Wall clock time and date at job start Sat Apr 11 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38041 * 126.28940 * 2 1 4 4 C 1.47424 * 126.41928 * 0.02562 * 3 2 1 5 5 O 1.21611 * 119.99557 * 359.71007 * 4 3 2 6 6 N 1.34778 * 120.00337 * 179.70970 * 4 3 2 7 7 C 1.47015 * 125.64638 * 0.02562 * 6 4 3 8 8 C 1.54320 * 107.27173 * 178.90694 * 7 6 4 9 9 C 1.55158 * 102.94191 * 337.80855 * 8 7 6 10 10 H 1.09001 * 111.00311 * 277.39306 * 9 8 7 11 11 C 1.50697 * 111.00571 * 153.57943 * 9 8 7 12 12 N 1.31789 * 119.12763 * 123.18303 * 11 9 8 13 13 C 1.32336 * 120.82102 * 179.97438 * 12 11 9 14 14 C 1.38596 * 119.10384 * 359.97438 * 13 12 11 15 15 C 1.38596 * 118.40056 * 0.28021 * 14 13 12 16 16 N 1.31796 * 119.11856 * 303.15442 * 11 9 8 17 17 C 1.47467 * 125.62692 * 179.97438 * 6 4 3 18 18 C 1.41296 * 107.16762 * 179.75772 * 3 2 1 19 19 N 1.30451 * 108.02071 * 0.24066 * 18 3 2 20 20 N 1.34261 * 126.29008 * 180.17646 * 2 1 3 21 21 C 1.46499 * 125.75476 * 0.03720 * 20 2 1 22 22 C 1.50697 * 109.47053 * 270.27192 * 21 20 2 23 23 H 1.08003 * 120.00229 * 359.97438 * 22 21 20 24 24 C 1.37882 * 120.00331 * 180.02562 * 22 21 20 25 25 N 1.31516 * 119.99464 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00313 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47181 * 89.99541 * 26 24 22 28 28 H 1.48491 * 109.46926 * 209.99848 * 26 24 22 29 29 H 1.48499 * 109.46986 * 329.99804 * 26 24 22 30 30 H 1.09006 * 109.46454 * 89.99958 * 1 2 3 31 31 H 1.08997 * 109.46789 * 209.99481 * 1 2 3 32 32 H 1.08996 * 109.47246 * 330.00240 * 1 2 3 33 33 H 1.09007 * 109.88535 * 59.48818 * 7 6 4 34 34 H 1.09000 * 109.88260 * 298.32669 * 7 6 4 35 35 H 1.09003 * 110.72302 * 219.44262 * 8 7 6 36 36 H 1.09004 * 110.87509 * 96.24097 * 8 7 6 37 37 H 1.08000 * 120.44445 * 180.02562 * 13 12 11 38 38 H 1.08002 * 120.79700 * 179.97438 * 14 13 12 39 39 H 1.07999 * 120.44937 * 179.72640 * 15 14 13 40 40 H 1.09001 * 110.34765 * 85.32280 * 17 6 4 41 41 H 1.09000 * 110.40725 * 322.98683 * 17 6 4 42 42 H 1.07999 * 125.98973 * 180.24616 * 18 3 2 43 43 H 1.08995 * 109.47206 * 30.26777 * 21 20 2 44 44 H 1.09003 * 109.47358 * 150.27257 * 21 20 2 45 45 H 0.96999 * 119.99401 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8859 2.5203 0.0005 5 8 0.6996 2.7877 -0.0043 6 7 2.8000 3.5107 0.0064 7 6 4.2590 3.3300 0.0121 8 6 4.8949 4.7359 -0.0105 9 6 3.7633 5.6197 -0.5987 10 1 3.7501 5.5642 -1.6872 11 6 3.8967 7.0474 -0.1351 12 7 3.9913 8.0073 -1.0332 13 6 4.1092 9.2725 -0.6635 14 6 4.1318 9.5807 0.6876 15 6 4.0352 8.5437 1.6020 16 7 3.9150 7.3029 1.1577 17 6 2.5018 4.9549 0.0071 18 6 3.6591 0.6498 0.0057 19 7 3.6340 -0.6545 0.0037 20 7 2.3017 -1.0822 -0.0033 21 6 1.8501 -2.4758 -0.0084 22 6 1.6881 -2.9565 1.4106 23 1 1.9007 -2.2906 2.2340 24 6 1.2695 -4.2467 1.6580 25 7 1.0110 -5.0577 0.6554 26 14 1.0693 -4.8428 3.4170 27 1 -0.3156 -4.5695 3.8777 28 1 1.3322 -6.3030 3.4777 29 1 2.0325 -4.1296 4.2939 30 1 -0.3632 0.0000 -1.0278 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5138 33 1 4.5667 2.7698 -0.8710 34 1 4.5634 2.7999 0.9145 35 1 5.7723 4.7521 -0.6570 36 1 5.1540 5.0613 0.9971 37 1 4.1859 10.0543 -1.4046 38 1 4.2273 10.6039 1.0198 39 1 4.0539 8.7458 2.6628 40 1 2.3386 5.3077 1.0254 41 1 1.6290 5.1630 -0.6118 42 1 4.5450 1.2676 0.0109 43 1 0.8941 -2.5461 -0.5271 44 1 2.5873 -3.0948 -0.5198 45 1 0.7162 -5.9653 0.8294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363668416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:02 Heat of formation + Delta-G solvation = 95.550303 kcal Electronic energy + Delta-G solvation = -28545.805424 eV Core-core repulsion = 24565.329202 eV Total energy + Delta-G solvation = -3980.476221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.54538 -40.80532 -39.32651 -37.18133 -34.11753 -33.97284 -33.42410 -32.05849 -31.20521 -30.75388 -29.29815 -27.31404 -26.65709 -25.10806 -24.75553 -23.50114 -23.35086 -21.17052 -20.99698 -19.83905 -18.39917 -18.02397 -17.48494 -16.85518 -16.65578 -16.15371 -15.49474 -15.36522 -15.23380 -14.97716 -14.61810 -14.47111 -14.02729 -13.82364 -13.65420 -13.47667 -13.33526 -12.75930 -12.56078 -12.48631 -12.34126 -12.04535 -11.91570 -11.68119 -11.49734 -11.41086 -11.24159 -11.16109 -11.07633 -11.01268 -10.87627 -10.34620 -10.13687 -9.90882 -9.89508 -9.62675 -9.36380 -8.69399 -8.61200 -8.47150 -7.86499 -6.31768 -4.39514 0.43794 0.67198 2.21963 2.84601 2.98225 3.19544 3.25996 3.28687 3.30017 3.43372 3.55598 3.73070 3.93310 4.16805 4.26046 4.34583 4.40273 4.57761 4.65190 4.74037 5.01805 5.04484 5.09842 5.13936 5.22028 5.27422 5.36069 5.46365 5.54297 5.60573 5.73861 5.81795 5.82751 5.90792 5.94177 6.00811 6.13649 6.37574 6.56389 6.58359 6.64102 6.83220 6.93000 7.20836 7.58725 7.68959 7.73439 7.79577 7.82299 8.41537 8.60737 8.66907 9.27344 10.76353 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026363 B = 0.002067 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.829505 B =13543.971115 C =13610.614723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.166 3.834 3 C -0.328 4.328 4 C 0.621 3.379 5 O -0.554 6.554 6 N -0.619 5.619 7 C 0.099 3.901 8 C -0.119 4.119 9 C -0.040 4.040 10 H 0.112 0.888 11 C 0.335 3.665 12 N -0.515 5.515 13 C 0.150 3.850 14 C -0.235 4.235 15 C 0.152 3.848 16 N -0.510 5.510 17 C 0.127 3.873 18 C 0.045 3.955 19 N -0.297 5.297 20 N -0.314 5.314 21 C 0.251 3.749 22 C -0.540 4.540 23 H 0.065 0.935 24 C 0.067 3.933 25 N -0.889 5.889 26 Si 0.908 3.092 27 H -0.276 1.276 28 H -0.283 1.283 29 H -0.272 1.272 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.169 0.831 38 H 0.148 0.852 39 H 0.170 0.830 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.185 0.815 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.491 27.622 -1.852 28.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.028 3.972 3 C -0.343 4.343 4 C 0.414 3.586 5 O -0.433 6.433 6 N -0.354 5.354 7 C -0.024 4.024 8 C -0.157 4.157 9 C -0.061 4.061 10 H 0.130 0.870 11 C 0.067 3.933 12 N -0.229 5.229 13 C -0.016 4.016 14 C -0.257 4.257 15 C -0.014 4.014 16 N -0.223 5.223 17 C 0.004 3.996 18 C -0.141 4.141 19 N -0.117 5.117 20 N -0.091 5.091 21 C 0.134 3.866 22 C -0.578 4.578 23 H 0.083 0.917 24 C -0.137 4.137 25 N -0.527 5.527 26 Si 0.735 3.265 27 H -0.202 1.202 28 H -0.208 1.208 29 H -0.196 1.196 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.186 0.814 38 H 0.166 0.834 39 H 0.187 0.813 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.202 0.798 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.334 25.281 -2.218 26.416 hybrid contribution -0.263 1.387 1.253 1.888 sum 7.071 26.668 -0.966 27.606 Atomic orbital electron populations 1.20613 0.86853 1.04822 1.03267 1.21450 0.94935 0.86469 0.94299 1.19568 0.93232 0.92115 1.29387 1.16969 0.83991 0.83200 0.74455 1.90700 1.16186 1.84096 1.52322 1.48071 1.06259 1.05359 1.75753 1.22320 0.80672 0.96950 1.02434 1.22751 0.96964 0.93333 1.02698 1.21173 0.97214 0.86025 1.01673 0.86988 1.22752 0.90161 0.95530 0.84843 1.68263 1.13771 1.01090 1.39756 1.23267 0.89864 0.93492 0.95017 1.22940 1.04603 1.02389 0.95778 1.23296 0.89566 0.87466 1.01118 1.68207 1.13657 1.23155 1.17313 1.22046 0.95960 0.80226 1.01402 1.24369 0.96929 0.92607 1.00223 1.77146 0.98610 1.12383 1.23552 1.49379 1.02548 1.08249 1.48893 1.19845 0.96418 0.70970 0.99401 1.21262 1.47375 0.98121 0.91063 0.91650 1.24931 0.94496 0.96005 0.98270 1.69918 1.44522 1.07233 1.31009 0.86321 0.78763 0.77942 0.83503 1.20204 1.20813 1.19634 0.90517 0.89888 0.88663 0.90468 0.90352 0.89643 0.89384 0.81415 0.83443 0.81333 0.90549 0.90281 0.79813 0.92580 0.92487 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 9.34 36.01 0.34 -1.48 16 2 C 0.17 3.48 7.01 -81.60 -0.57 2.91 16 3 C -0.33 -6.28 6.09 -105.07 -0.64 -6.92 16 4 C 0.62 11.11 7.85 -12.52 -0.10 11.01 16 5 O -0.55 -11.22 15.10 5.27 0.08 -11.14 16 6 N -0.62 -8.63 3.33 -171.74 -0.57 -9.21 16 7 C 0.10 1.04 4.98 -3.07 -0.02 1.03 16 8 C -0.12 -1.01 6.39 -24.90 -0.16 -1.16 16 9 C -0.04 -0.39 3.42 -89.61 -0.31 -0.69 16 10 H 0.11 1.05 8.13 -51.93 -0.42 0.63 16 11 C 0.33 3.31 6.56 -157.20 -1.03 2.28 16 12 N -0.52 -4.88 10.33 -10.73 -0.11 -4.99 16 13 C 0.15 0.95 11.30 -17.20 -0.19 0.76 16 14 C -0.24 -1.18 10.17 -39.32 -0.40 -1.58 16 15 C 0.15 0.99 11.31 -17.20 -0.19 0.80 16 16 N -0.51 -4.83 9.23 -10.73 -0.10 -4.93 16 17 C 0.13 1.55 6.35 -2.49 -0.02 1.53 16 18 C 0.05 0.81 10.45 -16.98 -0.18 0.64 16 19 N -0.30 -6.51 12.50 30.86 0.39 -6.12 16 20 N -0.31 -7.23 3.56 -57.77 -0.21 -7.44 16 21 C 0.25 6.32 5.78 -5.20 -0.03 6.29 16 22 C -0.54 -14.66 9.39 -34.44 -0.32 -14.99 16 23 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 24 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 25 N -0.89 -24.73 13.29 55.43 0.74 -23.99 16 26 Si 0.91 20.98 29.54 -169.99 -5.02 15.95 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.08 1.60 7.71 -51.93 -0.40 1.20 16 32 H 0.09 1.76 6.51 -51.93 -0.34 1.42 16 33 H 0.08 0.75 6.83 -51.93 -0.35 0.40 16 34 H 0.08 0.81 7.00 -51.93 -0.36 0.45 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.77 7.62 -51.93 -0.40 0.38 16 37 H 0.17 0.53 8.06 -52.49 -0.42 0.11 16 38 H 0.15 0.27 8.06 -52.49 -0.42 -0.16 16 39 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.08 0.97 7.57 -51.93 -0.39 0.58 16 41 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 42 H 0.19 2.49 4.47 -52.49 -0.23 2.25 16 43 H 0.06 1.40 7.64 -51.93 -0.40 1.01 16 44 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -33.69 376.27 -8.85 -42.54 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.80 Total: 1.52 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -3.92 Total: 2.13 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.14 Total: -56.68 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.08 Total: -11.14 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.69 -8.85 -42.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363668416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.094 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds