Wall clock time and date at job start Sat Apr 11 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38041 * 126.28940 * 2 1 4 4 C 1.47424 * 126.41928 * 0.02562 * 3 2 1 5 5 O 1.21611 * 119.99557 * 359.71007 * 4 3 2 6 6 N 1.34778 * 120.00337 * 179.70970 * 4 3 2 7 7 C 1.47015 * 125.64638 * 0.02562 * 6 4 3 8 8 C 1.54320 * 107.27173 * 178.90694 * 7 6 4 9 9 C 1.55158 * 102.94191 * 337.80855 * 8 7 6 10 10 H 1.09001 * 111.00311 * 277.39306 * 9 8 7 11 11 C 1.50697 * 111.00571 * 153.57943 * 9 8 7 12 12 N 1.31789 * 119.12763 * 123.18303 * 11 9 8 13 13 C 1.32336 * 120.82102 * 179.97438 * 12 11 9 14 14 C 1.38596 * 119.10384 * 359.97438 * 13 12 11 15 15 C 1.38596 * 118.40056 * 0.28021 * 14 13 12 16 16 N 1.31796 * 119.11856 * 303.15442 * 11 9 8 17 17 C 1.47467 * 125.62692 * 179.97438 * 6 4 3 18 18 C 1.41296 * 107.16762 * 179.75772 * 3 2 1 19 19 N 1.30451 * 108.02071 * 0.24066 * 18 3 2 20 20 N 1.34261 * 126.29008 * 180.17646 * 2 1 3 21 21 C 1.46499 * 125.75476 * 0.03720 * 20 2 1 22 22 C 1.50697 * 109.47053 * 270.27192 * 21 20 2 23 23 H 1.08003 * 120.00229 * 359.97438 * 22 21 20 24 24 C 1.37882 * 120.00331 * 180.02562 * 22 21 20 25 25 N 1.31516 * 119.99464 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00313 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47181 * 89.99541 * 26 24 22 28 28 H 1.48491 * 109.46926 * 209.99848 * 26 24 22 29 29 H 1.48499 * 109.46986 * 329.99804 * 26 24 22 30 30 H 1.09006 * 109.46454 * 89.99958 * 1 2 3 31 31 H 1.08997 * 109.46789 * 209.99481 * 1 2 3 32 32 H 1.08996 * 109.47246 * 330.00240 * 1 2 3 33 33 H 1.09007 * 109.88535 * 59.48818 * 7 6 4 34 34 H 1.09000 * 109.88260 * 298.32669 * 7 6 4 35 35 H 1.09003 * 110.72302 * 219.44262 * 8 7 6 36 36 H 1.09004 * 110.87509 * 96.24097 * 8 7 6 37 37 H 1.08000 * 120.44445 * 180.02562 * 13 12 11 38 38 H 1.08002 * 120.79700 * 179.97438 * 14 13 12 39 39 H 1.07999 * 120.44937 * 179.72640 * 15 14 13 40 40 H 1.09001 * 110.34765 * 85.32280 * 17 6 4 41 41 H 1.09000 * 110.40725 * 322.98683 * 17 6 4 42 42 H 1.07999 * 125.98973 * 180.24616 * 18 3 2 43 43 H 1.08995 * 109.47206 * 30.26777 * 21 20 2 44 44 H 1.09003 * 109.47358 * 150.27257 * 21 20 2 45 45 H 0.96999 * 119.99401 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8859 2.5203 0.0005 5 8 0.6996 2.7877 -0.0043 6 7 2.8000 3.5107 0.0064 7 6 4.2590 3.3300 0.0121 8 6 4.8949 4.7359 -0.0105 9 6 3.7633 5.6197 -0.5987 10 1 3.7501 5.5642 -1.6872 11 6 3.8967 7.0474 -0.1351 12 7 3.9913 8.0073 -1.0332 13 6 4.1092 9.2725 -0.6635 14 6 4.1318 9.5807 0.6876 15 6 4.0352 8.5437 1.6020 16 7 3.9150 7.3029 1.1577 17 6 2.5018 4.9549 0.0071 18 6 3.6591 0.6498 0.0057 19 7 3.6340 -0.6545 0.0037 20 7 2.3017 -1.0822 -0.0033 21 6 1.8501 -2.4758 -0.0084 22 6 1.6881 -2.9565 1.4106 23 1 1.9007 -2.2906 2.2340 24 6 1.2695 -4.2467 1.6580 25 7 1.0110 -5.0577 0.6554 26 14 1.0693 -4.8428 3.4170 27 1 -0.3156 -4.5695 3.8777 28 1 1.3322 -6.3030 3.4777 29 1 2.0325 -4.1296 4.2939 30 1 -0.3632 0.0000 -1.0278 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5138 33 1 4.5667 2.7698 -0.8710 34 1 4.5634 2.7999 0.9145 35 1 5.7723 4.7521 -0.6570 36 1 5.1540 5.0613 0.9971 37 1 4.1859 10.0543 -1.4046 38 1 4.2273 10.6039 1.0198 39 1 4.0539 8.7458 2.6628 40 1 2.3386 5.3077 1.0254 41 1 1.6290 5.1630 -0.6118 42 1 4.5450 1.2676 0.0109 43 1 0.8941 -2.5461 -0.5271 44 1 2.5873 -3.0948 -0.5198 45 1 0.7162 -5.9653 0.8294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363668416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:01 Heat of formation + Delta-G solvation = 73.989522 kcal Electronic energy + Delta-G solvation = -28546.740369 eV Core-core repulsion = 24565.329202 eV Total energy + Delta-G solvation = -3981.411167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.42127 -42.04775 -40.50884 -38.37022 -35.83808 -34.66271 -34.41573 -33.69310 -32.75249 -31.68283 -30.31639 -28.95616 -28.24180 -25.98958 -25.45904 -25.15710 -24.37015 -22.40257 -21.97547 -21.22530 -19.85970 -18.86871 -18.62821 -18.33273 -17.84445 -17.01363 -16.87343 -16.49658 -16.38679 -16.15256 -15.83045 -15.73711 -15.13561 -14.97456 -14.56441 -14.43335 -14.33763 -14.25834 -14.10143 -13.82141 -13.64340 -13.56821 -13.44194 -13.12655 -12.96116 -12.71520 -12.46697 -12.39972 -12.29085 -11.88518 -11.83313 -11.78057 -11.73561 -11.68838 -10.84909 -10.76001 -10.39323 -10.26902 -10.17721 -9.78292 -9.39366 -8.37939 -6.54249 -0.07157 0.19191 0.64891 1.31079 1.37380 1.38437 1.48697 1.63608 2.00902 2.32520 2.47415 2.73534 2.88997 2.94097 3.23192 3.50134 3.61419 3.73595 3.80684 3.83983 4.01101 4.07819 4.21091 4.24628 4.26345 4.30027 4.31545 4.44726 4.58227 4.63969 4.64799 4.75294 4.79214 4.85623 4.88978 4.95417 5.00787 5.06563 5.13588 5.22616 5.36367 5.48613 5.49162 5.66783 5.74767 6.03906 6.09679 6.49414 6.54697 6.81985 7.14328 7.16673 7.23265 8.69925 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026363 B = 0.002067 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.829505 B =13543.971115 C =13610.614723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.147 3.853 3 C -0.327 4.327 4 C 0.617 3.383 5 O -0.585 6.585 6 N -0.614 5.614 7 C 0.089 3.911 8 C -0.104 4.104 9 C -0.031 4.031 10 H 0.113 0.887 11 C 0.316 3.684 12 N -0.540 5.540 13 C 0.137 3.863 14 C -0.218 4.218 15 C 0.137 3.863 16 N -0.534 5.534 17 C 0.129 3.871 18 C 0.068 3.932 19 N -0.334 5.334 20 N -0.336 5.336 21 C 0.267 3.733 22 C -0.556 4.556 23 H 0.051 0.949 24 C 0.024 3.976 25 N -0.916 5.916 26 Si 0.972 3.028 27 H -0.267 1.267 28 H -0.273 1.273 29 H -0.274 1.274 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.198 0.802 38 H 0.185 0.815 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.230 0.770 43 H 0.051 0.949 44 H 0.033 0.967 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.920 30.224 -1.048 31.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.011 3.989 3 C -0.343 4.343 4 C 0.409 3.591 5 O -0.467 6.467 6 N -0.346 5.346 7 C -0.033 4.033 8 C -0.143 4.143 9 C -0.052 4.052 10 H 0.132 0.868 11 C 0.048 3.952 12 N -0.254 5.254 13 C -0.028 4.028 14 C -0.239 4.239 15 C -0.028 4.028 16 N -0.249 5.249 17 C 0.006 3.994 18 C -0.118 4.118 19 N -0.154 5.154 20 N -0.113 5.113 21 C 0.148 3.852 22 C -0.594 4.594 23 H 0.069 0.931 24 C -0.178 4.178 25 N -0.553 5.553 26 Si 0.795 3.205 27 H -0.192 1.192 28 H -0.198 1.198 29 H -0.199 1.199 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.128 0.872 36 H 0.105 0.895 37 H 0.214 0.786 38 H 0.202 0.798 39 H 0.212 0.788 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.246 0.754 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.797 27.929 -1.419 29.316 hybrid contribution -0.657 0.826 0.989 1.447 sum 8.140 28.755 -0.430 29.888 Atomic orbital electron populations 1.20578 0.85861 1.04201 1.04090 1.21928 0.95934 0.86638 0.94407 1.19815 0.93507 0.92522 1.28408 1.16820 0.84107 0.83347 0.74785 1.90677 1.17572 1.84482 1.53960 1.48059 1.07418 1.05456 1.73715 1.22601 0.78502 0.98844 1.03353 1.22693 0.97113 0.91307 1.03191 1.21039 0.95982 0.86614 1.01536 0.86845 1.22605 0.91850 0.95491 0.85302 1.68231 1.14673 1.02324 1.40219 1.23874 0.89258 0.93073 0.96623 1.23324 1.01941 1.03759 0.94861 1.23865 0.89152 0.87012 1.02801 1.68176 1.14545 1.24950 1.17188 1.22062 0.97097 0.79251 1.01020 1.25079 0.97964 0.91587 0.97185 1.77104 0.98309 1.14329 1.25609 1.49134 1.03392 1.07718 1.51088 1.19383 0.95335 0.72268 0.98174 1.21387 1.47974 0.98475 0.91541 0.93084 1.25734 0.93856 0.95936 1.02263 1.69998 1.44782 1.07662 1.32908 0.85346 0.78932 0.77657 0.78531 1.19160 1.19777 1.19883 0.89004 0.90981 0.88519 0.89046 0.89698 0.87176 0.89467 0.78553 0.79791 0.78800 0.91198 0.91699 0.75420 0.93166 0.94858 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.43 9.34 71.24 0.67 -2.77 16 2 C 0.15 6.30 7.01 42.14 0.30 6.60 16 3 C -0.33 -12.47 6.09 -20.15 -0.12 -12.59 16 4 C 0.62 21.96 7.85 86.66 0.68 22.64 16 5 O -0.58 -24.00 15.10 -4.07 -0.06 -24.06 16 6 N -0.61 -16.53 3.33 -815.51 -2.71 -19.25 16 7 C 0.09 1.66 4.98 86.73 0.43 2.09 16 8 C -0.10 -1.53 6.39 31.78 0.20 -1.32 16 9 C -0.03 -0.56 3.42 -10.14 -0.03 -0.59 16 10 H 0.11 2.00 8.13 -2.39 -0.02 1.98 16 11 C 0.32 5.85 6.56 138.75 0.91 6.76 16 12 N -0.54 -9.42 10.33 -187.85 -1.94 -11.36 16 13 C 0.14 1.40 11.30 84.70 0.96 2.36 16 14 C -0.22 -1.48 10.17 22.44 0.23 -1.25 16 15 C 0.14 1.46 11.31 84.70 0.96 2.42 16 16 N -0.53 -9.37 9.23 -187.85 -1.73 -11.11 16 17 C 0.13 3.10 6.35 86.86 0.55 3.65 16 18 C 0.07 2.38 10.45 85.65 0.89 3.27 16 19 N -0.33 -14.71 12.50 -56.27 -0.70 -15.41 16 20 N -0.34 -15.93 3.56 -336.70 -1.20 -17.13 16 21 C 0.27 14.00 5.78 85.63 0.49 14.49 16 22 C -0.56 -31.01 9.39 25.60 0.24 -30.77 16 23 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 24 C 0.02 1.29 5.46 84.66 0.46 1.75 16 25 N -0.92 -51.59 13.29 21.45 0.28 -51.30 16 26 Si 0.97 43.12 29.54 68.60 2.03 45.15 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 30 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 31 H 0.07 2.89 7.71 -2.39 -0.02 2.87 16 32 H 0.10 3.67 6.51 -2.39 -0.02 3.65 16 33 H 0.09 1.49 6.83 -2.38 -0.02 1.48 16 34 H 0.08 1.52 7.00 -2.39 -0.02 1.51 16 35 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.09 1.34 7.62 -2.38 -0.02 1.32 16 37 H 0.20 0.63 8.06 -2.91 -0.02 0.61 16 38 H 0.18 -0.18 8.06 -2.91 -0.02 -0.20 16 39 H 0.20 0.84 8.06 -2.91 -0.02 0.81 16 40 H 0.07 1.79 7.57 -2.39 -0.02 1.77 16 41 H 0.06 1.73 8.04 -2.39 -0.02 1.71 16 42 H 0.23 5.54 4.47 -2.91 -0.01 5.53 16 43 H 0.05 2.64 7.64 -2.39 -0.02 2.62 16 44 H 0.03 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -75.23 376.27 2.80 -72.43 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 1.03 Total: 15.30 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 7.82 Total: 16.74 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -8.00 Total: -125.56 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.06 Total: -24.06 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -75.23 2.80 -72.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363668416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.415 kcal (2) G-P(sol) polarization free energy of solvation -75.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds