Wall clock time and date at job start Sat Apr 11 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38348 * 120.45054 * 2 1 4 4 C 1.38840 * 118.50439 * 180.26665 * 3 2 1 5 5 S 1.76198 * 120.33554 * 179.73394 * 4 3 2 6 6 O 1.42100 * 106.40236 * 31.27070 * 5 4 3 7 7 O 1.42096 * 106.40582 * 164.19379 * 5 4 3 8 8 N 1.65602 * 107.21531 * 277.73391 * 5 4 3 9 9 C 1.46498 * 120.00447 * 80.20815 * 8 5 4 10 10 C 1.50706 * 109.47291 * 93.09636 * 9 8 5 11 11 H 1.08008 * 119.99398 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00234 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99840 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99868 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47240 * 90.00042 * 14 12 10 16 16 H 1.48499 * 109.46746 * 209.99741 * 14 12 10 17 17 H 1.48502 * 109.47283 * 329.99943 * 14 12 10 18 18 C 1.46499 * 119.99660 * 260.20424 * 8 5 4 19 19 C 1.53007 * 109.47003 * 100.50824 * 18 8 5 20 20 C 1.53001 * 109.46907 * 64.53560 * 19 18 8 21 21 C 1.53000 * 109.47355 * 184.53598 * 19 18 8 22 22 C 1.53001 * 109.47029 * 304.53835 * 19 18 8 23 23 C 1.38062 * 119.32830 * 359.45298 * 4 3 2 24 24 N 1.31944 * 120.85204 * 0.25986 * 23 4 3 25 25 C 1.32421 * 121.62908 * 0.02562 * 24 23 4 26 26 N 1.39004 * 119.71036 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.46664 * 270.30225 * 1 2 3 28 28 H 1.09000 * 109.46798 * 30.30107 * 1 2 3 29 29 H 1.08994 * 109.46844 * 150.30590 * 1 2 3 30 30 H 1.07999 * 120.74666 * 359.97438 * 3 2 1 31 31 H 1.08997 * 109.47640 * 213.09924 * 9 8 5 32 32 H 1.09006 * 109.46897 * 333.10271 * 9 8 5 33 33 H 0.96996 * 119.99511 * 179.97438 * 13 12 10 34 34 H 1.08999 * 109.47216 * 220.50374 * 18 8 5 35 35 H 1.08999 * 109.47515 * 340.51064 * 18 8 5 36 36 H 1.08995 * 109.47022 * 49.40728 * 20 19 18 37 37 H 1.09004 * 109.46942 * 169.40654 * 20 19 18 38 38 H 1.09003 * 109.47039 * 289.40655 * 20 19 18 39 39 H 1.09002 * 109.46896 * 59.99772 * 21 19 18 40 40 H 1.08996 * 109.46860 * 179.97438 * 21 19 18 41 41 H 1.08992 * 109.47040 * 300.00241 * 21 19 18 42 42 H 1.09004 * 109.47112 * 71.03950 * 22 19 18 43 43 H 1.09001 * 109.46998 * 191.04037 * 22 19 18 44 44 H 1.09004 * 109.47053 * 311.04489 * 22 19 18 45 45 H 1.07995 * 119.57398 * 180.27664 * 23 4 3 46 46 H 0.97000 * 119.99847 * 359.97438 * 26 25 24 47 47 H 0.96996 * 119.99974 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1926 0.0000 4 6 3.5958 1.1455 -0.0057 5 16 4.5368 2.6351 -0.0130 6 8 3.7690 3.5983 0.6956 7 8 5.8615 2.2748 0.3536 8 7 4.6120 3.1596 -1.5820 9 6 3.4811 3.8838 -2.1674 10 6 3.6915 5.3664 -1.9970 11 1 4.5792 5.7324 -1.5025 12 6 2.7509 6.2553 -2.4724 13 7 1.6698 5.8095 -3.0741 14 14 3.0122 8.0929 -2.2618 15 1 3.7472 8.6263 -3.4367 16 1 1.6954 8.7707 -2.1523 17 1 3.8015 8.3427 -1.0290 18 6 5.8097 2.8994 -2.3846 19 6 5.5565 1.7043 -3.3058 20 6 4.4546 2.0567 -4.3072 21 6 6.8418 1.3615 -4.0616 22 6 5.1196 0.4996 -2.4699 23 6 4.2308 -0.0804 0.0004 24 7 3.5362 -1.2022 0.0063 25 6 2.2120 -1.1991 0.0062 26 7 1.5202 -2.4047 0.0131 27 1 -0.3632 0.0054 1.0277 28 1 -0.3633 0.8873 -0.5185 29 1 -0.3633 -0.8927 -0.5091 30 1 1.6878 2.1390 -0.0004 31 1 3.4080 3.6469 -3.2287 32 1 2.5604 3.5875 -1.6646 33 1 1.0079 6.4349 -3.4081 34 1 6.0424 3.7785 -2.9856 35 1 6.6484 2.6780 -1.7246 36 1 4.6780 3.0181 -4.7697 37 1 4.4031 1.2865 -5.0767 38 1 3.4978 2.1167 -3.7884 39 1 7.6268 1.1105 -3.3482 40 1 6.6615 0.5099 -4.7175 41 1 7.1530 2.2198 -4.6570 42 1 4.1121 0.6676 -2.0892 43 1 5.1287 -0.3961 -3.0910 44 1 5.8068 0.3690 -1.6339 45 1 5.3099 -0.1217 0.0005 46 1 2.0075 -3.2435 0.0176 47 1 0.5503 -2.4074 0.0134 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363982667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:04 Heat of formation + Delta-G solvation = -37.290460 kcal Electronic energy + Delta-G solvation = -30157.403729 eV Core-core repulsion = 26274.318300 eV Total energy + Delta-G solvation = -3883.085429 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.37764 -38.03687 -36.54423 -35.21860 -35.07977 -34.01219 -33.47013 -32.14933 -30.30150 -27.87795 -27.62467 -26.77236 -26.47266 -24.89757 -23.23253 -22.49023 -22.13042 -18.89701 -18.12875 -17.78292 -17.66546 -17.07788 -16.59305 -16.13140 -15.50809 -15.15624 -14.84229 -14.44880 -14.26729 -14.11363 -14.00402 -13.63993 -13.20215 -13.01110 -12.89100 -12.78767 -12.48940 -12.35633 -12.19687 -11.93785 -11.70672 -11.45881 -11.41712 -11.33407 -11.20193 -11.11285 -10.98330 -10.86262 -10.69899 -10.66584 -10.46496 -10.19460 -10.02772 -9.86050 -9.67319 -9.55560 -9.42069 -8.39351 -8.06119 -7.90655 -6.03524 -4.05513 0.92187 1.20510 1.36570 3.28745 3.33761 3.40363 3.46900 3.58372 3.89816 4.40079 4.48544 4.53204 4.75095 4.88021 5.07092 5.13697 5.18044 5.21819 5.30988 5.31935 5.34420 5.52300 5.68668 5.74251 5.84631 5.89156 5.93943 5.97282 6.03052 6.06447 6.10142 6.21298 6.28064 6.32142 6.43038 6.50850 6.51958 6.62563 6.69621 6.88574 7.03220 7.17519 7.27701 7.43737 7.65745 7.95166 8.04494 8.24872 8.96679 9.58826 11.04786 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011019 B = 0.005079 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.462429 B = 5512.028646 C = 6449.806541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.227 4.227 3 C 0.066 3.934 4 C -0.781 4.781 5 S 2.693 3.307 6 O -0.945 6.945 7 O -0.981 6.981 8 N -0.977 5.977 9 C 0.245 3.755 10 C -0.521 4.521 11 H 0.061 0.939 12 C 0.062 3.938 13 N -0.898 5.898 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.272 1.272 18 C 0.131 3.869 19 C -0.086 4.086 20 C -0.140 4.140 21 C -0.137 4.137 22 C -0.163 4.163 23 C 0.249 3.751 24 N -0.556 5.556 25 C 0.440 3.560 26 N -0.845 5.845 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.150 0.850 31 H 0.057 0.943 32 H 0.029 0.971 33 H 0.262 0.738 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.040 0.960 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.172 0.828 46 H 0.404 0.596 47 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.802 -15.612 1.265 15.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.235 4.235 3 C 0.040 3.960 4 C -0.871 4.871 5 S 2.781 3.219 6 O -0.935 6.935 7 O -0.972 6.972 8 N -0.815 5.815 9 C 0.123 3.877 10 C -0.560 4.560 11 H 0.079 0.921 12 C -0.139 4.139 13 N -0.538 5.538 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.197 1.197 18 C 0.005 3.995 19 C -0.088 4.088 20 C -0.197 4.197 21 C -0.195 4.195 22 C -0.220 4.220 23 C 0.089 3.911 24 N -0.274 5.274 25 C 0.202 3.798 26 N -0.388 5.388 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.168 0.832 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.188 0.812 46 H 0.233 0.767 47 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.366 -15.956 1.912 16.128 hybrid contribution -1.100 0.847 -0.336 1.428 sum 0.266 -15.109 1.576 15.193 Atomic orbital electron populations 1.20573 0.90104 1.02995 1.02220 1.20144 0.97231 0.92417 1.13661 1.21020 0.91602 0.98573 0.84797 1.31945 1.08249 1.21668 1.25199 1.01966 0.73164 0.73219 0.73560 1.93598 1.72097 1.57206 1.70573 1.93467 1.36262 1.84936 1.82494 1.57340 1.25271 1.68219 1.30685 1.19390 0.81453 0.90829 0.96019 1.21514 1.06278 0.91097 1.37134 0.92085 1.24883 0.94956 0.99005 0.95103 1.69911 1.09890 1.34760 1.39246 0.86562 0.77533 0.85180 0.78593 1.20743 1.21226 1.19671 1.21362 0.86787 0.97302 0.94094 1.21003 0.95893 0.95724 0.96176 1.22052 0.99046 1.00737 0.97875 1.21810 0.96771 1.01132 0.99803 1.22548 1.01692 0.97712 1.00075 1.22227 0.99675 0.85369 0.83867 1.67288 1.05804 1.31494 1.22839 1.18359 0.88601 0.86141 0.86694 1.42405 1.09225 1.05188 1.82026 0.91358 0.90476 0.92201 0.83195 0.92530 0.95333 0.92841 0.89657 0.89964 0.92045 0.94125 0.91176 0.92688 0.92988 0.92494 0.91730 0.92761 0.92354 0.81151 0.76661 0.75959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 9.59 36.01 0.35 -0.69 16 2 C -0.23 -3.09 5.92 -104.26 -0.62 -3.71 16 3 C 0.07 1.07 9.33 -39.32 -0.37 0.70 16 4 C -0.78 -13.20 4.05 -39.42 -0.16 -13.36 16 5 S 2.69 53.43 5.13 -107.50 -0.55 52.88 16 6 O -0.94 -22.33 16.95 -57.17 -0.97 -23.30 16 7 O -0.98 -19.51 15.49 -57.17 -0.89 -20.40 16 8 N -0.98 -19.44 2.18 -115.66 -0.25 -19.69 16 9 C 0.24 5.73 4.39 -5.19 -0.02 5.71 16 10 C -0.52 -14.03 9.39 -34.44 -0.32 -14.35 16 11 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 13 N -0.90 -25.22 13.29 55.43 0.74 -24.49 16 14 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.13 2.24 4.75 -4.04 -0.02 2.22 16 19 C -0.09 -1.26 0.85 -154.50 -0.13 -1.39 16 20 C -0.14 -2.20 7.01 37.16 0.26 -1.94 16 21 C -0.14 -1.67 8.43 37.16 0.31 -1.35 16 22 C -0.16 -2.33 5.80 37.16 0.22 -2.11 16 23 C 0.25 3.84 7.41 -17.57 -0.13 3.71 16 24 N -0.56 -8.10 10.39 -12.44 -0.13 -8.23 16 25 C 0.44 5.76 7.73 -155.01 -1.20 4.56 16 26 N -0.85 -7.43 8.98 31.12 0.28 -7.15 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 29 H 0.06 0.47 6.57 -51.93 -0.34 0.13 16 30 H 0.15 2.50 7.78 -52.49 -0.41 2.09 16 31 H 0.06 1.32 4.63 -51.93 -0.24 1.08 16 32 H 0.03 0.71 7.83 -51.93 -0.41 0.30 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 35 H 0.08 1.33 6.75 -51.93 -0.35 0.98 16 36 H 0.06 1.02 7.88 -51.93 -0.41 0.61 16 37 H 0.04 0.56 8.11 -51.93 -0.42 0.14 16 38 H 0.07 1.23 5.83 -51.93 -0.30 0.93 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 1.00 4.64 -51.93 -0.24 0.76 16 43 H 0.05 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.06 0.80 5.95 -51.93 -0.31 0.49 16 45 H 0.17 2.41 5.99 -52.49 -0.31 2.10 16 46 H 0.40 2.99 8.95 -40.82 -0.37 2.63 16 47 H 0.41 2.59 6.81 -40.82 -0.28 2.32 16 LS Contribution 374.10 15.07 5.64 5.64 Total: -1.00 -32.51 374.10 -9.97 -42.49 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.89 Total: 6.21 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -1.93 Total: -20.41 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.63 Total: -59.56 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -1.85 Total: -43.70 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 53.43 SS G_CDS: -0.55 Total: 52.88 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.51 -9.97 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363982667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.196 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds