Wall clock time and date at job start Sat Apr 11 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37982 * 119.50292 * 2 1 4 4 C 1.39995 * 119.17254 * 180.25113 * 3 2 1 5 5 C 1.48124 * 120.88033 * 179.75154 * 4 3 2 6 6 O 1.21536 * 119.99742 * 179.72211 * 5 4 3 7 7 N 1.34774 * 120.00385 * 359.72096 * 5 4 3 8 8 C 1.40076 * 120.00105 * 180.02562 * 7 5 4 9 9 C 1.40423 * 125.97214 * 359.97438 * 8 7 5 10 10 C 1.35237 * 107.86616 * 179.97438 * 9 8 7 11 11 N 1.34980 * 107.86291 * 0.02562 * 10 9 8 12 12 C 1.46497 * 125.96979 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46787 * 125.00183 * 12 11 10 14 14 H 1.07998 * 119.99969 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99816 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00026 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99927 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47003 * 90.00076 * 17 15 13 19 19 H 1.48497 * 109.46908 * 209.99810 * 17 15 13 20 20 H 1.48497 * 109.47129 * 330.00129 * 17 15 13 21 21 N 1.31232 * 125.97656 * 179.97438 * 8 7 5 22 22 C 1.39548 * 118.23023 * 359.47999 * 4 3 2 23 23 C 1.39070 * 118.93518 * 0.27095 * 22 4 3 24 24 N 1.39028 * 119.64208 * 179.97438 * 23 22 4 25 25 C 1.46497 * 120.00359 * 356.16955 * 24 23 22 26 26 C 1.53005 * 117.49613 * 230.00184 * 25 24 23 27 27 C 1.52998 * 117.50172 * 161.34223 * 25 24 23 28 28 N 1.31888 * 119.49845 * 179.72068 * 2 1 3 29 29 H 1.08992 * 109.47232 * 270.28183 * 1 2 3 30 30 H 1.09007 * 109.46786 * 30.27883 * 1 2 3 31 31 H 1.08991 * 109.47320 * 150.27599 * 1 2 3 32 32 H 1.08001 * 120.41609 * 0.02732 * 3 2 1 33 33 H 0.96997 * 120.00082 * 359.97438 * 7 5 4 34 34 H 1.08002 * 126.07255 * 359.97438 * 9 8 7 35 35 H 1.08002 * 126.07107 * 180.02562 * 10 9 8 36 36 H 1.08995 * 109.47094 * 244.99644 * 12 11 10 37 37 H 1.08998 * 109.47699 * 4.99888 * 12 11 10 38 38 H 0.97006 * 120.00113 * 180.02562 * 16 15 13 39 39 H 1.08007 * 120.53115 * 180.29565 * 22 4 3 40 40 H 0.97001 * 119.99680 * 176.16938 * 24 23 22 41 41 H 1.09001 * 115.54992 * 15.66869 * 25 24 23 42 42 H 1.09001 * 117.50021 * 359.97438 * 26 25 24 43 43 H 1.09001 * 117.50010 * 145.02070 * 26 25 24 44 44 H 1.08997 * 117.50099 * 214.97810 * 27 25 24 45 45 H 1.09006 * 117.49740 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1865 1.2009 0.0000 4 6 3.5865 1.1928 -0.0054 5 6 4.3540 2.4597 -0.0111 6 8 5.5691 2.4340 -0.0106 7 7 3.7050 3.6409 -0.0168 8 6 4.4309 4.8388 -0.0228 9 6 5.8303 4.9554 -0.0229 10 6 6.1369 6.2725 -0.0302 11 7 4.9796 6.9671 -0.0339 12 6 4.8519 8.4264 -0.0424 13 6 3.9958 8.8489 -1.2086 14 1 3.5881 8.1048 -1.8767 15 6 3.7332 10.1854 -1.4224 16 7 4.2293 11.0915 -0.6086 17 14 2.6727 10.7092 -2.8683 18 1 1.2490 10.7520 -2.4481 19 1 3.0937 12.0568 -3.3284 20 1 2.8322 9.7351 -3.9777 21 7 3.9221 6.0485 -0.0292 22 6 4.2395 -0.0404 0.0006 23 6 3.4787 -1.2046 0.0059 24 7 4.1141 -2.4412 0.0114 25 6 5.5748 -2.5146 -0.0732 26 6 6.1754 -3.4572 -1.1181 27 6 6.2433 -3.8182 0.3679 28 7 2.1564 -1.1479 0.0056 29 1 -0.3633 0.0051 1.0276 30 1 -0.3633 0.8875 -0.5182 31 1 -0.3633 -0.8924 -0.5095 32 1 1.6452 2.1355 0.0004 33 1 2.7352 3.6614 -0.0176 34 1 6.5364 4.1382 -0.0181 35 1 7.1314 6.6939 -0.0326 36 1 4.3878 8.7560 0.8871 37 1 5.8400 8.8772 -0.1349 38 1 4.0442 12.0318 -0.7588 39 1 5.3184 -0.0900 0.0016 40 1 3.5902 -3.2553 0.0711 41 1 6.1048 -1.5838 0.1288 42 1 5.4837 -4.0229 -1.7424 43 1 7.1008 -3.1467 -1.6033 44 1 7.2133 -3.7451 0.8597 45 1 5.5963 -4.6211 0.7214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361993021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:56 Heat of formation + Delta-G solvation = 121.163759 kcal Electronic energy + Delta-G solvation = -27703.870078 eV Core-core repulsion = 23724.504539 eV Total energy + Delta-G solvation = -3979.365538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.09279 -40.46187 -39.09775 -38.14816 -34.97780 -34.42240 -33.50168 -33.00870 -31.00573 -30.66296 -29.36722 -27.56634 -26.77862 -24.90333 -23.61467 -22.95785 -22.83253 -21.66254 -21.02525 -20.21857 -19.63805 -18.23360 -17.40676 -16.85679 -16.61049 -16.38791 -15.97441 -15.44599 -15.31946 -15.07849 -14.97893 -14.75273 -14.32427 -14.04441 -13.80065 -13.68515 -13.37242 -13.19067 -12.82464 -12.50360 -12.39258 -12.29480 -12.05485 -11.98263 -11.92702 -11.80029 -11.07333 -10.95669 -10.91156 -10.50632 -10.28246 -10.27269 -10.22113 -9.92279 -9.77137 -9.60895 -9.52223 -8.65031 -8.18061 -7.97760 -7.52019 -6.25940 -4.31067 0.54388 0.98683 2.47856 2.51309 2.69331 2.92023 3.22982 3.28817 3.33500 3.34098 3.58723 3.77044 3.82197 4.13308 4.29077 4.30095 4.38366 4.46864 4.48396 4.63252 4.80764 4.88184 5.09311 5.17164 5.17631 5.26651 5.33719 5.34475 5.45683 5.47208 5.62062 5.62546 5.73847 5.76861 5.88119 6.16547 6.19401 6.44296 6.56163 6.63470 6.82905 7.02965 7.15736 7.32183 7.50582 7.68893 7.82165 7.86135 8.00730 8.11492 8.58293 8.78005 9.34647 10.82786 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016459 B = 0.002081 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.811040 B =13452.243591 C =14575.401334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.177 3.823 3 C -0.202 4.202 4 C -0.034 4.034 5 C 0.565 3.435 6 O -0.507 6.507 7 N -0.620 5.620 8 C 0.255 3.745 9 C -0.286 4.286 10 C 0.052 3.948 11 N -0.317 5.317 12 C 0.258 3.742 13 C -0.529 4.529 14 H 0.069 0.931 15 C 0.062 3.938 16 N -0.895 5.895 17 Si 0.908 3.092 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.272 1.272 21 N -0.301 5.301 22 C -0.183 4.183 23 C 0.408 3.592 24 N -0.694 5.694 25 C 0.085 3.915 26 C -0.196 4.196 27 C -0.186 4.186 28 N -0.531 5.531 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.412 0.588 34 H 0.160 0.840 35 H 0.169 0.831 36 H 0.046 0.954 37 H 0.058 0.942 38 H 0.267 0.733 39 H 0.147 0.853 40 H 0.406 0.594 41 H 0.136 0.864 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.676 -27.568 2.318 27.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.039 3.961 3 C -0.226 4.226 4 C -0.045 4.045 5 C 0.350 3.650 6 O -0.381 6.381 7 N -0.267 5.267 8 C 0.002 3.998 9 C -0.318 4.318 10 C -0.098 4.098 11 N -0.099 5.099 12 C 0.140 3.860 13 C -0.567 4.567 14 H 0.087 0.913 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.735 3.265 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.197 1.197 21 N -0.132 5.132 22 C -0.208 4.208 23 C 0.172 3.828 24 N -0.325 5.325 25 C -0.022 4.022 26 C -0.235 4.235 27 C -0.225 4.225 28 N -0.250 5.250 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.156 0.844 33 H 0.248 0.752 34 H 0.178 0.822 35 H 0.186 0.814 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.164 0.836 40 H 0.243 0.757 41 H 0.153 0.847 42 H 0.116 0.884 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.158 -27.267 2.350 27.392 hybrid contribution -0.009 0.423 -0.737 0.850 sum -1.167 -26.843 1.613 26.917 Atomic orbital electron populations 1.20768 0.88244 1.03829 1.03434 1.20818 0.96589 0.86750 0.91919 1.21861 0.93242 0.99778 1.07671 1.19884 0.93405 0.92881 0.98341 1.18055 0.87246 0.82625 0.77055 1.90712 1.13099 1.86693 1.47598 1.42249 1.10201 1.02519 1.71767 1.19034 0.91000 0.85807 1.03929 1.21520 0.93784 0.96470 1.19977 1.22576 0.92820 0.92053 1.02328 1.49112 1.01502 1.07851 1.51395 1.19771 0.99497 0.67361 0.99350 1.21249 1.31781 0.92538 1.11156 0.91286 1.24947 0.95976 0.96091 0.97080 1.69915 1.44523 1.01533 1.37327 0.86319 0.80373 0.77805 0.81957 1.20315 1.20983 1.19719 1.77340 1.12464 0.95716 1.27685 1.21467 1.01624 0.90130 1.07588 1.18035 0.87930 0.85869 0.90929 1.43735 1.04407 1.04805 1.79568 1.21645 0.80170 0.96392 1.03997 1.23529 1.03548 1.04043 0.92380 1.23390 1.02818 0.98443 0.97819 1.66784 1.07670 1.30424 1.20141 0.90018 0.90118 0.90363 0.84381 0.75159 0.82246 0.81363 0.93641 0.92455 0.92308 0.83551 0.75723 0.84702 0.88436 0.87782 0.87603 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.16 36.01 0.37 -0.36 16 2 C 0.18 1.77 6.77 -82.66 -0.56 1.21 16 3 C -0.20 -2.09 9.23 -39.02 -0.36 -2.45 16 4 C -0.03 -0.42 5.90 -104.69 -0.62 -1.04 16 5 C 0.56 8.51 7.76 -12.20 -0.09 8.42 16 6 O -0.51 -8.84 13.56 5.33 0.07 -8.77 16 7 N -0.62 -9.75 5.40 -11.91 -0.06 -9.82 16 8 C 0.26 5.09 8.11 -154.45 -1.25 3.84 16 9 C -0.29 -5.62 9.60 -39.83 -0.38 -6.00 16 10 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 11 N -0.32 -7.28 3.67 -62.56 -0.23 -7.51 16 12 C 0.26 6.48 6.26 -5.19 -0.03 6.45 16 13 C -0.53 -14.59 9.24 -34.44 -0.32 -14.91 16 14 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 17 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 N -0.30 -6.85 12.42 31.43 0.39 -6.46 16 22 C -0.18 -2.10 8.92 -38.78 -0.35 -2.45 16 23 C 0.41 4.37 7.64 -155.06 -1.19 3.18 16 24 N -0.69 -5.69 5.75 -53.95 -0.31 -6.00 16 25 C 0.08 0.58 6.26 -67.93 -0.43 0.15 16 26 C -0.20 -1.10 10.46 -26.69 -0.28 -1.38 16 27 C -0.19 -0.94 10.45 -26.69 -0.28 -1.22 16 28 N -0.53 -5.87 10.28 -8.71 -0.09 -5.96 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.14 1.14 6.53 -52.49 -0.34 0.79 16 33 H 0.41 5.31 6.96 -40.82 -0.28 5.03 16 34 H 0.16 3.01 5.91 -52.49 -0.31 2.70 16 35 H 0.17 2.68 8.06 -52.49 -0.42 2.26 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.15 1.60 5.58 -52.48 -0.29 1.31 16 40 H 0.41 2.88 8.93 -40.82 -0.36 2.51 16 41 H 0.14 0.95 5.94 -51.93 -0.31 0.64 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 386.06 15.07 5.82 5.82 Total: -1.00 -32.88 386.06 -10.43 -43.31 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.67 Total: 7.70 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -6.06 Total: -4.13 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 0.43 Total: -60.14 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.07 Total: -8.77 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.88 -10.43 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361993021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.471 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds