Wall clock time and date at job start Sat Apr 11 2020 06:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38348 * 120.45054 * 2 1 4 4 C 1.38840 * 118.50439 * 180.26665 * 3 2 1 5 5 S 1.76198 * 120.33554 * 179.73394 * 4 3 2 6 6 O 1.42100 * 106.40236 * 31.27070 * 5 4 3 7 7 O 1.42096 * 106.40582 * 164.19379 * 5 4 3 8 8 N 1.65602 * 107.21531 * 277.73391 * 5 4 3 9 9 C 1.46498 * 120.00447 * 80.20815 * 8 5 4 10 10 C 1.50706 * 109.47291 * 93.09636 * 9 8 5 11 11 H 1.08008 * 119.99398 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00234 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99840 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99868 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47240 * 90.00042 * 14 12 10 16 16 H 1.48499 * 109.46746 * 209.99741 * 14 12 10 17 17 H 1.48502 * 109.47283 * 329.99943 * 14 12 10 18 18 C 1.46499 * 119.99660 * 260.20424 * 8 5 4 19 19 C 1.53007 * 109.47003 * 100.50824 * 18 8 5 20 20 C 1.53001 * 109.46907 * 64.53560 * 19 18 8 21 21 C 1.53000 * 109.47355 * 184.53598 * 19 18 8 22 22 C 1.53001 * 109.47029 * 304.53835 * 19 18 8 23 23 C 1.38062 * 119.32830 * 359.45298 * 4 3 2 24 24 N 1.31944 * 120.85204 * 0.25986 * 23 4 3 25 25 C 1.32421 * 121.62908 * 0.02562 * 24 23 4 26 26 N 1.39004 * 119.71036 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.46664 * 270.30225 * 1 2 3 28 28 H 1.09000 * 109.46798 * 30.30107 * 1 2 3 29 29 H 1.08994 * 109.46844 * 150.30590 * 1 2 3 30 30 H 1.07999 * 120.74666 * 359.97438 * 3 2 1 31 31 H 1.08997 * 109.47640 * 213.09924 * 9 8 5 32 32 H 1.09006 * 109.46897 * 333.10271 * 9 8 5 33 33 H 0.96996 * 119.99511 * 179.97438 * 13 12 10 34 34 H 1.08999 * 109.47216 * 220.50374 * 18 8 5 35 35 H 1.08999 * 109.47515 * 340.51064 * 18 8 5 36 36 H 1.08995 * 109.47022 * 49.40728 * 20 19 18 37 37 H 1.09004 * 109.46942 * 169.40654 * 20 19 18 38 38 H 1.09003 * 109.47039 * 289.40655 * 20 19 18 39 39 H 1.09002 * 109.46896 * 59.99772 * 21 19 18 40 40 H 1.08996 * 109.46860 * 179.97438 * 21 19 18 41 41 H 1.08992 * 109.47040 * 300.00241 * 21 19 18 42 42 H 1.09004 * 109.47112 * 71.03950 * 22 19 18 43 43 H 1.09001 * 109.46998 * 191.04037 * 22 19 18 44 44 H 1.09004 * 109.47053 * 311.04489 * 22 19 18 45 45 H 1.07995 * 119.57398 * 180.27664 * 23 4 3 46 46 H 0.97000 * 119.99847 * 359.97438 * 26 25 24 47 47 H 0.96996 * 119.99974 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1926 0.0000 4 6 3.5958 1.1455 -0.0057 5 16 4.5368 2.6351 -0.0130 6 8 3.7690 3.5983 0.6956 7 8 5.8615 2.2748 0.3536 8 7 4.6120 3.1596 -1.5820 9 6 3.4811 3.8838 -2.1674 10 6 3.6915 5.3664 -1.9970 11 1 4.5792 5.7324 -1.5025 12 6 2.7509 6.2553 -2.4724 13 7 1.6698 5.8095 -3.0741 14 14 3.0122 8.0929 -2.2618 15 1 3.7472 8.6263 -3.4367 16 1 1.6954 8.7707 -2.1523 17 1 3.8015 8.3427 -1.0290 18 6 5.8097 2.8994 -2.3846 19 6 5.5565 1.7043 -3.3058 20 6 4.4546 2.0567 -4.3072 21 6 6.8418 1.3615 -4.0616 22 6 5.1196 0.4996 -2.4699 23 6 4.2308 -0.0804 0.0004 24 7 3.5362 -1.2022 0.0063 25 6 2.2120 -1.1991 0.0062 26 7 1.5202 -2.4047 0.0131 27 1 -0.3632 0.0054 1.0277 28 1 -0.3633 0.8873 -0.5185 29 1 -0.3633 -0.8927 -0.5091 30 1 1.6878 2.1390 -0.0004 31 1 3.4080 3.6469 -3.2287 32 1 2.5604 3.5875 -1.6646 33 1 1.0079 6.4349 -3.4081 34 1 6.0424 3.7785 -2.9856 35 1 6.6484 2.6780 -1.7246 36 1 4.6780 3.0181 -4.7697 37 1 4.4031 1.2865 -5.0767 38 1 3.4978 2.1167 -3.7884 39 1 7.6268 1.1105 -3.3482 40 1 6.6615 0.5099 -4.7175 41 1 7.1530 2.2198 -4.6570 42 1 4.1121 0.6676 -2.0892 43 1 5.1287 -0.3961 -3.0910 44 1 5.8068 0.3690 -1.6339 45 1 5.3099 -0.1217 0.0005 46 1 2.0075 -3.2435 0.0176 47 1 0.5503 -2.4074 0.0134 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363982667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:03 Heat of formation + Delta-G solvation = -59.865072 kcal Electronic energy + Delta-G solvation = -30158.382638 eV Core-core repulsion = 26274.318300 eV Total energy + Delta-G solvation = -3884.064337 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.49173 -39.37586 -38.19064 -36.79091 -36.20792 -35.65855 -34.55464 -34.03952 -31.36328 -29.55363 -28.74573 -27.99748 -27.58496 -26.51267 -24.38728 -23.98525 -23.60449 -20.20372 -19.54359 -18.95421 -18.78059 -18.60718 -18.26871 -17.80529 -17.04657 -16.43985 -16.13809 -15.97261 -15.61555 -15.33058 -15.16620 -14.92195 -14.46240 -14.35459 -14.14973 -14.11255 -13.96280 -13.73986 -13.29486 -13.17785 -13.10406 -13.02198 -12.92292 -12.88922 -12.70406 -12.55458 -12.48730 -12.38773 -12.22861 -12.05628 -12.01919 -11.63566 -11.50951 -11.36555 -11.31358 -10.71589 -10.64368 -10.45660 -9.58723 -9.04017 -8.13012 -6.21617 -0.46710 -0.13034 0.18894 1.40902 1.43210 1.53732 2.14636 2.38877 2.46105 2.61925 2.91412 3.17911 3.38557 3.46255 3.79837 3.89875 3.93366 3.98139 4.05636 4.14731 4.34860 4.37766 4.53512 4.67779 4.74309 4.76813 4.77801 4.82483 4.99094 5.00968 5.04228 5.07774 5.08349 5.13937 5.17235 5.25970 5.30471 5.41840 5.47165 5.52346 5.63721 5.64078 5.79134 6.03931 6.14499 6.21950 6.31055 6.85321 7.08046 7.45204 8.93738 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011019 B = 0.005079 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.462429 B = 5512.028646 C = 6449.806541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.223 4.223 3 C 0.042 3.958 4 C -0.786 4.786 5 S 2.698 3.302 6 O -0.995 6.995 7 O -0.987 6.987 8 N -0.980 5.980 9 C 0.261 3.739 10 C -0.539 4.539 11 H 0.048 0.952 12 C 0.017 3.983 13 N -0.923 5.923 14 Si 0.947 3.053 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.277 1.277 18 C 0.123 3.877 19 C -0.081 4.081 20 C -0.135 4.135 21 C -0.133 4.133 22 C -0.161 4.161 23 C 0.254 3.746 24 N -0.559 5.559 25 C 0.442 3.558 26 N -0.819 5.819 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.132 0.868 31 H 0.058 0.942 32 H 0.010 0.990 33 H 0.265 0.735 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.182 0.818 46 H 0.416 0.584 47 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.769 -18.137 0.769 18.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.231 4.231 3 C 0.016 3.984 4 C -0.881 4.881 5 S 2.791 3.209 6 O -0.985 6.985 7 O -0.977 6.977 8 N -0.818 5.818 9 C 0.138 3.862 10 C -0.578 4.578 11 H 0.067 0.933 12 C -0.183 4.183 13 N -0.563 5.563 14 Si 0.773 3.227 15 H -0.193 1.193 16 H -0.206 1.206 17 H -0.203 1.203 18 C -0.003 4.003 19 C -0.083 4.083 20 C -0.192 4.192 21 C -0.190 4.190 22 C -0.218 4.218 23 C 0.092 3.908 24 N -0.278 5.278 25 C 0.201 3.799 26 N -0.363 5.363 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.150 0.850 31 H 0.075 0.925 32 H 0.028 0.972 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.199 0.801 46 H 0.247 0.753 47 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 1.343 -18.484 1.406 18.586 hybrid contribution -1.160 1.457 -0.147 1.868 sum 0.183 -17.027 1.259 17.074 Atomic orbital electron populations 1.20687 0.87673 1.04099 1.03555 1.20429 0.98956 0.91573 1.12152 1.20999 0.91627 0.99153 0.86634 1.31262 1.08180 1.20233 1.28403 1.01343 0.72908 0.73609 0.73014 1.93530 1.73051 1.59996 1.71893 1.93441 1.36646 1.85117 1.82528 1.57170 1.25250 1.68679 1.30665 1.18992 0.81932 0.89418 0.95835 1.21848 1.05902 0.93228 1.36838 0.93337 1.25580 0.94849 1.02820 0.95005 1.69991 1.10431 1.35973 1.39907 0.85724 0.77628 0.80807 0.78572 1.19340 1.20576 1.20253 1.21601 0.85953 0.98298 0.94423 1.20953 0.96952 0.94758 0.95617 1.21966 0.98184 1.00711 0.98371 1.21779 0.95363 1.01898 1.00007 1.22521 1.00951 0.97980 1.00397 1.22344 1.00223 0.84931 0.83293 1.67375 1.06465 1.30617 1.23357 1.18590 0.88382 0.87324 0.85558 1.42392 1.10070 1.04194 1.79598 0.89775 0.91386 0.89177 0.85016 0.92451 0.97245 0.92614 0.90580 0.89045 0.93539 0.91978 0.93639 0.91595 0.91333 0.92247 0.93195 0.91054 0.91854 0.80143 0.75306 0.74188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 9.59 71.24 0.68 -1.21 16 2 C -0.22 -5.80 5.92 -19.63 -0.12 -5.92 16 3 C 0.04 1.40 9.33 22.44 0.21 1.61 16 4 C -0.79 -27.06 4.05 22.37 0.09 -26.97 16 5 S 2.70 111.54 5.13 -56.49 -0.29 111.25 16 6 O -0.99 -49.92 16.95 -128.00 -2.17 -52.09 16 7 O -0.99 -39.94 15.49 -128.00 -1.98 -41.92 16 8 N -0.98 -40.62 2.18 -519.83 -1.13 -41.75 16 9 C 0.26 12.87 4.39 85.64 0.38 13.25 16 10 C -0.54 -30.18 9.39 25.60 0.24 -29.94 16 11 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 12 C 0.02 0.93 5.46 84.65 0.46 1.39 16 13 N -0.92 -53.03 13.29 21.45 0.28 -52.75 16 14 Si 0.95 44.77 29.54 68.60 2.03 46.79 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 18 C 0.12 4.25 4.75 86.38 0.41 4.66 16 19 C -0.08 -2.31 0.85 -52.18 -0.04 -2.35 16 20 C -0.14 -4.23 7.01 71.98 0.50 -3.73 16 21 C -0.13 -2.93 8.43 71.98 0.61 -2.32 16 22 C -0.16 -4.39 5.80 71.98 0.42 -3.97 16 23 C 0.25 7.57 7.41 84.63 0.63 8.19 16 24 N -0.56 -15.10 10.39 -193.27 -2.01 -17.11 16 25 C 0.44 10.45 7.73 133.05 1.03 11.48 16 26 N -0.82 -11.26 8.98 -55.44 -0.50 -11.76 16 27 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 29 H 0.09 1.08 6.57 -2.39 -0.02 1.07 16 30 H 0.13 4.77 7.78 -2.91 -0.02 4.75 16 31 H 0.06 2.81 4.63 -2.39 -0.01 2.80 16 32 H 0.01 0.51 7.83 -2.38 -0.02 0.49 16 33 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16 35 H 0.09 2.97 6.75 -2.39 -0.02 2.95 16 36 H 0.05 1.56 7.88 -2.39 -0.02 1.54 16 37 H 0.06 1.64 8.11 -2.39 -0.02 1.62 16 38 H 0.04 1.64 5.83 -2.39 -0.01 1.62 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.05 1.52 4.64 -2.38 -0.01 1.51 16 43 H 0.07 1.68 8.10 -2.39 -0.02 1.66 16 44 H 0.06 1.64 5.95 -2.38 -0.01 1.63 16 45 H 0.18 4.89 5.99 -2.91 -0.02 4.87 16 46 H 0.42 4.45 8.95 -92.71 -0.83 3.62 16 47 H 0.42 3.52 6.81 -92.71 -0.63 2.88 16 Total: -1.00 -71.87 374.10 -0.72 -72.59 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -0.45 Total: 22.58 kcal Atomic # 6 Polarization: -41.33 SS G_CDS: 5.50 Total: -35.84 kcal Atomic # 7 Polarization: -120.01 SS G_CDS: -3.36 Total: -123.37 kcal Atomic # 8 Polarization: -89.86 SS G_CDS: -4.15 Total: -94.01 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: 111.54 SS G_CDS: -0.29 Total: 111.25 kcal Total: -71.87 -0.72 -72.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363982667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.726 kcal (2) G-P(sol) polarization free energy of solvation -71.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds