Wall clock time and date at job start Sat Apr 11 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30255 * 125.62462 * 2 1 4 4 C 1.34473 * 108.70215 * 179.77887 * 3 2 1 5 5 C 1.50697 * 126.16946 * 180.26806 * 4 3 2 6 6 N 1.46907 * 109.47051 * 270.14717 * 5 4 3 7 7 C 1.46900 * 110.99902 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47031 * 325.00151 * 7 6 5 9 9 C 1.53005 * 109.47130 * 84.99956 * 7 6 5 10 10 C 1.52995 * 109.47089 * 204.99745 * 7 6 5 11 11 H 1.09002 * 109.47516 * 300.00110 * 10 7 6 12 12 C 1.53005 * 109.47131 * 60.00463 * 10 7 6 13 13 N 1.46498 * 109.47227 * 179.97438 * 10 7 6 14 14 C 1.34785 * 120.00210 * 155.00155 * 13 10 7 15 15 O 1.21280 * 119.99406 * 359.97438 * 14 13 10 16 16 C 1.50693 * 120.00170 * 180.02562 * 14 13 10 17 17 S 1.80996 * 109.47293 * 180.02562 * 16 14 13 18 18 C 1.76194 * 100.00290 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00153 * 359.97438 * 18 17 16 20 20 C 1.38803 * 120.00015 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00141 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99783 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47346 * 90.00360 * 22 20 18 24 24 H 1.48506 * 109.47115 * 210.00323 * 22 20 18 25 25 H 1.48499 * 109.47276 * 330.00024 * 22 20 18 26 26 C 1.34329 * 107.66933 * 0.39181 * 4 3 2 27 27 C 1.50706 * 126.44652 * 179.87869 * 26 4 3 28 28 O 1.33970 * 125.61641 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47563 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46792 * 300.00372 * 1 2 3 31 31 H 1.08999 * 109.47065 * 59.99821 * 1 2 3 32 32 H 1.09001 * 109.47206 * 30.13893 * 5 4 3 33 33 H 1.08998 * 109.47913 * 150.14635 * 5 4 3 34 34 H 1.00897 * 110.99945 * 303.94863 * 6 5 4 35 35 H 1.09005 * 109.46853 * 300.00081 * 9 7 6 36 36 H 1.08994 * 109.47189 * 59.99873 * 9 7 6 37 37 H 1.08993 * 109.47164 * 179.97438 * 9 7 6 38 38 H 1.08994 * 109.47394 * 59.99765 * 12 10 7 39 39 H 1.09001 * 109.47114 * 180.02562 * 12 10 7 40 40 H 1.09003 * 109.46628 * 299.99943 * 12 10 7 41 41 H 0.97006 * 120.00278 * 335.00414 * 13 10 7 42 42 H 1.09002 * 109.47022 * 299.99834 * 16 14 13 43 43 H 1.09004 * 109.47362 * 59.99555 * 16 14 13 44 44 H 0.97001 * 120.00353 * 180.02562 * 21 20 18 45 45 H 1.08995 * 109.47411 * 179.70979 * 27 26 4 46 46 H 1.08998 * 109.46596 * 299.70918 * 27 26 4 47 47 H 1.09004 * 109.46950 * 59.70738 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 0.0049 5 6 4.7571 1.5724 0.0124 6 7 5.1528 1.8724 -1.3703 7 6 6.3267 2.7549 -1.4022 8 1 6.2782 3.4543 -0.5676 9 6 7.6001 1.9141 -1.2897 10 6 6.3441 3.5330 -2.7194 11 1 6.3925 2.8336 -3.5540 12 6 5.0707 4.3739 -2.8319 13 7 7.5144 4.4136 -2.7510 14 6 8.0318 4.8048 -3.9325 15 8 7.5286 4.4274 -4.9695 16 6 9.2360 5.7101 -3.9651 17 16 9.6867 6.0532 -5.6841 18 6 11.0813 7.1000 -5.4318 19 1 11.4026 7.3391 -4.4288 20 6 11.7671 7.6173 -6.5221 21 7 11.3753 7.3263 -7.7445 22 14 13.2453 8.7276 -6.2545 23 1 14.4781 7.9027 -6.1856 24 1 13.3542 9.6873 -7.3826 25 1 13.0786 9.4758 -4.9826 26 6 3.5697 -0.6758 -0.0008 27 6 4.7936 -1.5552 -0.0008 28 8 2.2872 -1.0891 -0.0005 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 4.5116 2.5000 0.5293 33 1 5.5807 1.0769 0.5265 34 1 5.3234 1.0243 -1.8896 35 1 7.5876 1.3597 -0.3513 36 1 7.6485 1.2147 -2.1243 37 1 8.4711 2.5688 -1.3139 38 1 5.0223 5.0733 -1.9973 39 1 5.0829 4.9279 -3.7705 40 1 4.1997 3.7190 -2.8081 41 1 7.9171 4.7151 -1.9216 42 1 9.0009 6.6458 -3.4578 43 1 10.0705 5.2231 -3.4605 44 1 11.8548 7.6875 -8.5064 45 1 4.4891 -2.6017 -0.0010 46 1 5.3885 -1.3497 -0.8908 47 1 5.3885 -1.3500 0.8892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328986633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:41 Heat of formation + Delta-G solvation = -54.510085 kcal Electronic energy + Delta-G solvation = -26561.584012 eV Core-core repulsion = 22677.751884 eV Total energy + Delta-G solvation = -3883.832128 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.32637 -40.86291 -38.79031 -36.44347 -35.32221 -34.57652 -34.11737 -32.27511 -30.95889 -30.65158 -29.82883 -27.66087 -27.40114 -25.26360 -24.40869 -22.73528 -21.88271 -21.70226 -21.35973 -19.81949 -17.98664 -17.93672 -17.73514 -17.22196 -16.87107 -16.39228 -16.23197 -16.04305 -15.74156 -15.31494 -14.94697 -14.84859 -14.66199 -14.50718 -14.30624 -14.27235 -13.89391 -13.70844 -13.57002 -13.55398 -13.27458 -13.22235 -13.15342 -13.10393 -12.88047 -12.68377 -12.60339 -12.52726 -12.21733 -12.07979 -11.75227 -11.61386 -11.42005 -11.13429 -10.90083 -10.25631 -10.13108 -9.55226 -9.32340 -8.65378 -8.33676 -6.11607 0.43538 1.27716 1.43020 1.47220 1.55936 1.61279 1.66723 1.75244 2.25616 2.30122 3.00418 3.06422 3.30528 3.41159 3.65730 3.78156 3.81463 4.01940 4.07851 4.20260 4.24147 4.32302 4.36634 4.45933 4.50847 4.52855 4.60773 4.62326 4.64088 4.66096 4.82779 4.83748 4.88175 4.91099 4.99005 5.09370 5.12224 5.20775 5.26931 5.36675 5.37689 5.42715 5.56239 5.98584 6.20716 6.34991 6.56681 6.79897 7.07556 7.30986 8.75532 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031782 B = 0.001681 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.796448 B =16651.067065 C =16984.672163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.175 3.825 3 N -0.503 5.503 4 C -0.028 4.028 5 C 0.152 3.848 6 N -0.681 5.681 7 C 0.094 3.906 8 H 0.100 0.900 9 C -0.180 4.180 10 C 0.157 3.843 11 H 0.061 0.939 12 C -0.143 4.143 13 N -0.706 5.706 14 C 0.536 3.464 15 O -0.566 6.566 16 C -0.129 4.129 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.258 1.258 26 C -0.049 4.049 27 C -0.069 4.069 28 O -0.214 6.214 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.345 0.655 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.023 0.977 40 H 0.076 0.924 41 H 0.415 0.585 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.271 0.729 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.252 -18.261 24.500 34.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.032 4.032 3 N -0.233 5.233 4 C -0.147 4.147 5 C 0.023 3.977 6 N -0.313 5.313 7 C -0.016 4.016 8 H 0.118 0.882 9 C -0.239 4.239 10 C 0.051 3.949 11 H 0.079 0.921 12 C -0.202 4.202 13 N -0.360 5.360 14 C 0.322 3.678 15 O -0.444 6.444 16 C -0.280 4.280 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.182 1.182 26 C -0.103 4.103 27 C -0.125 4.125 28 O -0.102 6.102 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.164 0.836 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.043 0.957 40 H 0.095 0.905 41 H 0.252 0.748 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.080 0.920 45 H 0.105 0.895 46 H 0.116 0.884 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.789 -17.784 22.562 33.790 hybrid contribution 2.267 0.037 1.169 2.552 sum -15.521 -17.747 23.731 33.452 Atomic orbital electron populations 1.20457 0.78727 1.06102 1.05887 1.27086 0.97834 0.78140 1.00122 1.70309 1.02664 1.31303 1.19008 1.21588 0.93293 0.92305 1.07540 1.20096 0.90489 0.97322 0.89807 1.60214 1.36758 1.20997 1.13335 1.21584 0.88748 0.95034 0.96229 0.88199 1.22481 0.98098 1.00714 1.02600 1.20794 0.84270 0.91259 0.98540 0.92118 1.21936 0.97951 0.99949 1.00324 1.45743 1.31798 1.50710 1.07728 1.20022 0.83847 0.80082 0.83863 1.90693 1.62410 1.56855 1.34438 1.23372 0.99166 1.02407 1.03064 1.85603 1.38617 1.64047 1.04308 1.23214 1.15551 1.34483 0.96168 0.89868 1.26132 1.01167 0.97928 0.93946 1.70186 1.41278 1.44356 0.98992 0.84951 0.77083 0.77504 0.78417 1.19242 1.20377 1.18191 1.23858 0.84530 0.95410 1.06478 1.20477 0.88722 0.98185 1.05126 1.84404 1.17150 1.38274 1.70402 0.87629 0.87384 0.87904 0.89913 0.90848 0.83569 0.90308 0.92937 0.91586 0.91838 0.95734 0.90548 0.74824 0.87378 0.87062 0.92027 0.89526 0.88358 0.87587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.45 10.51 71.24 0.75 0.30 16 2 C 0.17 3.12 8.34 88.34 0.74 3.85 16 3 N -0.50 -11.16 11.29 -291.98 -3.30 -14.45 16 4 C -0.03 -0.51 6.62 41.26 0.27 -0.23 16 5 C 0.15 2.11 5.82 85.55 0.50 2.61 16 6 N -0.68 -10.63 5.47 -495.56 -2.71 -13.34 16 7 C 0.09 1.41 2.22 44.92 0.10 1.51 16 8 H 0.10 1.24 7.80 -2.39 -0.02 1.22 16 9 C -0.18 -2.27 9.01 71.98 0.65 -1.63 16 10 C 0.16 3.66 2.34 44.99 0.11 3.77 16 11 H 0.06 1.78 7.58 -2.39 -0.02 1.76 16 12 C -0.14 -3.64 9.33 71.98 0.67 -2.97 16 13 N -0.71 -17.60 4.38 -442.53 -1.94 -19.54 16 14 C 0.54 19.85 7.81 87.65 0.68 20.54 16 15 O -0.57 -26.71 15.52 -3.03 -0.05 -26.76 16 16 C -0.13 -5.09 6.16 71.23 0.44 -4.66 16 17 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 18 C -0.55 -31.31 9.50 67.96 0.65 -30.67 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.74 5.49 84.86 0.47 1.21 16 21 N -0.91 -56.38 13.22 21.65 0.29 -56.09 16 22 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 26 C -0.05 -0.77 7.39 24.79 0.18 -0.59 16 27 C -0.07 -0.49 9.96 71.24 0.71 0.21 16 28 O -0.21 -3.91 10.78 -3.74 -0.04 -3.95 16 29 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 1.28 8.05 -2.39 -0.02 1.26 16 33 H 0.07 0.63 7.19 -2.39 -0.02 0.62 16 34 H 0.35 5.17 8.46 -89.70 -0.76 4.41 16 35 H 0.08 0.65 7.45 -2.38 -0.02 0.63 16 36 H 0.05 0.78 8.13 -2.39 -0.02 0.76 16 37 H 0.07 0.90 7.45 -2.39 -0.02 0.88 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.08 1.93 7.60 -2.39 -0.02 1.92 16 41 H 0.41 7.27 8.39 -92.70 -0.78 6.49 16 42 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 43 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 44 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -83.84 408.24 -0.53 -84.37 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -0.55 Total: 20.52 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 6.91 Total: -6.75 kcal Atomic # 7 Polarization: -95.77 SS G_CDS: -7.66 Total: -103.43 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.09 Total: -30.70 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -83.84 -0.53 -84.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328986633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.857 kcal (2) G-P(sol) polarization free energy of solvation -83.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds