Wall clock time and date at job start Sat Apr 11 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32563 * 121.64287 * 2 1 4 4 S 1.77229 * 105.31633 * 180.19550 * 3 2 1 5 5 C 1.72208 * 94.84957 * 359.76142 * 4 3 2 6 6 O 1.21825 * 127.06046 * 180.02562 * 5 4 3 7 7 N 1.34244 * 105.88254 * 0.02562 * 5 4 3 8 8 C 1.46493 * 121.38223 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47400 * 90.01815 * 8 7 5 10 10 C 1.50702 * 109.47159 * 180.02562 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72352 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 H 1.09001 * 109.46948 * 35.00281 * 13 12 10 15 15 C 1.52997 * 109.47288 * 275.00460 * 13 12 10 16 16 C 1.52999 * 109.47481 * 154.99940 * 13 12 10 17 17 C 1.52999 * 109.47283 * 295.00693 * 16 13 12 18 18 C 1.53001 * 109.46946 * 179.97438 * 17 16 13 19 19 N 1.46500 * 109.46786 * 179.97438 * 18 17 16 20 20 C 1.36936 * 119.99823 * 179.97438 * 19 18 17 21 21 H 1.08006 * 120.00463 * 0.02562 * 20 19 18 22 22 C 1.38815 * 120.00354 * 180.02562 * 20 19 18 23 23 N 1.31617 * 119.99659 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00512 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46930 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47164 * 119.99762 * 24 22 20 27 27 H 1.48492 * 109.47270 * 240.00109 * 24 22 20 28 28 H 1.08997 * 109.46963 * 270.24422 * 1 2 3 29 29 H 1.08997 * 109.46882 * 30.24240 * 1 2 3 30 30 H 1.08993 * 109.46830 * 150.24305 * 1 2 3 31 31 H 1.08004 * 127.34816 * 359.93484 * 3 2 1 32 32 H 1.09004 * 109.46794 * 330.01913 * 8 7 5 33 33 H 1.09000 * 109.47559 * 210.02390 * 8 7 5 34 34 H 1.09004 * 109.47066 * 60.00265 * 9 8 7 35 35 H 1.08994 * 109.47405 * 300.00096 * 9 8 7 36 36 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 37 37 H 1.09007 * 109.47320 * 179.97438 * 15 13 12 38 38 H 1.08993 * 109.47268 * 299.99834 * 15 13 12 39 39 H 1.09006 * 109.47495 * 60.00048 * 15 13 12 40 40 H 1.09006 * 109.46798 * 55.00299 * 16 13 12 41 41 H 1.08995 * 109.47322 * 174.99759 * 16 13 12 42 42 H 1.08997 * 109.47141 * 299.99510 * 17 16 13 43 43 H 1.08998 * 109.47192 * 59.99829 * 17 16 13 44 44 H 1.08997 * 109.47150 * 299.99932 * 18 17 16 45 45 H 1.08998 * 109.46966 * 60.00118 * 18 17 16 46 46 H 0.96999 * 120.00227 * 0.02562 * 19 18 17 47 47 H 0.97001 * 120.00081 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9033 0.6303 -0.0058 5 6 3.5607 -1.0573 -0.0007 6 8 4.3673 -1.9702 -0.0016 7 7 2.2222 -1.1604 0.0044 8 6 1.5577 -2.4660 0.0092 9 6 1.3312 -2.9176 1.4534 10 6 0.6482 -4.2610 1.4583 11 8 0.3703 -4.8039 0.4100 12 7 0.3516 -4.8618 2.6277 13 6 -0.3070 -6.1705 2.6325 14 1 0.0517 -6.7608 1.7893 15 6 -1.8205 -5.9802 2.5147 16 6 0.0153 -6.8989 3.9388 17 6 1.5143 -7.1998 3.9985 18 6 1.8366 -7.9277 5.3051 19 7 3.2718 -8.2163 5.3620 20 6 3.7969 -8.8665 6.4467 21 1 3.1530 -9.1670 7.2601 22 6 5.1568 -9.1396 6.5010 23 7 5.9416 -8.7731 5.5100 24 14 5.8731 -10.0272 7.9803 25 1 4.7889 -10.3291 8.9491 26 1 6.5076 -11.2947 7.5376 27 1 6.8919 -9.1641 8.6299 28 1 -0.3633 0.0044 1.0276 29 1 -0.3633 0.8878 -0.5176 30 1 -0.3633 -0.8921 -0.5100 31 1 1.8153 2.1368 -0.0010 32 1 2.1844 -3.1945 -0.5053 33 1 0.5980 -2.3872 -0.5016 34 1 0.7046 -2.1891 1.9679 35 1 2.2908 -2.9966 1.9641 36 1 0.5740 -4.4278 3.4662 37 1 -2.3105 -6.9539 2.5178 38 1 -2.1792 -5.3899 3.3578 39 1 -2.0502 -5.4613 1.5840 40 1 -0.2628 -6.2693 4.7840 41 1 -0.5448 -7.8329 3.9817 42 1 1.7924 -7.8294 3.1533 43 1 2.0743 -6.2657 3.9556 44 1 1.5585 -7.2978 6.1501 45 1 1.2765 -8.8617 5.3484 46 1 3.8501 -7.9462 4.6317 47 1 6.8920 -8.9635 5.5480 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330836607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:42 Heat of formation + Delta-G solvation = -71.083178 kcal Electronic energy + Delta-G solvation = -26858.182954 eV Core-core repulsion = 22973.632163 eV Total energy + Delta-G solvation = -3884.550791 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.15346 -40.86865 -38.74610 -38.03848 -36.55154 -34.51337 -34.18628 -32.75858 -32.01309 -30.83521 -28.99530 -27.25691 -26.10037 -24.86184 -24.22045 -22.51033 -22.03052 -21.52496 -21.22650 -19.16060 -19.07151 -18.70502 -17.62968 -17.55722 -17.04544 -16.68015 -16.63592 -16.02852 -15.86862 -15.48024 -15.34137 -15.22578 -14.99963 -14.64247 -14.56262 -14.36699 -14.30401 -13.78705 -13.73400 -13.44216 -13.22311 -13.10577 -13.00643 -12.82560 -12.43434 -12.40588 -12.28358 -12.22598 -12.06809 -12.05648 -11.88758 -11.74648 -11.50898 -11.25848 -11.01435 -10.97386 -10.60551 -10.09802 -9.04236 -8.97862 -7.98627 -5.28615 -0.14612 0.36814 0.87362 1.10550 1.44537 1.46322 1.54708 1.56543 1.65606 2.25997 2.53311 3.35225 3.48949 3.60152 3.61791 3.68446 3.89507 3.98664 4.08721 4.17319 4.27831 4.29173 4.39664 4.45093 4.56358 4.57014 4.65818 4.68436 4.79311 4.80398 4.82166 4.84151 4.92951 5.00168 5.02820 5.11814 5.31770 5.32172 5.35505 5.40659 5.47729 5.56772 5.72603 6.22567 6.23633 6.49882 7.18656 7.28748 8.06144 8.27639 9.25437 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010318 B = 0.002247 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.992054 B =12455.775142 C =14658.627822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.091 3.909 3 C -0.221 4.221 4 S -0.010 6.010 5 C 0.457 3.543 6 O -0.525 6.525 7 N -0.529 5.529 8 C 0.119 3.881 9 C -0.148 4.148 10 C 0.521 3.479 11 O -0.580 6.580 12 N -0.712 5.712 13 C 0.142 3.858 14 H 0.061 0.939 15 C -0.152 4.152 16 C -0.109 4.109 17 C -0.114 4.114 18 C 0.150 3.850 19 N -0.752 5.752 20 C -0.246 4.246 21 H 0.079 0.921 22 C -0.082 4.082 23 N -0.973 5.973 24 Si 0.978 3.022 25 H -0.262 1.262 26 H -0.293 1.293 27 H -0.292 1.292 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.077 0.923 31 H 0.230 0.770 32 H 0.069 0.931 33 H 0.125 0.875 34 H 0.137 0.863 35 H 0.088 0.912 36 H 0.413 0.587 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.042 0.958 43 H 0.055 0.945 44 H 0.027 0.973 45 H 0.020 0.980 46 H 0.370 0.630 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.297 24.962 -10.859 34.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.018 4.018 3 C -0.358 4.358 4 S 0.234 5.766 5 C 0.140 3.860 6 O -0.409 6.409 7 N -0.249 5.249 8 C -0.007 4.007 9 C -0.189 4.189 10 C 0.307 3.693 11 O -0.460 6.460 12 N -0.364 5.364 13 C 0.038 3.962 14 H 0.079 0.921 15 C -0.210 4.210 16 C -0.147 4.147 17 C -0.152 4.152 18 C 0.024 3.976 19 N -0.395 5.395 20 C -0.378 4.378 21 H 0.097 0.903 22 C -0.274 4.274 23 N -0.624 5.624 24 Si 0.806 3.194 25 H -0.186 1.186 26 H -0.221 1.221 27 H -0.219 1.219 28 H 0.121 0.879 29 H 0.134 0.866 30 H 0.096 0.904 31 H 0.247 0.753 32 H 0.088 0.912 33 H 0.143 0.857 34 H 0.155 0.845 35 H 0.107 0.893 36 H 0.250 0.750 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.045 0.955 45 H 0.038 0.962 46 H 0.201 0.799 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -19.875 24.571 -11.419 33.603 hybrid contribution 0.576 -1.404 0.635 1.645 sum -19.299 23.167 -10.784 32.023 Atomic orbital electron populations 1.20983 0.83563 1.05815 1.05507 1.20073 0.97510 0.83724 1.00462 1.25455 0.90318 1.02851 1.17206 1.85281 1.11789 0.99263 1.80307 1.22091 0.84503 0.96344 0.83028 1.90984 1.50217 1.44400 1.55291 1.46191 1.05676 1.08798 1.64237 1.21556 1.00020 0.81969 0.97123 1.21912 1.02962 0.95342 0.98648 1.20580 0.77860 0.87204 0.83649 1.90706 1.55638 1.66974 1.32692 1.46067 1.60682 1.20850 1.08757 1.20984 0.93599 0.83415 0.98249 0.92057 1.22072 0.93481 1.03179 1.02255 1.21757 0.94214 1.01810 0.96944 1.21604 0.97494 0.99640 0.96460 1.20870 0.83944 0.96589 0.96227 1.42696 1.04649 1.69938 1.22197 1.19727 0.91953 1.28196 0.97878 0.90300 1.25683 0.96877 1.03479 1.01327 1.69849 1.04247 1.54146 1.34189 0.85007 0.78219 0.77373 0.78771 1.18611 1.22060 1.21919 0.87868 0.86630 0.90379 0.75315 0.91212 0.85670 0.84515 0.89331 0.75037 0.90594 0.90637 0.93266 0.89147 0.89139 0.93876 0.92649 0.95497 0.96155 0.79864 0.94028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.18 9.70 71.24 0.69 0.51 16 2 C 0.09 0.90 6.59 40.71 0.27 1.17 16 3 C -0.22 -1.94 11.24 66.67 0.75 -1.19 16 4 S -0.01 -0.17 22.97 -56.49 -1.30 -1.47 16 5 C 0.46 11.65 8.27 129.87 1.07 12.72 16 6 O -0.53 -18.63 17.55 -4.75 -0.08 -18.71 16 7 N -0.53 -9.40 2.60 -643.44 -1.68 -11.07 16 8 C 0.12 2.16 4.56 86.38 0.39 2.55 16 9 C -0.15 -2.40 6.02 29.85 0.18 -2.22 16 10 C 0.52 11.21 7.79 87.66 0.68 11.89 16 11 O -0.58 -16.87 15.64 -3.04 -0.05 -16.92 16 12 N -0.71 -13.23 4.53 -442.54 -2.00 -15.23 16 13 C 0.14 2.87 2.57 44.99 0.12 2.99 16 14 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 15 C -0.15 -2.34 9.48 71.98 0.68 -1.66 16 16 C -0.11 -2.26 4.75 30.59 0.15 -2.11 16 17 C -0.11 -3.56 5.22 30.59 0.16 -3.40 16 18 C 0.15 5.93 6.26 86.38 0.54 6.47 16 19 N -0.75 -39.92 5.60 -343.45 -1.92 -41.84 16 20 C -0.25 -14.16 9.99 84.03 0.84 -13.32 16 21 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 22 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 23 N -0.97 -62.20 13.06 21.65 0.28 -61.92 16 24 Si 0.98 47.27 29.55 68.60 2.03 49.30 16 25 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 26 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 27 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 28 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 29 H 0.12 -0.29 8.10 -2.39 -0.02 -0.31 16 30 H 0.08 0.22 6.18 -2.39 -0.01 0.20 16 31 H 0.23 0.16 8.06 -2.91 -0.02 0.14 16 32 H 0.07 1.78 7.76 -2.38 -0.02 1.76 16 33 H 0.13 1.68 6.07 -2.39 -0.01 1.66 16 34 H 0.14 1.13 8.14 -2.38 -0.02 1.12 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.41 5.85 8.60 -92.71 -0.80 5.06 16 37 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 43 H 0.05 1.78 7.75 -2.39 -0.02 1.76 16 44 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 46 H 0.37 21.22 7.67 -92.71 -0.71 20.51 16 47 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -84.05 404.26 1.75 -82.30 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -0.52 Total: 25.57 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 6.99 Total: 10.00 kcal Atomic # 7 Polarization: -124.75 SS G_CDS: -5.32 Total: -130.07 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.13 Total: -35.62 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -1.30 Total: -1.47 kcal Total: -84.05 1.75 -82.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330836607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.219 kcal (2) G-P(sol) polarization free energy of solvation -84.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds