Wall clock time and date at job start Sat Apr 11 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38045 * 126.29572 * 2 1 4 4 C 1.47432 * 126.41033 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00099 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99694 * 180.02562 * 4 3 2 7 7 C 1.47021 * 125.64969 * 359.97438 * 6 4 3 8 8 C 1.54322 * 107.27099 * 181.10772 * 7 6 4 9 9 C 1.55158 * 102.94270 * 22.18803 * 8 7 6 10 10 H 1.09003 * 111.00011 * 82.61871 * 9 8 7 11 11 C 1.50701 * 111.00521 * 206.42336 * 9 8 7 12 12 N 1.31789 * 119.12496 * 240.00165 * 11 9 8 13 13 C 1.32334 * 120.82070 * 180.02562 * 12 11 9 14 14 C 1.38603 * 119.10298 * 0.02562 * 13 12 11 15 15 C 1.38596 * 118.39882 * 359.97438 * 14 13 12 16 16 N 1.31801 * 119.11767 * 59.98288 * 11 9 8 17 17 C 1.47426 * 125.64471 * 180.02562 * 6 4 3 18 18 C 1.41292 * 107.17144 * 180.24706 * 3 2 1 19 19 N 1.30440 * 108.02150 * 359.61079 * 18 3 2 20 20 N 1.34266 * 126.29107 * 180.02562 * 2 1 3 21 21 C 1.46500 * 125.75134 * 359.97438 * 20 2 1 22 22 C 1.50700 * 109.46941 * 90.00085 * 21 20 2 23 23 H 1.07999 * 120.00538 * 0.02562 * 22 21 20 24 24 C 1.37876 * 120.00165 * 179.97438 * 22 21 20 25 25 N 1.31521 * 119.99726 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00367 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47107 * 90.00197 * 26 24 22 28 28 H 1.48497 * 109.47330 * 210.00512 * 26 24 22 29 29 H 1.48501 * 109.47209 * 330.00788 * 26 24 22 30 30 H 1.09003 * 109.46590 * 90.00442 * 1 2 3 31 31 H 1.08996 * 109.47171 * 209.99989 * 1 2 3 32 32 H 1.08999 * 109.46724 * 330.00468 * 1 2 3 33 33 H 1.08993 * 109.88233 * 61.68535 * 7 6 4 34 34 H 1.09001 * 109.88044 * 300.52094 * 7 6 4 35 35 H 1.09004 * 110.71459 * 263.83230 * 8 7 6 36 36 H 1.08992 * 110.72430 * 140.55593 * 8 7 6 37 37 H 1.08002 * 120.45044 * 179.72914 * 13 12 11 38 38 H 1.07995 * 120.80026 * 180.02562 * 14 13 12 39 39 H 1.07994 * 120.45171 * 180.02562 * 15 14 13 40 40 H 1.09000 * 110.36928 * 36.98421 * 17 6 4 41 41 H 1.09006 * 110.36343 * 274.66142 * 17 6 4 42 42 H 1.08004 * 125.98416 * 179.73484 * 18 3 2 43 43 H 1.09001 * 109.47089 * 210.00250 * 21 20 2 44 44 H 1.08995 * 109.47315 * 330.00106 * 21 20 2 45 45 H 0.97000 * 119.99937 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0006 6 7 2.8000 3.5106 -0.0010 7 6 4.2591 3.3299 -0.0005 8 6 4.8949 4.7358 0.0272 9 6 3.7607 5.6187 0.6117 10 1 3.7427 5.5616 1.7001 11 6 3.8961 7.0471 0.1509 12 7 4.0504 7.9990 1.0493 13 6 4.1720 9.2645 0.6821 14 6 4.1349 9.5817 -0.6667 15 6 3.9712 8.5534 -1.5814 16 7 3.8575 7.3111 -1.1398 17 6 2.5024 4.9545 -0.0010 18 6 3.6591 0.6497 -0.0058 19 7 3.6340 -0.6544 -0.0006 20 7 2.3017 -1.0822 -0.0005 21 6 1.8500 -2.4758 -0.0006 22 6 1.6947 -2.9534 -1.4214 23 1 1.9111 -2.2858 -2.2423 24 6 1.2771 -4.2430 -1.6735 25 7 1.0140 -5.0562 -0.6739 26 14 1.0839 -4.8348 -3.4347 27 1 2.3647 -5.4227 -3.9028 28 1 0.0150 -5.8638 -3.4967 29 1 0.7183 -3.6883 -4.3049 30 1 -0.3632 -0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 4.5674 2.8013 -0.9024 34 1 4.5627 2.7684 0.8830 35 1 5.1562 5.0607 -0.9800 36 1 5.7694 4.7510 0.6775 37 1 4.2938 10.0403 1.4236 38 1 4.2319 10.6054 -0.9969 39 1 3.9381 8.7629 -2.6403 40 1 1.6266 5.1614 0.6141 41 1 2.3441 5.3092 -1.0195 42 1 4.5449 1.2675 -0.0114 43 1 2.5848 -3.0959 0.5129 44 1 0.8916 -2.5472 0.5135 45 1 0.7199 -5.9634 -0.8513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363668411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:59 Heat of formation + Delta-G solvation = 95.900406 kcal Electronic energy + Delta-G solvation = -28545.654692 eV Core-core repulsion = 24565.193652 eV Total energy + Delta-G solvation = -3980.461040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.54559 -40.80772 -39.32961 -37.18373 -34.11801 -33.97100 -33.42328 -32.06685 -31.20668 -30.75741 -29.29661 -27.31648 -26.65704 -25.11998 -24.74426 -23.50248 -23.35871 -21.17498 -20.99461 -19.83480 -18.39744 -18.02492 -17.48514 -16.85795 -16.65873 -16.15205 -15.49262 -15.37121 -15.23784 -15.00232 -14.60515 -14.45845 -14.03944 -13.84083 -13.65509 -13.47700 -13.33859 -12.75281 -12.59741 -12.43062 -12.32331 -12.09934 -11.91227 -11.67543 -11.49687 -11.41847 -11.24556 -11.15692 -11.08148 -11.01995 -10.86194 -10.34651 -10.14248 -9.90740 -9.89260 -9.62707 -9.36660 -8.68955 -8.61395 -8.47151 -7.86168 -6.31498 -4.39060 0.43831 0.67215 2.22190 2.84651 2.98263 3.19934 3.26167 3.28692 3.29729 3.43043 3.55488 3.73073 3.93313 4.16829 4.26224 4.34140 4.40450 4.57795 4.65199 4.73805 5.02006 5.04526 5.09793 5.14012 5.22060 5.27058 5.36078 5.46217 5.53738 5.60350 5.73052 5.80507 5.82987 5.90644 5.93593 6.00805 6.16438 6.36105 6.52925 6.58250 6.60946 6.84463 6.93886 7.20554 7.58819 7.68922 7.73549 7.79717 7.82284 8.41456 8.60870 8.66973 9.27641 10.76702 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026356 B = 0.002067 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.136246 B =13543.391895 C =13607.936097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.165 3.835 3 C -0.328 4.328 4 C 0.621 3.379 5 O -0.554 6.554 6 N -0.620 5.620 7 C 0.099 3.901 8 C -0.118 4.118 9 C -0.040 4.040 10 H 0.112 0.888 11 C 0.335 3.665 12 N -0.515 5.515 13 C 0.150 3.850 14 C -0.235 4.235 15 C 0.152 3.848 16 N -0.510 5.510 17 C 0.127 3.873 18 C 0.045 3.955 19 N -0.297 5.297 20 N -0.314 5.314 21 C 0.251 3.749 22 C -0.539 4.539 23 H 0.065 0.935 24 C 0.067 3.933 25 N -0.890 5.890 26 Si 0.908 3.092 27 H -0.277 1.277 28 H -0.283 1.283 29 H -0.271 1.271 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.169 0.831 38 H 0.148 0.852 39 H 0.170 0.830 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.185 0.815 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.474 27.658 1.997 28.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.028 3.972 3 C -0.343 4.343 4 C 0.414 3.586 5 O -0.433 6.433 6 N -0.354 5.354 7 C -0.024 4.024 8 C -0.157 4.157 9 C -0.061 4.061 10 H 0.130 0.870 11 C 0.067 3.933 12 N -0.229 5.229 13 C -0.016 4.016 14 C -0.257 4.257 15 C -0.014 4.014 16 N -0.223 5.223 17 C 0.003 3.997 18 C -0.141 4.141 19 N -0.117 5.117 20 N -0.091 5.091 21 C 0.134 3.866 22 C -0.577 4.577 23 H 0.083 0.917 24 C -0.137 4.137 25 N -0.527 5.527 26 Si 0.735 3.265 27 H -0.203 1.203 28 H -0.208 1.208 29 H -0.196 1.196 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.186 0.814 38 H 0.166 0.834 39 H 0.187 0.813 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.202 0.798 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.311 25.319 2.360 26.459 hybrid contribution -0.242 1.370 -1.296 1.902 sum 7.069 26.690 1.064 27.630 Atomic orbital electron populations 1.20567 0.86818 1.03751 1.03923 1.21452 0.94929 0.86504 0.94311 1.19565 0.93212 0.92108 1.29440 1.16966 0.83989 0.83193 0.74458 1.90697 1.16187 1.84092 1.52320 1.48062 1.06246 1.05383 1.75756 1.22322 0.80696 0.96934 1.02437 1.22748 0.96987 0.93373 1.02608 1.21170 0.97217 0.86017 1.01680 0.86986 1.22755 0.90117 0.95564 0.84845 1.68260 1.13719 1.01268 1.39638 1.23268 0.89970 0.93380 0.95021 1.22940 1.04540 1.02437 0.95799 1.23295 0.89564 0.87492 1.01087 1.68213 1.13944 1.22803 1.17374 1.22044 0.95966 0.80202 1.01472 1.24364 0.96928 0.92607 1.00198 1.77145 0.98575 1.12388 1.23599 1.49374 1.02555 1.08255 1.48877 1.19847 0.96408 0.70955 0.99418 1.21249 1.47326 0.98109 0.91022 0.91670 1.24927 0.94480 0.96012 0.98289 1.69917 1.44582 1.07137 1.31094 0.86321 0.78066 0.78621 0.83505 1.20260 1.20808 1.19603 0.89840 0.90865 0.88855 0.90357 0.90460 0.89510 0.89584 0.81414 0.83444 0.81335 0.90323 0.90403 0.79806 0.92519 0.92572 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.73 9.57 36.00 0.34 -1.38 16 2 C 0.17 3.48 7.01 -81.60 -0.57 2.90 16 3 C -0.33 -6.28 6.09 -105.06 -0.64 -6.92 16 4 C 0.62 11.10 7.85 -12.52 -0.10 11.00 16 5 O -0.55 -11.21 15.09 5.28 0.08 -11.13 16 6 N -0.62 -8.63 3.33 -171.78 -0.57 -9.20 16 7 C 0.10 1.04 4.98 -3.07 -0.02 1.02 16 8 C -0.12 -1.00 6.39 -24.90 -0.16 -1.16 16 9 C -0.04 -0.39 3.43 -89.62 -0.31 -0.69 16 10 H 0.11 1.05 8.13 -51.93 -0.42 0.63 16 11 C 0.33 3.31 6.56 -157.19 -1.03 2.28 16 12 N -0.52 -4.87 10.33 -10.72 -0.11 -4.98 16 13 C 0.15 0.95 11.31 -17.20 -0.19 0.76 16 14 C -0.24 -1.18 10.17 -39.31 -0.40 -1.58 16 15 C 0.15 0.99 11.30 -17.20 -0.19 0.80 16 16 N -0.51 -4.85 9.24 -10.73 -0.10 -4.95 16 17 C 0.13 1.54 6.35 -2.53 -0.02 1.53 16 18 C 0.05 0.82 10.45 -16.98 -0.18 0.64 16 19 N -0.30 -6.50 12.50 30.86 0.39 -6.12 16 20 N -0.31 -7.23 3.56 -57.78 -0.21 -7.44 16 21 C 0.25 6.32 5.97 -5.19 -0.03 6.29 16 22 C -0.54 -14.67 9.39 -34.44 -0.32 -14.99 16 23 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 24 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 25 N -0.89 -24.77 13.29 55.43 0.74 -24.04 16 26 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 30 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.07 1.32 7.05 -51.93 -0.37 0.96 16 32 H 0.09 1.67 6.50 -51.93 -0.34 1.34 16 33 H 0.08 0.81 6.98 -51.93 -0.36 0.45 16 34 H 0.08 0.75 6.85 -51.93 -0.36 0.39 16 35 H 0.09 0.76 7.72 -51.93 -0.40 0.36 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.17 0.53 8.06 -52.49 -0.42 0.10 16 38 H 0.15 0.27 8.06 -52.49 -0.42 -0.16 16 39 H 0.17 0.61 8.06 -52.49 -0.42 0.18 16 40 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 41 H 0.08 0.99 7.48 -51.93 -0.39 0.61 16 42 H 0.19 2.49 4.47 -52.48 -0.23 2.25 16 43 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.06 1.40 7.02 -51.93 -0.36 1.04 16 45 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -33.75 375.41 -8.79 -42.54 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.73 Total: 1.44 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -3.91 Total: 2.21 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.14 Total: -56.72 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.75 -8.79 -42.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363668411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.444 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds