Wall clock time and date at job start Sat Apr 11 2020 06:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30178 * 126.80253 * 2 1 4 4 O 1.20919 * 111.60590 * 180.02562 * 3 2 1 5 5 C 1.34048 * 111.56550 * 359.75834 * 4 3 2 6 6 C 1.50703 * 126.77288 * 180.28952 * 5 4 3 7 7 C 1.35449 * 106.44387 * 0.38547 * 5 4 3 8 8 C 1.50704 * 128.00237 * 179.91092 * 7 5 4 9 9 N 1.46902 * 109.46836 * 269.67665 * 8 7 5 10 10 C 1.46903 * 111.00007 * 180.02562 * 9 8 7 11 11 C 1.52992 * 109.47301 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47159 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.46427 * 55.00086 * 12 11 10 14 14 C 1.53001 * 109.47065 * 174.99654 * 12 11 10 15 15 N 1.46497 * 109.47036 * 294.99799 * 12 11 10 16 16 C 1.34777 * 119.99525 * 154.99621 * 15 12 11 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 12 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 12 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47157 * 59.99781 * 24 22 20 26 26 H 1.48496 * 109.47271 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46802 * 300.00045 * 24 22 20 28 28 H 1.08999 * 109.46935 * 269.96782 * 1 2 3 29 29 H 1.08993 * 109.47005 * 29.97404 * 1 2 3 30 30 H 1.08997 * 109.46828 * 149.97283 * 1 2 3 31 31 H 1.09000 * 109.46828 * 270.11016 * 6 5 4 32 32 H 1.08997 * 109.47516 * 30.11190 * 6 5 4 33 33 H 1.09005 * 109.46876 * 150.11861 * 6 5 4 34 34 H 1.08997 * 109.47171 * 149.67950 * 8 7 5 35 35 H 1.08999 * 109.47181 * 29.67662 * 8 7 5 36 36 H 1.00901 * 111.00406 * 303.95335 * 9 8 7 37 37 H 1.08994 * 109.47146 * 59.99493 * 10 9 8 38 38 H 1.09008 * 109.46497 * 300.00104 * 10 9 8 39 39 H 1.09002 * 109.47208 * 60.00104 * 11 10 9 40 40 H 1.09003 * 109.47291 * 299.99940 * 11 10 9 41 41 H 1.08998 * 109.46617 * 180.02562 * 14 12 11 42 42 H 1.09003 * 109.47371 * 300.00160 * 14 12 11 43 43 H 1.09002 * 109.46839 * 60.00194 * 14 12 11 44 44 H 0.97000 * 120.00580 * 335.00367 * 15 12 11 45 45 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 46 46 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 47 47 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6025 -0.6068 0.0043 6 6 4.9022 -1.3695 0.0114 7 6 2.3539 -1.1320 -0.0006 8 6 1.9591 -2.5864 0.0000 9 7 1.8297 -3.0591 -1.3849 10 6 1.4443 -4.4762 -1.4236 11 6 1.3203 -4.9314 -2.8790 12 6 0.9195 -6.4075 -2.9193 13 1 0.0080 -6.5523 -2.3393 14 6 0.6740 -6.8298 -4.3692 15 7 1.9958 -7.2214 -2.3491 16 6 1.7180 -8.4272 -1.8149 17 8 0.5771 -8.8386 -1.8067 18 6 2.8261 -9.2672 -1.2339 19 16 2.1405 -10.8208 -0.6075 20 6 3.6103 -11.5831 -0.0050 21 1 4.5581 -11.0727 -0.0922 22 6 3.5501 -12.8391 0.5828 23 7 2.3947 -13.4605 0.6905 24 14 5.1082 -13.6469 1.2221 25 1 5.7162 -12.7890 2.2707 26 1 4.7765 -14.9740 1.8000 27 1 6.0706 -13.8197 0.1045 28 1 -0.3633 -0.0006 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 5.2202 -1.5550 -1.0145 32 1 5.6637 -0.7850 0.5278 33 1 4.7628 -2.3203 0.5261 34 1 1.0054 -2.7038 0.5145 35 1 2.7232 -3.1702 0.5132 36 1 1.1736 -2.4921 -1.9008 37 1 0.4870 -4.6063 -0.9190 38 1 2.2046 -5.0733 -0.9200 39 1 2.2779 -4.8014 -3.3832 40 1 0.5602 -4.3343 -3.3830 41 1 0.3881 -7.8813 -4.3978 42 1 -0.1268 -6.2242 -4.7935 43 1 1.5855 -6.6849 -4.9492 44 1 2.9083 -6.8926 -2.3559 45 1 3.5636 -9.4814 -2.0075 46 1 3.3030 -8.7252 -0.4173 47 1 2.3525 -14.3384 1.1009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320348341.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:27 Heat of formation + Delta-G solvation = 3.723618 kcal Electronic energy + Delta-G solvation = -26333.388029 eV Core-core repulsion = 22452.081104 eV Total energy + Delta-G solvation = -3881.306925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.24503 -39.48191 -37.59687 -36.04187 -34.59156 -33.74171 -32.43859 -31.78838 -29.77261 -29.05622 -28.51098 -27.92960 -25.75353 -25.48457 -22.80505 -21.90904 -21.27048 -20.49415 -20.30941 -17.99821 -17.85262 -17.26377 -16.68636 -16.19229 -16.06619 -15.26250 -14.91402 -14.82298 -14.81101 -14.36509 -14.04058 -13.96299 -13.86495 -13.54893 -13.43282 -13.32147 -13.20716 -13.04223 -12.87044 -12.65258 -12.60098 -12.38659 -12.06886 -11.92273 -11.46233 -11.35872 -11.25511 -11.05562 -11.04929 -10.94588 -10.77274 -10.24186 -9.83187 -9.54607 -9.37836 -9.07331 -8.90797 -8.83877 -8.24862 -6.50989 -6.22530 -3.93149 1.12338 1.80304 2.76584 3.03683 3.10173 3.22476 3.26852 3.30760 3.72415 3.73508 3.86444 4.07670 4.19712 4.42209 4.54380 4.69989 4.79861 4.81890 4.87650 5.01717 5.04170 5.06554 5.12478 5.13777 5.17953 5.26658 5.29485 5.33165 5.36223 5.39296 5.47904 5.58310 5.59445 5.64341 5.70261 5.77853 5.78940 5.88203 6.05844 6.13178 6.20713 6.54006 6.68979 6.92042 7.58196 7.73227 7.94843 8.33953 8.62881 9.22643 10.84779 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.001935 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.370180 B =14464.840022 C =15838.642314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.024 3.976 3 N -0.369 5.369 4 O 0.094 5.906 5 C -0.008 4.008 6 C -0.073 4.073 7 C -0.203 4.203 8 C 0.137 3.863 9 N -0.684 5.684 10 C 0.056 3.944 11 C -0.122 4.122 12 C 0.145 3.855 13 H 0.086 0.914 14 C -0.163 4.163 15 N -0.734 5.734 16 C 0.532 3.468 17 O -0.518 6.518 18 C -0.154 4.154 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.340 0.660 37 H 0.034 0.966 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.397 0.603 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.834 26.852 -4.835 27.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 N -0.076 5.076 4 O 0.030 5.970 5 C -0.072 4.072 6 C -0.130 4.130 7 C -0.208 4.208 8 C 0.008 3.992 9 N -0.315 5.315 10 C -0.072 4.072 11 C -0.160 4.160 12 C 0.039 3.961 13 H 0.104 0.896 14 C -0.221 4.221 15 N -0.388 5.388 16 C 0.319 3.681 17 O -0.393 6.393 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.158 0.842 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.231 0.769 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.725 27.184 -4.816 27.616 hybrid contribution 1.737 -0.580 0.649 1.943 sum 1.012 26.604 -4.167 26.947 Atomic orbital electron populations 1.20159 0.86082 1.03667 1.03449 1.23471 0.98845 0.88642 1.02623 1.73849 0.89303 1.23927 1.20473 1.84808 1.21614 1.22696 1.67892 1.24327 0.98414 0.83517 1.00971 1.20363 0.89691 0.98480 1.04481 1.20800 0.91739 0.96966 1.11262 1.20078 1.00705 0.88034 0.90353 1.60528 1.54852 1.03522 1.12633 1.22025 0.99815 0.88253 0.97156 1.21845 1.03028 0.94769 0.96406 1.20840 0.91742 0.88832 0.94695 0.89562 1.22170 1.01553 1.02713 0.95708 1.46125 1.10967 1.19156 1.62597 1.20299 0.90169 0.80817 0.76859 1.90697 1.22140 1.70522 1.55904 1.23535 1.00263 1.03247 1.03393 1.85390 1.13127 1.09089 1.75790 1.22825 0.94393 1.05641 1.45553 0.90999 1.24994 0.97173 0.96127 0.95308 1.70009 1.24179 1.14492 1.41614 0.86227 0.81865 0.78348 0.79080 1.19950 1.20824 1.19932 0.90105 0.90401 0.90328 0.88943 0.90021 0.88904 0.93667 0.89475 0.84238 0.94758 0.90259 0.90418 0.90700 0.91639 0.92028 0.92535 0.76868 0.89283 0.89348 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.39 36.01 0.37 -0.10 16 2 C 0.02 0.22 7.33 -82.10 -0.60 -0.39 16 3 N -0.37 -4.06 12.07 33.42 0.40 -3.66 16 4 O 0.09 0.95 11.20 17.16 0.19 1.14 16 5 C -0.01 -0.06 7.49 -35.30 -0.26 -0.33 16 6 C -0.07 -0.36 10.30 36.01 0.37 0.01 16 7 C -0.20 -1.68 5.83 -104.42 -0.61 -2.29 16 8 C 0.14 0.98 6.01 -4.97 -0.03 0.95 16 9 N -0.68 -4.81 6.49 -115.06 -0.75 -5.56 16 10 C 0.06 0.43 5.57 -3.83 -0.02 0.41 16 11 C -0.12 -0.90 5.01 -26.73 -0.13 -1.03 16 12 C 0.14 1.52 2.57 -67.93 -0.17 1.34 16 13 H 0.09 1.09 7.58 -51.93 -0.39 0.69 16 14 C -0.16 -1.68 9.48 37.16 0.35 -1.33 16 15 N -0.73 -8.95 4.53 -53.80 -0.24 -9.19 16 16 C 0.53 9.43 7.81 -10.98 -0.09 9.35 16 17 O -0.52 -11.33 15.53 5.55 0.09 -11.24 16 18 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16 21 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 24 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.40 7.44 -51.93 -0.39 0.01 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 0.60 7.44 -51.93 -0.39 0.22 16 36 H 0.34 2.23 8.72 -39.29 -0.34 1.88 16 37 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.68 7.75 -51.92 -0.40 0.28 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.40 3.80 8.60 -40.82 -0.35 3.45 16 45 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 46 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 47 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 411.07 15.07 6.19 6.19 Total: -1.00 -35.00 411.07 -8.74 -43.75 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.73 Total: 0.46 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.40 Total: -8.98 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.15 Total: -43.64 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.28 Total: -10.11 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.00 -8.74 -43.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320348341.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.471 kcal (2) G-P(sol) polarization free energy of solvation -35.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds