Wall clock time and date at job start Sat Apr 11 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99573 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99431 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99772 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 N 1.46491 * 109.46957 * 179.72354 * 12 10 9 14 14 C 1.34780 * 120.00091 * 179.97438 * 13 12 10 15 15 O 1.21287 * 119.99882 * 359.97438 * 14 13 12 16 16 C 1.50693 * 120.00288 * 179.97438 * 14 13 12 17 17 C 1.53126 * 109.52424 * 299.87270 * 16 14 13 18 18 C 1.53041 * 109.27775 * 182.50327 * 17 16 14 19 19 N 1.46850 * 109.57446 * 59.08584 * 18 17 16 20 20 C 1.46898 * 111.00067 * 174.19057 * 19 18 17 21 21 H 1.09001 * 108.84909 * 64.90808 * 20 19 18 22 22 C 1.52935 * 108.88826 * 306.33641 * 20 19 18 23 23 C 1.55004 * 109.04335 * 208.99436 * 22 20 19 24 24 S 1.83993 * 100.82061 * 41.60295 * 23 22 20 25 25 C 1.53709 * 108.89000 * 183.48411 * 20 19 18 26 26 C 1.46854 * 111.19823 * 298.28896 * 19 18 17 27 27 C 1.53042 * 109.52287 * 61.74054 * 26 19 18 28 28 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 31 31 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 32 32 H 0.97003 * 120.00560 * 359.97438 * 13 12 10 33 33 H 1.08999 * 109.52870 * 59.99595 * 16 14 13 34 34 H 1.09005 * 109.49964 * 302.38270 * 17 16 14 35 35 H 1.08999 * 109.50201 * 62.49293 * 17 16 14 36 36 H 1.08997 * 109.41199 * 299.06657 * 18 17 16 37 37 H 1.08999 * 109.45097 * 179.12480 * 18 17 16 38 38 H 1.09004 * 109.60488 * 329.03284 * 22 20 19 39 39 H 1.09003 * 109.60951 * 89.17120 * 22 20 19 40 40 H 1.09005 * 111.22983 * 283.69861 * 23 22 20 41 41 H 1.08998 * 111.11360 * 159.45874 * 23 22 20 42 42 H 1.08996 * 110.33957 * 242.49449 * 25 20 19 43 43 H 1.08998 * 110.33778 * 4.74958 * 25 20 19 44 44 H 1.09005 * 109.45896 * 301.72931 * 26 19 18 45 45 H 1.08996 * 109.45214 * 181.75273 * 26 19 18 46 46 H 1.08989 * 109.50224 * 180.88350 * 27 26 19 47 47 H 1.09004 * 109.50035 * 60.76195 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 7 2.1958 -5.9764 -0.0088 14 6 1.7467 -7.2471 -0.0142 15 8 0.5542 -7.4688 -0.0152 16 6 2.7259 -8.3925 -0.0191 17 6 3.6048 -8.3090 -1.2702 18 6 4.5546 -9.5087 -1.3014 19 7 3.7752 -10.7532 -1.3095 20 6 4.6500 -11.9212 -1.4780 21 1 5.3013 -12.0018 -0.6078 22 6 5.5124 -11.7180 -2.7246 23 6 5.8591 -13.1019 -3.3307 24 16 4.2448 -13.9681 -3.1598 25 6 3.7804 -13.1855 -1.5676 26 6 2.9600 -10.8772 -0.0943 27 6 1.9616 -9.7192 -0.0279 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6165 -4.9246 0.8846 31 1 0.6178 -4.9168 -0.8953 32 1 3.1496 -5.7992 -0.0077 33 1 3.3531 -8.3393 0.8708 34 1 2.9744 -8.3219 -2.1593 35 1 4.1837 -7.3857 -1.2473 36 1 5.1949 -9.4868 -0.4195 37 1 5.1710 -9.4603 -2.1990 38 1 4.9639 -11.1245 -3.4560 39 1 6.4320 -11.1998 -2.4527 40 1 6.6366 -13.6021 -2.7533 41 1 6.1472 -13.0107 -4.3780 42 1 4.0005 -13.8563 -0.7372 43 1 2.7235 -12.9189 -1.5705 44 1 3.6077 -10.8489 0.7819 45 1 2.4185 -11.8229 -0.1154 46 1 1.3674 -9.8028 0.8820 47 1 1.3046 -9.7549 -0.8969 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327098581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:30 Heat of formation + Delta-G solvation = -77.295840 kcal Electronic energy + Delta-G solvation = -27204.205073 eV Core-core repulsion = 23319.384881 eV Total energy + Delta-G solvation = -3884.820192 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.41702 -39.17647 -38.13504 -35.90202 -34.49649 -33.72082 -32.48057 -31.40157 -31.32574 -29.48377 -27.79821 -25.87971 -24.76782 -23.89743 -22.88167 -21.03166 -20.30184 -19.80637 -19.49759 -18.16133 -17.55395 -17.03654 -16.86685 -15.79470 -15.44585 -15.41286 -15.30634 -14.90228 -14.71106 -14.56037 -14.35386 -14.11187 -13.94514 -13.61295 -13.47877 -13.35916 -12.97370 -12.68246 -12.35546 -12.23207 -12.16109 -11.97183 -11.87465 -11.65709 -11.52466 -11.45093 -11.36033 -11.14716 -10.83890 -10.63370 -10.48280 -10.34579 -10.31765 -9.66325 -9.59969 -8.81048 -8.72399 -8.66222 -8.12909 -8.04891 -6.53964 -3.96198 1.45007 1.91953 2.79990 3.09639 3.19863 3.24119 3.33639 3.36420 3.71175 4.03182 4.08958 4.28834 4.44635 4.48553 4.57304 4.61297 4.67150 4.79806 4.85223 4.93395 5.01208 5.04580 5.08470 5.11925 5.14529 5.22783 5.27998 5.29215 5.36602 5.48545 5.53872 5.59081 5.69683 5.81511 5.91680 5.94021 5.99446 6.04818 6.18693 6.65163 6.67143 6.68378 7.43426 7.79004 7.89314 8.40658 8.44997 9.01865 9.36515 9.84194 10.62842 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027863 B = 0.001766 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.662461 B =15846.815000 C =16461.097455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.108 3.892 13 N -0.707 5.707 14 C 0.516 3.484 15 O -0.548 6.548 16 C -0.106 4.106 17 C -0.109 4.109 18 C 0.055 3.945 19 N -0.529 5.529 20 C 0.082 3.918 21 H 0.049 0.951 22 C -0.124 4.124 23 C -0.067 4.067 24 S -0.290 6.290 25 C -0.066 4.066 26 C 0.052 3.948 27 C -0.094 4.094 28 H 0.274 0.726 29 H 0.396 0.604 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.410 0.590 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.113 0.887 44 H 0.036 0.964 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.444 -24.763 -2.343 26.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.213 3.787 11 O -0.485 6.485 12 C -0.020 4.020 13 N -0.361 5.361 14 C 0.301 3.699 15 O -0.426 6.426 16 C -0.127 4.127 17 C -0.147 4.147 18 C -0.073 4.073 19 N -0.255 5.255 20 C -0.027 4.027 21 H 0.067 0.933 22 C -0.163 4.163 23 C -0.216 4.216 24 S -0.065 6.065 25 C -0.215 4.215 26 C -0.076 4.076 27 C -0.132 4.132 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.248 0.752 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.126 0.874 42 H 0.107 0.893 43 H 0.131 0.869 44 H 0.054 0.946 45 H 0.099 0.901 46 H 0.094 0.906 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.358 -25.502 -3.425 27.054 hybrid contribution 1.299 1.832 1.490 2.696 sum 9.658 -23.670 -1.934 25.637 Atomic orbital electron populations 1.69613 1.06012 1.28560 1.49219 1.25333 0.95676 0.99960 0.96763 0.85807 0.79210 0.80472 0.78502 1.20247 1.20781 1.19332 1.19726 0.93455 0.82002 1.48320 0.87679 1.41805 1.09497 1.04499 1.62527 1.19752 0.88289 0.85009 0.85620 1.90489 1.13718 1.86847 1.57476 1.20950 0.91956 0.85872 1.03186 1.45746 1.11506 1.04719 1.74088 1.20500 0.89527 0.83714 0.76130 1.90686 1.16839 1.84891 1.50184 1.21359 0.96935 0.94080 1.00373 1.21608 0.97732 0.97774 0.97618 1.22158 0.94985 0.88835 1.01296 1.62121 1.23822 1.01158 1.38384 1.22085 0.92584 0.90052 0.98013 0.93318 1.22490 0.99785 0.96747 0.97290 1.24276 0.95814 0.96435 1.05067 1.87945 1.25402 1.61596 1.31561 1.24099 1.04409 0.96874 0.96069 1.22233 0.95672 0.99699 0.90005 1.21384 0.96966 0.90887 1.03987 0.91561 0.77028 0.89940 0.89877 0.75208 0.88888 0.90192 0.90313 0.94471 0.89877 0.88729 0.90117 0.89213 0.87393 0.89299 0.86915 0.94623 0.90103 0.90601 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.72 13.05 55.50 0.72 -22.99 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.36 29.55 -169.99 -5.02 15.33 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.31 -8.23 9.68 -14.93 -0.14 -8.38 16 8 H 0.11 2.94 7.16 -52.49 -0.38 2.57 16 9 N -0.55 -13.48 5.29 -10.96 -0.06 -13.54 16 10 C 0.43 9.66 7.85 -10.98 -0.09 9.58 16 11 O -0.60 -15.02 15.24 5.55 0.08 -14.93 16 12 C 0.11 1.96 6.15 -5.20 -0.03 1.93 16 13 N -0.71 -11.31 5.43 -61.48 -0.33 -11.64 16 14 C 0.52 7.71 7.16 -10.99 -0.08 7.63 16 15 O -0.55 -9.97 15.98 5.55 0.09 -9.88 16 16 C -0.11 -1.14 2.59 -91.65 -0.24 -1.38 16 17 C -0.11 -1.04 5.26 -26.64 -0.14 -1.18 16 18 C 0.05 0.42 5.15 -3.83 -0.02 0.40 16 19 N -0.53 -4.15 4.39 -226.28 -0.99 -5.14 16 20 C 0.08 0.54 2.48 -67.38 -0.17 0.38 16 21 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 22 C -0.12 -0.73 4.39 -25.71 -0.11 -0.84 16 23 C -0.07 -0.39 7.52 38.22 0.29 -0.10 16 24 S -0.29 -2.48 23.22 -107.50 -2.50 -4.98 16 25 C -0.07 -0.46 6.24 37.53 0.23 -0.23 16 26 C 0.05 0.40 5.17 -3.83 -0.02 0.38 16 27 C -0.09 -0.95 4.68 -26.65 -0.12 -1.07 16 28 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.40 9.38 7.90 -40.82 -0.32 9.06 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.41 6.39 6.91 -40.82 -0.28 6.11 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.74 7.65 -51.93 -0.40 0.34 16 36 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 0.57 6.27 -51.93 -0.33 0.24 16 38 H 0.09 0.67 7.61 -51.93 -0.39 0.27 16 39 H 0.08 0.37 7.91 -51.93 -0.41 -0.04 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.11 0.86 6.51 -51.93 -0.34 0.52 16 44 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 0.56 6.15 -51.93 -0.32 0.24 16 46 H 0.08 0.79 8.14 -51.94 -0.42 0.36 16 47 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 LS Contribution 383.29 15.07 5.78 5.78 Total: -1.00 -31.09 383.29 -10.34 -41.43 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -7.37 Total: 12.88 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -0.74 Total: 7.69 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.66 Total: -53.32 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: 0.17 Total: -24.81 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: -2.48 SS G_CDS: -2.50 Total: -4.98 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.09 -10.34 -41.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327098581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.869 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds