Wall clock time and date at job start Sat Apr 11 2020 06:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30255 * 125.62462 * 2 1 4 4 C 1.34473 * 108.70215 * 179.77887 * 3 2 1 5 5 C 1.50697 * 126.16946 * 180.26806 * 4 3 2 6 6 N 1.46907 * 109.47051 * 270.14717 * 5 4 3 7 7 C 1.46900 * 110.99902 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47031 * 325.00151 * 7 6 5 9 9 C 1.53005 * 109.47130 * 84.99956 * 7 6 5 10 10 C 1.52995 * 109.47089 * 204.99745 * 7 6 5 11 11 H 1.09002 * 109.47516 * 300.00110 * 10 7 6 12 12 C 1.53005 * 109.47131 * 60.00463 * 10 7 6 13 13 N 1.46498 * 109.47227 * 179.97438 * 10 7 6 14 14 C 1.34785 * 120.00210 * 155.00155 * 13 10 7 15 15 O 1.21280 * 119.99406 * 359.97438 * 14 13 10 16 16 C 1.50693 * 120.00170 * 180.02562 * 14 13 10 17 17 S 1.80996 * 109.47293 * 180.02562 * 16 14 13 18 18 C 1.76194 * 100.00290 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00153 * 359.97438 * 18 17 16 20 20 C 1.38803 * 120.00015 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00141 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99783 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47346 * 90.00360 * 22 20 18 24 24 H 1.48506 * 109.47115 * 210.00323 * 22 20 18 25 25 H 1.48499 * 109.47276 * 330.00024 * 22 20 18 26 26 C 1.34329 * 107.66933 * 0.39181 * 4 3 2 27 27 C 1.50706 * 126.44652 * 179.87869 * 26 4 3 28 28 O 1.33970 * 125.61641 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47563 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46792 * 300.00372 * 1 2 3 31 31 H 1.08999 * 109.47065 * 59.99821 * 1 2 3 32 32 H 1.09001 * 109.47206 * 30.13893 * 5 4 3 33 33 H 1.08998 * 109.47913 * 150.14635 * 5 4 3 34 34 H 1.00897 * 110.99945 * 303.94863 * 6 5 4 35 35 H 1.09005 * 109.46853 * 300.00081 * 9 7 6 36 36 H 1.08994 * 109.47189 * 59.99873 * 9 7 6 37 37 H 1.08993 * 109.47164 * 179.97438 * 9 7 6 38 38 H 1.08994 * 109.47394 * 59.99765 * 12 10 7 39 39 H 1.09001 * 109.47114 * 180.02562 * 12 10 7 40 40 H 1.09003 * 109.46628 * 299.99943 * 12 10 7 41 41 H 0.97006 * 120.00278 * 335.00414 * 13 10 7 42 42 H 1.09002 * 109.47022 * 299.99834 * 16 14 13 43 43 H 1.09004 * 109.47362 * 59.99555 * 16 14 13 44 44 H 0.97001 * 120.00353 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.47411 * 179.70979 * 27 26 4 46 46 H 1.08998 * 109.46596 * 299.70918 * 27 26 4 47 47 H 1.09004 * 109.46950 * 59.70738 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 0.0049 5 6 4.7571 1.5724 0.0124 6 7 5.1528 1.8724 -1.3703 7 6 6.3267 2.7549 -1.4022 8 1 6.2782 3.4543 -0.5676 9 6 7.6001 1.9141 -1.2897 10 6 6.3441 3.5330 -2.7194 11 1 6.3925 2.8336 -3.5540 12 6 5.0707 4.3739 -2.8319 13 7 7.5144 4.4136 -2.7510 14 6 8.0318 4.8048 -3.9325 15 8 7.5286 4.4274 -4.9695 16 6 9.2360 5.7101 -3.9651 17 16 9.6867 6.0532 -5.6841 18 6 11.0813 7.1000 -5.4318 19 1 11.4026 7.3391 -4.4288 20 6 11.7671 7.6173 -6.5221 21 7 11.3753 7.3263 -7.7445 22 14 13.2453 8.7276 -6.2545 23 1 14.4781 7.9027 -6.1856 24 1 13.3542 9.6873 -7.3826 25 1 13.0786 9.4758 -4.9826 26 6 3.5697 -0.6758 -0.0008 27 6 4.7936 -1.5552 -0.0008 28 8 2.2872 -1.0891 -0.0005 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 4.5116 2.5000 0.5293 33 1 5.5807 1.0769 0.5265 34 1 5.3234 1.0243 -1.8896 35 1 7.5876 1.3597 -0.3513 36 1 7.6485 1.2147 -2.1243 37 1 8.4711 2.5688 -1.3139 38 1 5.0223 5.0733 -1.9973 39 1 5.0829 4.9279 -3.7705 40 1 4.1997 3.7190 -2.8081 41 1 7.9171 4.7151 -1.9216 42 1 9.0009 6.6458 -3.4578 43 1 10.0705 5.2231 -3.4605 44 1 11.8548 7.6875 -8.5064 45 1 4.4891 -2.6017 -0.0010 46 1 5.3885 -1.3497 -0.8908 47 1 5.3885 -1.3500 0.8892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328986633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:42 Heat of formation + Delta-G solvation = -25.582130 kcal Electronic energy + Delta-G solvation = -26560.329602 eV Core-core repulsion = 22677.751884 eV Total energy + Delta-G solvation = -3882.577718 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.69551 -39.55474 -37.82510 -35.58178 -34.48147 -33.39594 -32.41164 -31.08715 -30.56713 -29.85946 -28.41362 -26.80637 -25.46383 -24.68740 -23.47485 -22.09053 -21.02038 -20.79818 -20.19246 -17.85317 -17.27405 -17.09837 -16.41104 -16.19050 -15.54362 -15.16191 -14.85369 -14.80111 -14.75956 -14.28492 -14.06948 -13.95033 -13.81528 -13.65851 -13.31503 -13.21709 -13.11040 -13.03940 -12.85364 -12.73392 -12.56421 -12.34513 -12.03314 -11.75675 -11.66333 -11.38411 -11.27482 -11.05137 -11.00640 -10.79375 -10.75612 -10.68244 -9.79307 -9.32217 -9.05477 -8.97480 -8.89856 -8.61328 -8.20628 -6.47436 -6.19890 -3.90059 1.04427 2.24332 2.28655 3.04899 3.16944 3.23331 3.28655 3.32546 3.56737 3.70453 4.13201 4.22248 4.28485 4.42821 4.47517 4.60333 4.76620 4.81282 4.89123 4.95099 4.98391 5.02661 5.07236 5.15180 5.18702 5.25513 5.30990 5.40767 5.45773 5.58005 5.63795 5.66877 5.69806 5.70971 5.88078 5.92805 5.94462 6.04639 6.17230 6.18472 6.46461 6.59365 6.80907 7.00248 7.43669 7.61200 7.79035 8.36894 8.69705 9.25376 10.87511 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031782 B = 0.001681 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.796448 B =16651.067065 C =16984.672163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.184 3.816 3 N -0.464 5.464 4 C -0.004 4.004 5 C 0.144 3.856 6 N -0.671 5.671 7 C 0.080 3.920 8 H 0.084 0.916 9 C -0.184 4.184 10 C 0.156 3.844 11 H 0.086 0.914 12 C -0.152 4.152 13 N -0.734 5.734 14 C 0.534 3.466 15 O -0.517 6.517 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.047 4.047 27 C -0.069 4.069 28 O -0.203 6.203 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.343 0.657 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.395 0.605 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.268 0.732 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.141 -17.908 21.474 32.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.023 4.023 3 N -0.193 5.193 4 C -0.124 4.124 5 C 0.015 3.985 6 N -0.302 5.302 7 C -0.030 4.030 8 H 0.102 0.898 9 C -0.243 4.243 10 C 0.050 3.950 11 H 0.104 0.896 12 C -0.210 4.210 13 N -0.389 5.389 14 C 0.320 3.680 15 O -0.391 6.391 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.101 4.101 27 C -0.126 4.126 28 O -0.090 6.090 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.162 0.838 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.228 0.772 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.106 0.894 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.670 -17.419 19.464 32.107 hybrid contribution 2.682 0.007 2.034 3.366 sum -15.989 -17.412 21.498 31.953 Atomic orbital electron populations 1.20241 0.81291 1.04582 1.05150 1.26257 0.96424 0.78535 1.01086 1.70326 1.01511 1.30015 1.17480 1.21274 0.93245 0.91419 1.06476 1.20115 0.90308 0.97647 0.90430 1.60326 1.36747 1.20677 1.12444 1.21771 0.88002 0.94909 0.98357 0.89806 1.22514 0.99167 1.00965 1.01656 1.20718 0.85418 0.91827 0.97013 0.89599 1.22034 0.97506 0.99941 1.01534 1.46052 1.32259 1.51958 1.08605 1.20250 0.84276 0.80385 0.83120 1.90700 1.61070 1.54922 1.32363 1.23534 0.97673 1.00831 1.08375 1.85400 1.37662 1.63360 0.96916 1.22875 1.15553 1.34497 0.95471 0.90966 1.24988 0.97774 0.96374 0.94440 1.70017 1.39528 1.42886 0.97849 0.86176 0.81540 0.79812 0.78013 1.20302 1.20753 1.19715 1.23201 0.83998 0.95086 1.07775 1.20288 0.90027 0.98445 1.03822 1.84388 1.16515 1.37914 1.70231 0.89524 0.88563 0.88399 0.89133 0.93372 0.83843 0.92728 0.92021 0.91231 0.93303 0.92513 0.90644 0.77167 0.89301 0.89374 0.92203 0.90219 0.89385 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.01 0.38 0.12 16 2 C 0.18 1.68 8.34 -12.95 -0.11 1.57 16 3 N -0.46 -5.21 11.29 -7.36 -0.08 -5.29 16 4 C 0.00 -0.04 6.62 -82.82 -0.55 -0.58 16 5 C 0.14 1.14 5.82 -4.97 -0.03 1.12 16 6 N -0.67 -5.77 5.47 -107.99 -0.59 -6.36 16 7 C 0.08 0.69 2.22 -67.71 -0.15 0.54 16 8 H 0.08 0.67 7.80 -51.93 -0.40 0.27 16 9 C -0.18 -1.42 9.01 37.16 0.33 -1.09 16 10 C 0.16 1.89 2.34 -67.93 -0.16 1.73 16 11 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 12 C -0.15 -1.95 9.33 37.16 0.35 -1.61 16 13 N -0.73 -9.73 4.38 -53.81 -0.24 -9.96 16 14 C 0.53 9.96 7.81 -10.98 -0.09 9.87 16 15 O -0.52 -11.81 15.52 5.56 0.09 -11.73 16 16 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 22 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 C -0.05 -0.40 7.39 -35.68 -0.26 -0.66 16 27 C -0.07 -0.33 9.96 36.01 0.36 0.03 16 28 O -0.20 -1.92 10.78 5.36 0.06 -1.86 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.10 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 33 H 0.05 0.29 7.19 -51.93 -0.37 -0.08 16 34 H 0.34 2.80 8.46 -39.29 -0.33 2.47 16 35 H 0.05 0.34 7.45 -51.93 -0.39 -0.05 16 36 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 37 H 0.07 0.58 7.45 -51.93 -0.39 0.20 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.96 7.60 -51.93 -0.39 0.56 16 41 H 0.39 4.07 8.39 -40.82 -0.34 3.72 16 42 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 43 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 408.24 15.07 6.15 6.15 Total: -1.00 -36.87 408.24 -8.25 -45.12 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.63 Total: 1.75 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 0.49 Total: -4.87 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.18 Total: -47.18 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.14 Total: -13.59 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.87 -8.25 -45.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328986633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.534 kcal (2) G-P(sol) polarization free energy of solvation -36.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds