Wall clock time and date at job start Sat Apr 11 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32563 * 121.64287 * 2 1 4 4 S 1.77229 * 105.31633 * 180.19550 * 3 2 1 5 5 C 1.72208 * 94.84957 * 359.76142 * 4 3 2 6 6 O 1.21825 * 127.06046 * 180.02562 * 5 4 3 7 7 N 1.34244 * 105.88254 * 0.02562 * 5 4 3 8 8 C 1.46493 * 121.38223 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47400 * 90.01815 * 8 7 5 10 10 C 1.50702 * 109.47159 * 180.02562 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72352 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 H 1.09001 * 109.46948 * 35.00281 * 13 12 10 15 15 C 1.52997 * 109.47288 * 275.00460 * 13 12 10 16 16 C 1.52999 * 109.47481 * 154.99940 * 13 12 10 17 17 C 1.52999 * 109.47283 * 295.00693 * 16 13 12 18 18 C 1.53001 * 109.46946 * 179.97438 * 17 16 13 19 19 N 1.46500 * 109.46786 * 179.97438 * 18 17 16 20 20 C 1.36936 * 119.99823 * 179.97438 * 19 18 17 21 21 H 1.08006 * 120.00463 * 0.02562 * 20 19 18 22 22 C 1.38815 * 120.00354 * 180.02562 * 20 19 18 23 23 N 1.31617 * 119.99659 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00512 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46930 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47164 * 119.99762 * 24 22 20 27 27 H 1.48492 * 109.47270 * 240.00109 * 24 22 20 28 28 H 1.08997 * 109.46963 * 270.24422 * 1 2 3 29 29 H 1.08997 * 109.46882 * 30.24240 * 1 2 3 30 30 H 1.08993 * 109.46830 * 150.24305 * 1 2 3 31 31 H 1.08004 * 127.34816 * 359.93484 * 3 2 1 32 32 H 1.09004 * 109.46794 * 330.01913 * 8 7 5 33 33 H 1.09000 * 109.47559 * 210.02390 * 8 7 5 34 34 H 1.09004 * 109.47066 * 60.00265 * 9 8 7 35 35 H 1.08994 * 109.47405 * 300.00096 * 9 8 7 36 36 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 37 37 H 1.09007 * 109.47320 * 179.97438 * 15 13 12 38 38 H 1.08993 * 109.47268 * 299.99834 * 15 13 12 39 39 H 1.09006 * 109.47495 * 60.00048 * 15 13 12 40 40 H 1.09006 * 109.46798 * 55.00299 * 16 13 12 41 41 H 1.08995 * 109.47322 * 174.99759 * 16 13 12 42 42 H 1.08997 * 109.47141 * 299.99510 * 17 16 13 43 43 H 1.08998 * 109.47192 * 59.99829 * 17 16 13 44 44 H 1.08997 * 109.47150 * 299.99932 * 18 17 16 45 45 H 1.08998 * 109.46966 * 60.00118 * 18 17 16 46 46 H 0.96999 * 120.00227 * 0.02562 * 19 18 17 47 47 H 0.97001 * 120.00081 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9033 0.6303 -0.0058 5 6 3.5607 -1.0573 -0.0007 6 8 4.3673 -1.9702 -0.0016 7 7 2.2222 -1.1604 0.0044 8 6 1.5577 -2.4660 0.0092 9 6 1.3312 -2.9176 1.4534 10 6 0.6482 -4.2610 1.4583 11 8 0.3703 -4.8039 0.4100 12 7 0.3516 -4.8618 2.6277 13 6 -0.3070 -6.1705 2.6325 14 1 0.0517 -6.7608 1.7893 15 6 -1.8205 -5.9802 2.5147 16 6 0.0153 -6.8989 3.9388 17 6 1.5143 -7.1998 3.9985 18 6 1.8366 -7.9277 5.3051 19 7 3.2718 -8.2163 5.3620 20 6 3.7969 -8.8665 6.4467 21 1 3.1530 -9.1670 7.2601 22 6 5.1568 -9.1396 6.5010 23 7 5.9416 -8.7731 5.5100 24 14 5.8731 -10.0272 7.9803 25 1 4.7889 -10.3291 8.9491 26 1 6.5076 -11.2947 7.5376 27 1 6.8919 -9.1641 8.6299 28 1 -0.3633 0.0044 1.0276 29 1 -0.3633 0.8878 -0.5176 30 1 -0.3633 -0.8921 -0.5100 31 1 1.8153 2.1368 -0.0010 32 1 2.1844 -3.1945 -0.5053 33 1 0.5980 -2.3872 -0.5016 34 1 0.7046 -2.1891 1.9679 35 1 2.2908 -2.9966 1.9641 36 1 0.5740 -4.4278 3.4662 37 1 -2.3105 -6.9539 2.5178 38 1 -2.1792 -5.3899 3.3578 39 1 -2.0502 -5.4613 1.5840 40 1 -0.2628 -6.2693 4.7840 41 1 -0.5448 -7.8329 3.9817 42 1 1.7924 -7.8294 3.1533 43 1 2.0743 -6.2657 3.9556 44 1 1.5585 -7.2978 6.1501 45 1 1.2765 -8.8617 5.3484 46 1 3.8501 -7.9462 4.6317 47 1 6.8920 -8.9635 5.5480 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330836607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:43 Heat of formation + Delta-G solvation = -45.329357 kcal Electronic energy + Delta-G solvation = -26857.066184 eV Core-core repulsion = 22973.632163 eV Total energy + Delta-G solvation = -3883.434022 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42538 -39.97541 -37.87924 -36.91908 -34.87592 -33.79431 -32.65145 -31.76946 -30.98710 -29.44198 -28.47284 -25.78152 -25.30840 -23.64200 -22.95880 -21.30570 -20.81854 -20.67025 -20.46609 -18.42259 -17.89858 -17.02117 -16.81913 -16.68495 -16.16483 -15.85105 -15.25967 -14.71559 -14.66319 -14.56018 -14.21368 -14.10217 -14.09221 -13.79784 -13.64120 -13.35441 -13.16834 -12.98959 -12.79747 -12.61587 -12.26223 -12.13034 -11.80369 -11.63146 -11.47127 -11.33589 -11.20689 -10.86591 -10.81852 -10.48286 -10.42923 -10.36024 -10.13956 -9.98103 -9.85277 -9.68366 -9.20992 -8.85992 -8.29290 -6.90222 -5.74277 -3.03399 0.64365 1.02250 1.46006 1.81966 2.34314 2.42375 3.04540 3.44438 3.49338 3.52235 4.04627 4.30395 4.34116 4.50991 4.57809 4.62397 4.75449 4.83653 4.93149 4.98301 5.02087 5.08871 5.10600 5.16881 5.28057 5.37291 5.49352 5.52284 5.57692 5.58716 5.74096 5.75252 5.91210 6.00113 6.08447 6.18049 6.34342 6.37095 6.39390 6.40311 6.85666 6.89011 7.01849 7.30930 7.71478 8.01403 8.44486 9.55214 10.14215 10.48316 11.48673 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010318 B = 0.002247 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.992054 B =12455.775142 C =14658.627822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.102 3.898 3 C -0.241 4.241 4 S -0.001 6.001 5 C 0.478 3.522 6 O -0.462 6.462 7 N -0.534 5.534 8 C 0.117 3.883 9 C -0.160 4.160 10 C 0.522 3.478 11 O -0.543 6.543 12 N -0.718 5.718 13 C 0.140 3.860 14 H 0.090 0.910 15 C -0.161 4.161 16 C -0.123 4.123 17 C -0.126 4.126 18 C 0.153 3.847 19 N -0.735 5.735 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.933 5.933 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.191 0.809 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.402 0.598 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.017 0.983 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.087 23.004 -12.311 31.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.009 4.009 3 C -0.379 4.379 4 S 0.242 5.758 5 C 0.160 3.840 6 O -0.340 6.340 7 N -0.255 5.255 8 C -0.008 4.008 9 C -0.201 4.201 10 C 0.308 3.692 11 O -0.420 6.420 12 N -0.369 5.369 13 C 0.036 3.964 14 H 0.108 0.892 15 C -0.219 4.219 16 C -0.161 4.161 17 C -0.164 4.164 18 C 0.026 3.974 19 N -0.379 5.379 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.581 5.581 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.208 0.792 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.237 0.763 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.035 0.965 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.569 22.565 -12.909 30.828 hybrid contribution -0.333 -0.881 1.115 1.459 sum -16.903 21.685 -11.795 29.917 Atomic orbital electron populations 1.20824 0.86645 1.04657 1.04086 1.19457 0.95839 0.84935 1.00648 1.24903 0.93334 1.01288 1.18380 1.85277 1.08316 1.01290 1.80922 1.21657 0.83788 0.95776 0.82774 1.91035 1.48450 1.42258 1.52304 1.46157 1.06401 1.07759 1.65174 1.21619 0.99994 0.82480 0.96754 1.21989 1.03393 0.95822 0.98873 1.20208 0.78370 0.86617 0.84039 1.90721 1.53995 1.65926 1.31369 1.46093 1.61200 1.21202 1.08442 1.21078 0.92075 0.83477 0.99786 0.89241 1.22163 0.95442 1.02390 1.01940 1.21852 0.97810 1.00677 0.95775 1.21736 0.94169 1.00945 0.99540 1.20640 0.87181 0.95899 0.93719 1.42394 1.02280 1.70056 1.23169 1.19278 0.91548 1.29066 0.97247 0.91171 1.24772 0.96272 1.01887 0.98236 1.69676 1.04288 1.52253 1.31911 0.86109 0.78919 0.79091 0.82033 1.20570 1.21839 1.21843 0.89560 0.89094 0.90248 0.79171 0.87654 0.87875 0.88305 0.87831 0.76343 0.91478 0.92538 0.92375 0.91418 0.90213 0.91926 0.92107 0.96623 0.96515 0.78320 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.30 9.70 36.01 0.35 0.05 16 2 C 0.10 0.63 6.59 -82.51 -0.54 0.09 16 3 C -0.24 -1.41 11.24 28.82 0.32 -1.08 16 4 S 0.00 -0.01 22.97 -107.50 -2.47 -2.48 16 5 C 0.48 5.75 8.27 53.82 0.45 6.20 16 6 O -0.46 -7.42 17.55 5.08 0.09 -7.33 16 7 N -0.53 -4.79 2.60 -117.28 -0.31 -5.10 16 8 C 0.12 1.04 4.56 -4.05 -0.02 1.02 16 9 C -0.16 -1.33 6.02 -27.88 -0.17 -1.50 16 10 C 0.52 5.68 7.79 -10.98 -0.09 5.59 16 11 O -0.54 -7.70 15.64 5.55 0.09 -7.62 16 12 N -0.72 -7.07 4.53 -53.81 -0.24 -7.31 16 13 C 0.14 1.50 2.57 -67.93 -0.17 1.32 16 14 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 15 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16 16 C -0.12 -1.40 4.75 -26.73 -0.13 -1.52 16 17 C -0.13 -1.99 5.22 -26.73 -0.14 -2.13 16 18 C 0.15 3.09 6.26 -4.04 -0.03 3.07 16 19 N -0.73 -19.29 5.60 -59.91 -0.34 -19.62 16 20 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 21 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 23 N -0.93 -29.12 13.06 55.49 0.72 -28.40 16 24 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.11 8.10 -51.93 -0.42 -0.31 16 30 H 0.08 0.24 6.18 -51.93 -0.32 -0.08 16 31 H 0.19 0.53 8.06 -52.48 -0.42 0.10 16 32 H 0.11 1.20 7.76 -51.93 -0.40 0.80 16 33 H 0.10 0.73 6.07 -51.93 -0.32 0.42 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.40 3.24 8.60 -40.82 -0.35 2.88 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.06 0.98 7.75 -51.93 -0.40 0.57 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.38 10.65 7.67 -40.82 -0.31 10.34 16 47 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 404.26 15.07 6.09 6.09 Total: -1.00 -36.59 404.26 -8.98 -45.57 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.54 Total: 5.95 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -0.06 Total: 2.38 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -0.16 Total: -60.43 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.18 Total: -14.94 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.47 Total: -2.48 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.59 -8.98 -45.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330836607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.239 kcal (2) G-P(sol) polarization free energy of solvation -36.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds