22 0.86 -87.91 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.94 Total: 16.21 kcal Atomic # 6 Polarization: -55.38 SS G_CDS: 7.57 Total: -47.81 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -4.75 Total: -114.96 kcal Atomic # 8 Polarization: -82.83 SS G_CDS: -4.61 Total: -87.45 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 16 Polarization: 98.12 SS G_CDS: -0.32 Total: 97.80 kcal Total: -88.77 0.86 -87.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309513204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.647 kcal (2) G-P(sol) polarization free energy of solvation -88.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds