Wall clock time and date at job start Sat Apr 11 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99954 * 2 1 4 4 C 1.50701 * 109.47228 * 179.97438 * 3 2 1 5 5 N 1.29431 * 124.79986 * 90.01781 * 4 3 2 6 6 C 1.30944 * 117.36018 * 179.97438 * 5 4 3 7 7 C 1.50701 * 122.90454 * 180.02562 * 6 5 4 8 8 C 1.35668 * 114.19279 * 0.02562 * 6 5 4 9 9 C 1.46677 * 126.13002 * 179.97438 * 8 6 5 10 10 O 1.21682 * 120.00109 * 359.72831 * 9 8 6 11 11 N 1.34784 * 119.99881 * 179.97438 * 9 8 6 12 12 C 1.46499 * 119.99893 * 179.72848 * 11 9 8 13 13 H 1.08990 * 109.47400 * 34.99963 * 12 11 9 14 14 C 1.52998 * 109.46843 * 274.99901 * 12 11 9 15 15 C 1.52997 * 109.46833 * 155.00334 * 12 11 9 16 16 C 1.53001 * 109.47001 * 294.99594 * 15 12 11 17 17 C 1.53000 * 109.47252 * 180.02562 * 16 15 12 18 18 N 1.46501 * 109.47422 * 180.02562 * 17 16 15 19 19 C 1.36938 * 120.00262 * 180.02562 * 18 17 16 20 20 H 1.07994 * 119.99589 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99967 * 180.02562 * 19 18 17 22 22 N 1.31613 * 119.99806 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99842 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47116 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46597 * 119.99837 * 23 21 19 26 26 H 1.48493 * 109.47381 * 239.99919 * 23 21 19 27 27 S 1.70949 * 124.80630 * 270.29927 * 4 3 2 28 28 H 1.08999 * 109.46767 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46969 * 300.00042 * 1 2 3 30 30 H 1.08998 * 109.46950 * 60.00649 * 1 2 3 31 31 H 1.08996 * 109.47546 * 59.99603 * 3 2 1 32 32 H 1.09001 * 109.46904 * 299.99619 * 3 2 1 33 33 H 1.09001 * 109.47482 * 269.96312 * 7 6 5 34 34 H 1.09000 * 109.47018 * 29.96727 * 7 6 5 35 35 H 1.09000 * 109.46954 * 149.95990 * 7 6 5 36 36 H 0.97005 * 119.99846 * 359.72636 * 11 9 8 37 37 H 1.09007 * 109.47248 * 300.00110 * 14 12 11 38 38 H 1.08997 * 109.47450 * 60.00399 * 14 12 11 39 39 H 1.08998 * 109.47317 * 180.02562 * 14 12 11 40 40 H 1.08991 * 109.47642 * 54.99647 * 15 12 11 41 41 H 1.09005 * 109.47281 * 174.99715 * 15 12 11 42 42 H 1.09003 * 109.47143 * 300.00112 * 16 15 12 43 43 H 1.08991 * 109.47075 * 60.00135 * 16 15 12 44 44 H 1.09003 * 109.46744 * 299.99874 * 17 16 15 45 45 H 1.09000 * 109.47138 * 59.99996 * 17 16 15 46 46 H 0.96998 * 119.99564 * 359.97438 * 18 17 16 47 47 H 0.97009 * 120.00087 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2494 1.1283 -1.0619 6 6 5.5437 1.0263 -0.8918 7 6 6.5168 0.9501 -2.0400 8 6 5.9330 0.9952 0.4075 9 6 7.3122 0.8859 0.8947 10 8 8.2328 0.8082 0.1029 11 7 7.5593 0.8666 2.2196 12 6 8.9363 0.7514 2.7062 13 1 9.6057 1.2859 2.0323 14 6 9.3369 -0.7243 2.7586 15 6 9.0340 1.3564 4.1081 16 6 8.7546 2.8589 4.0357 17 6 8.8529 3.4641 5.4374 18 7 8.5849 4.9027 5.3682 19 6 8.6176 5.6610 6.5081 20 1 8.8407 5.1984 7.4580 21 6 8.3631 7.0240 6.4425 22 7 8.0908 7.5876 5.2847 23 14 8.4071 8.0582 7.9975 24 1 8.7348 7.1924 9.1587 25 1 9.4421 9.1143 7.8603 26 1 7.0801 8.6901 8.2094 27 16 4.4842 1.1024 1.4047 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 6.6713 -0.0928 -2.3168 34 1 6.1156 1.4969 -2.8932 35 1 7.4675 1.3912 -1.7404 36 1 6.8254 0.9289 2.8508 37 1 8.6673 -1.2589 3.4325 38 1 9.2673 -1.1554 1.7599 39 1 10.3612 -0.8101 3.1211 40 1 8.3013 0.8817 4.7606 41 1 10.0354 1.1918 4.5059 42 1 9.4874 3.3337 3.3831 43 1 7.7533 3.0236 3.6379 44 1 8.1203 2.9894 6.0903 45 1 9.8544 3.2995 5.8349 46 1 8.3849 5.3183 4.5149 47 1 7.9133 8.5402 5.2388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330972488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:51 Heat of formation + Delta-G solvation = -38.831029 kcal Electronic energy + Delta-G solvation = -26719.334599 eV Core-core repulsion = 22836.182366 eV Total energy + Delta-G solvation = -3883.152233 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.66727 -39.56996 -38.23399 -36.79750 -34.87771 -32.85111 -32.57394 -31.27645 -29.47911 -29.15971 -28.24368 -26.49529 -25.68785 -23.37573 -23.08076 -22.35507 -20.87514 -20.75301 -19.77162 -18.39731 -17.21475 -17.07495 -17.00463 -16.50809 -16.04962 -15.70443 -15.49997 -14.72965 -14.56815 -14.49880 -14.22643 -14.03077 -13.75401 -13.49705 -13.24883 -13.01588 -12.83323 -12.73570 -12.70895 -12.58201 -12.19742 -12.10128 -11.89589 -11.58055 -11.33866 -11.19740 -10.87877 -10.82641 -10.48516 -10.43417 -10.39031 -10.17901 -9.99523 -9.91497 -9.80433 -9.69719 -9.25927 -9.03065 -8.87386 -6.91604 -5.76250 -3.04982 -0.11370 0.84191 1.26461 2.09943 2.92293 2.96346 3.22264 3.42798 3.48148 3.50668 3.84902 4.40343 4.51060 4.59364 4.73194 4.74700 4.81029 4.88784 4.89381 4.95544 5.01791 5.11593 5.22328 5.39858 5.49676 5.51466 5.56280 5.57417 5.60556 5.68262 5.75251 5.92377 6.04336 6.05430 6.14991 6.19637 6.34092 6.39291 6.40101 6.50350 6.85405 6.88806 7.22213 7.36295 7.70241 7.97327 8.42715 9.53586 10.12617 10.46887 11.46775 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009306 B = 0.002534 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.027963 B =11046.612765 C =12881.823728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.137 3.863 4 C 0.053 3.947 5 N -0.459 5.459 6 C 0.147 3.853 7 C -0.089 4.089 8 C -0.295 4.295 9 C 0.600 3.400 10 O -0.522 6.522 11 N -0.715 5.715 12 C 0.142 3.858 13 H 0.093 0.907 14 C -0.163 4.163 15 C -0.124 4.124 16 C -0.126 4.126 17 C 0.153 3.847 18 N -0.735 5.735 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.292 1.292 27 S 0.197 5.803 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.398 0.602 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.017 0.983 45 H 0.018 0.982 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.413 -19.491 -11.801 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.057 3.943 4 C -0.222 4.222 5 N -0.176 5.176 6 C 0.009 3.991 7 C -0.148 4.148 8 C -0.419 4.419 9 C 0.385 3.615 10 O -0.400 6.400 11 N -0.366 5.366 12 C 0.038 3.962 13 H 0.111 0.889 14 C -0.221 4.221 15 C -0.162 4.162 16 C -0.164 4.164 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 S 0.454 5.546 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.233 0.767 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.034 0.966 45 H 0.036 0.964 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.137 -19.638 -11.540 25.354 hybrid contribution -0.235 1.052 0.236 1.103 sum -11.371 -18.586 -11.305 24.547 Atomic orbital electron populations 1.22828 0.79721 1.03418 1.00537 1.87952 1.20536 1.26104 1.95580 1.20857 0.84165 0.86243 1.03042 1.26811 1.00548 1.03115 0.91747 1.66030 1.04555 1.15676 1.31310 1.20672 0.89724 0.94958 0.93786 1.20673 0.97142 1.03488 0.93473 1.25619 0.98373 1.20478 0.97447 1.16606 0.85761 0.76408 0.82686 1.90780 1.44227 1.50153 1.54871 1.46016 1.10082 1.74474 1.06031 1.21120 0.82180 0.96464 0.96398 0.88890 1.22180 1.01801 0.95789 1.02323 1.21868 1.03232 0.96491 0.94622 1.21744 1.01916 0.93636 0.99147 1.20646 0.97326 0.86154 0.93331 1.42392 1.85058 1.02179 1.08248 1.19285 1.39862 0.90046 0.87782 0.91156 1.24757 1.02738 0.96820 0.96854 1.69676 1.54801 1.10764 1.22993 0.86115 0.77190 0.80420 0.82473 1.20557 1.21853 1.21869 1.83911 0.96250 1.63869 1.10522 0.89036 0.93475 0.93478 0.90321 0.89598 0.90095 0.90669 0.87987 0.76739 0.92474 0.92187 0.91289 0.91362 0.89968 0.91828 0.92176 0.96559 0.96439 0.78344 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.49 10.69 -35.23 -0.38 -3.87 16 3 C 0.14 1.12 6.51 36.01 0.23 1.36 16 4 C 0.05 0.58 7.01 -13.29 -0.09 0.49 16 5 N -0.46 -5.86 10.50 -7.70 -0.08 -5.94 16 6 C 0.15 1.90 6.79 -83.89 -0.57 1.33 16 7 C -0.09 -1.00 9.69 36.01 0.35 -0.66 16 8 C -0.29 -3.71 6.48 -37.10 -0.24 -3.95 16 9 C 0.60 8.05 7.74 -12.85 -0.10 7.95 16 10 O -0.52 -8.10 13.93 5.20 0.07 -8.03 16 11 N -0.71 -8.31 4.53 -55.12 -0.25 -8.56 16 12 C 0.14 1.61 2.57 -67.93 -0.17 1.44 16 13 H 0.09 1.21 7.57 -51.93 -0.39 0.82 16 14 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 15 C -0.12 -1.44 4.75 -26.73 -0.13 -1.56 16 16 C -0.13 -1.99 5.22 -26.73 -0.14 -2.13 16 17 C 0.15 3.05 6.26 -4.04 -0.03 3.02 16 18 N -0.73 -18.95 5.60 -59.91 -0.34 -19.29 16 19 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 23 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 27 S 0.20 2.02 22.31 -107.50 -2.40 -0.38 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 1.27 6.02 -51.93 -0.31 0.96 16 36 H 0.40 4.08 7.79 -40.82 -0.32 3.76 16 37 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.06 0.96 7.75 -51.93 -0.40 0.56 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.38 10.43 7.67 -40.82 -0.31 10.12 16 47 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 405.57 15.07 6.11 6.11 Total: -1.00 -34.54 405.57 -8.85 -43.39 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -7.63 Total: 7.08 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 0.33 Total: -0.15 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: 0.06 Total: -61.66 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.30 Total: -11.90 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.40 Total: -0.38 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.54 -8.85 -43.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330972488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.555 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds