Wall clock time and date at job start Sat Apr 11 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37982 * 119.50292 * 2 1 4 4 C 1.39995 * 119.17254 * 180.25113 * 3 2 1 5 5 C 1.48124 * 120.88033 * 179.75154 * 4 3 2 6 6 O 1.21536 * 119.99742 * 179.72211 * 5 4 3 7 7 N 1.34774 * 120.00385 * 359.72096 * 5 4 3 8 8 C 1.40076 * 120.00105 * 180.02562 * 7 5 4 9 9 C 1.40423 * 125.97214 * 359.97438 * 8 7 5 10 10 C 1.35237 * 107.86616 * 179.97438 * 9 8 7 11 11 N 1.34980 * 107.86291 * 0.02562 * 10 9 8 12 12 C 1.46497 * 125.96979 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46787 * 125.00183 * 12 11 10 14 14 H 1.07998 * 119.99969 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99816 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00026 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99927 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47003 * 90.00076 * 17 15 13 19 19 H 1.48497 * 109.46908 * 209.99810 * 17 15 13 20 20 H 1.48497 * 109.47129 * 330.00129 * 17 15 13 21 21 N 1.31232 * 125.97656 * 179.97438 * 8 7 5 22 22 C 1.39548 * 118.23023 * 359.47999 * 4 3 2 23 23 C 1.39070 * 118.93518 * 0.27095 * 22 4 3 24 24 N 1.39028 * 119.64208 * 179.97438 * 23 22 4 25 25 C 1.46497 * 120.00359 * 356.16955 * 24 23 22 26 26 C 1.53005 * 117.49613 * 230.00184 * 25 24 23 27 27 C 1.52998 * 117.50172 * 161.34223 * 25 24 23 28 28 N 1.31888 * 119.49845 * 179.72068 * 2 1 3 29 29 H 1.08992 * 109.47232 * 270.28183 * 1 2 3 30 30 H 1.09007 * 109.46786 * 30.27883 * 1 2 3 31 31 H 1.08991 * 109.47320 * 150.27599 * 1 2 3 32 32 H 1.08001 * 120.41609 * 0.02732 * 3 2 1 33 33 H 0.96997 * 120.00082 * 359.97438 * 7 5 4 34 34 H 1.08002 * 126.07255 * 359.97438 * 9 8 7 35 35 H 1.08002 * 126.07107 * 180.02562 * 10 9 8 36 36 H 1.08995 * 109.47094 * 244.99644 * 12 11 10 37 37 H 1.08998 * 109.47699 * 4.99888 * 12 11 10 38 38 H 0.97006 * 120.00113 * 180.02562 * 16 15 13 39 39 H 1.08007 * 120.53115 * 180.29565 * 22 4 3 40 40 H 0.97001 * 119.99680 * 176.16938 * 24 23 22 41 41 H 1.09001 * 115.54992 * 15.66869 * 25 24 23 42 42 H 1.09001 * 117.50021 * 359.97438 * 26 25 24 43 43 H 1.09001 * 117.50010 * 145.02070 * 26 25 24 44 44 H 1.08997 * 117.50099 * 214.97810 * 27 25 24 45 45 H 1.09006 * 117.49740 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1865 1.2009 0.0000 4 6 3.5865 1.1928 -0.0054 5 6 4.3540 2.4597 -0.0111 6 8 5.5691 2.4340 -0.0106 7 7 3.7050 3.6409 -0.0168 8 6 4.4309 4.8388 -0.0228 9 6 5.8303 4.9554 -0.0229 10 6 6.1369 6.2725 -0.0302 11 7 4.9796 6.9671 -0.0339 12 6 4.8519 8.4264 -0.0424 13 6 3.9958 8.8489 -1.2086 14 1 3.5881 8.1048 -1.8767 15 6 3.7332 10.1854 -1.4224 16 7 4.2293 11.0915 -0.6086 17 14 2.6727 10.7092 -2.8683 18 1 1.2490 10.7520 -2.4481 19 1 3.0937 12.0568 -3.3284 20 1 2.8322 9.7351 -3.9777 21 7 3.9221 6.0485 -0.0292 22 6 4.2395 -0.0404 0.0006 23 6 3.4787 -1.2046 0.0059 24 7 4.1141 -2.4412 0.0114 25 6 5.5748 -2.5146 -0.0732 26 6 6.1754 -3.4572 -1.1181 27 6 6.2433 -3.8182 0.3679 28 7 2.1564 -1.1479 0.0056 29 1 -0.3633 0.0051 1.0276 30 1 -0.3633 0.8875 -0.5182 31 1 -0.3633 -0.8924 -0.5095 32 1 1.6452 2.1355 0.0004 33 1 2.7352 3.6614 -0.0176 34 1 6.5364 4.1382 -0.0181 35 1 7.1314 6.6939 -0.0326 36 1 4.3878 8.7560 0.8871 37 1 5.8400 8.8772 -0.1349 38 1 4.0442 12.0318 -0.7588 39 1 5.3184 -0.0900 0.0016 40 1 3.5902 -3.2553 0.0711 41 1 6.1048 -1.5838 0.1288 42 1 5.4837 -4.0229 -1.7424 43 1 7.1008 -3.1467 -1.6033 44 1 7.2133 -3.7451 0.8597 45 1 5.5963 -4.6211 0.7214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361993021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:56 Heat of formation + Delta-G solvation = 101.628069 kcal Electronic energy + Delta-G solvation = -27704.717209 eV Core-core repulsion = 23724.504539 eV Total energy + Delta-G solvation = -3980.212670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.36673 -41.63066 -40.31096 -38.73560 -36.38456 -35.41963 -35.04611 -34.07220 -32.67430 -31.40422 -30.98383 -28.77310 -28.14329 -26.13149 -24.72535 -24.24714 -23.26963 -22.87496 -22.09769 -21.42153 -20.99861 -19.22082 -18.69514 -18.30577 -18.15069 -17.32062 -17.05784 -16.72596 -16.66268 -16.17060 -15.96807 -15.77511 -15.53429 -15.40585 -15.10391 -14.51299 -14.34938 -14.24683 -13.93400 -13.85451 -13.73684 -13.69259 -13.03035 -12.94274 -12.75543 -12.73857 -12.56072 -12.40058 -12.29770 -12.11333 -11.70349 -11.44283 -11.42192 -11.24637 -11.09234 -10.71949 -10.58579 -10.49152 -9.79703 -9.16872 -8.67470 -8.32881 -6.46628 -0.41368 0.19562 1.03290 1.24100 1.38982 1.39675 1.50922 1.55490 1.91630 2.19349 2.23905 2.38413 2.73462 2.99216 3.01934 3.27750 3.43991 3.74236 3.88484 3.91624 3.96367 4.03521 4.06658 4.12787 4.24086 4.49572 4.52991 4.69953 4.76180 4.78177 4.85917 4.86754 4.90177 4.94996 5.01880 5.02633 5.03937 5.14080 5.17373 5.21883 5.49838 5.56952 5.79522 5.84960 5.95116 6.15007 6.26855 6.49276 6.64511 6.84582 7.01634 7.05856 7.23233 8.74851 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016459 B = 0.002081 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.811040 B =13452.243591 C =14575.401334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.174 3.826 3 C -0.203 4.203 4 C -0.045 4.045 5 C 0.569 3.431 6 O -0.533 6.533 7 N -0.614 5.614 8 C 0.263 3.737 9 C -0.293 4.293 10 C 0.059 3.941 11 N -0.341 5.341 12 C 0.271 3.729 13 C -0.547 4.547 14 H 0.053 0.947 15 C 0.018 3.982 16 N -0.920 5.920 17 Si 0.972 3.028 18 H -0.272 1.272 19 H -0.273 1.273 20 H -0.273 1.273 21 N -0.340 5.340 22 C -0.193 4.193 23 C 0.403 3.597 24 N -0.686 5.686 25 C 0.063 3.937 26 C -0.192 4.192 27 C -0.171 4.171 28 N -0.542 5.542 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.424 0.576 34 H 0.169 0.831 35 H 0.204 0.796 36 H 0.023 0.977 37 H 0.060 0.940 38 H 0.272 0.728 39 H 0.146 0.854 40 H 0.412 0.588 41 H 0.129 0.871 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.116 0.884 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 -29.065 1.770 29.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.036 3.964 3 C -0.226 4.226 4 C -0.056 4.056 5 C 0.357 3.643 6 O -0.408 6.408 7 N -0.263 5.263 8 C 0.009 3.991 9 C -0.324 4.324 10 C -0.090 4.090 11 N -0.123 5.123 12 C 0.153 3.847 13 C -0.585 4.585 14 H 0.071 0.929 15 C -0.182 4.182 16 N -0.558 5.558 17 Si 0.796 3.204 18 H -0.197 1.197 19 H -0.198 1.198 20 H -0.198 1.198 21 N -0.171 5.171 22 C -0.219 4.219 23 C 0.167 3.833 24 N -0.317 5.317 25 C -0.044 4.044 26 C -0.231 4.231 27 C -0.209 4.209 28 N -0.261 5.261 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.175 0.825 33 H 0.264 0.736 34 H 0.186 0.814 35 H 0.220 0.780 36 H 0.041 0.959 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.164 0.836 40 H 0.249 0.751 41 H 0.147 0.853 42 H 0.116 0.884 43 H 0.127 0.873 44 H 0.134 0.866 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.800 -28.815 1.810 28.928 hybrid contribution 0.228 0.705 -0.531 0.912 sum -1.573 -28.110 1.279 28.183 Atomic orbital electron populations 1.20868 0.85916 1.04790 1.04481 1.21354 0.98092 0.86265 0.90660 1.22067 0.92412 1.00951 1.07206 1.19693 0.94122 0.91494 1.00289 1.18501 0.87127 0.83030 0.75693 1.90681 1.14388 1.87070 1.48667 1.42314 1.10830 1.01434 1.71734 1.19347 0.91647 0.86314 1.01810 1.21726 0.93909 0.96684 1.20096 1.23191 0.93385 0.91994 1.00432 1.48876 1.02606 1.07220 1.53626 1.19372 0.98871 0.68996 0.97470 1.21391 1.32633 0.92681 1.11821 0.92912 1.25735 0.96976 0.95961 0.99555 1.69990 1.45283 1.01951 1.38620 0.85348 0.78766 0.77654 0.78655 1.19739 1.19769 1.19771 1.77261 1.13287 0.96649 1.29906 1.21511 1.01797 0.90305 1.08244 1.18180 0.87984 0.86461 0.90675 1.43792 1.05021 1.04204 1.78691 1.21779 0.79472 0.97141 1.05965 1.23563 1.03537 1.03276 0.92768 1.23463 1.03017 0.97150 0.97302 1.66904 1.07725 1.30981 1.20526 0.88788 0.88489 0.90078 0.82479 0.73639 0.81393 0.77964 0.95908 0.92209 0.91844 0.83602 0.75072 0.85300 0.88352 0.87256 0.86588 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 10.16 71.24 0.72 -0.46 16 2 C 0.17 3.20 6.77 42.49 0.29 3.49 16 3 C -0.20 -3.93 9.23 22.64 0.21 -3.72 16 4 C -0.05 -1.08 5.90 -19.91 -0.12 -1.20 16 5 C 0.57 16.98 7.76 86.87 0.67 17.66 16 6 O -0.53 -18.55 13.56 -3.83 -0.05 -18.60 16 7 N -0.61 -19.07 5.40 -309.89 -1.67 -20.75 16 8 C 0.26 10.50 8.11 133.35 1.08 11.58 16 9 C -0.29 -11.40 9.60 22.11 0.21 -11.18 16 10 C 0.06 2.28 11.44 83.52 0.96 3.24 16 11 N -0.34 -15.90 3.67 -351.84 -1.29 -17.19 16 12 C 0.27 13.96 6.26 85.63 0.54 14.50 16 13 C -0.55 -30.64 9.24 25.60 0.24 -30.41 16 14 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 15 C 0.02 1.00 5.46 84.66 0.46 1.46 16 16 N -0.92 -51.77 13.29 21.45 0.28 -51.49 16 17 Si 0.97 43.35 29.54 68.60 2.03 45.37 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 21 N -0.34 -15.70 12.42 -54.49 -0.68 -16.37 16 22 C -0.19 -4.39 8.92 22.79 0.20 -4.19 16 23 C 0.40 8.34 7.64 133.05 1.02 9.36 16 24 N -0.69 -10.63 5.75 -324.61 -1.87 -12.50 16 25 C 0.06 0.80 6.26 44.99 0.28 1.09 16 26 C -0.19 -1.92 10.46 30.62 0.32 -1.60 16 27 C -0.17 -1.44 10.45 30.62 0.32 -1.12 16 28 N -0.54 -11.29 10.28 -181.48 -1.86 -13.16 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 0.80 8.08 -2.38 -0.02 0.78 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.16 2.30 6.53 -2.91 -0.02 2.28 16 33 H 0.42 10.65 6.96 -92.71 -0.65 10.00 16 34 H 0.17 6.25 5.91 -2.91 -0.02 6.24 16 35 H 0.20 6.16 8.06 -2.91 -0.02 6.14 16 36 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 3.00 8.07 -2.39 -0.02 2.98 16 38 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 39 H 0.15 3.24 5.58 -2.91 -0.02 3.22 16 40 H 0.41 5.35 8.93 -92.71 -0.83 4.52 16 41 H 0.13 1.79 5.94 -2.39 -0.01 1.78 16 42 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.11 0.73 8.14 -2.38 -0.02 0.72 16 Total: -1.00 -70.58 386.06 1.88 -68.70 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: -0.41 Total: 27.49 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 7.40 Total: 8.49 kcal Atomic # 7 Polarization: -124.36 SS G_CDS: -7.09 Total: -131.45 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.05 Total: -18.60 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -70.58 1.88 -68.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361993021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.330 kcal (2) G-P(sol) polarization free energy of solvation -70.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds