Wall clock time and date at job start Sat Apr 11 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38036 * 126.29211 * 2 1 4 4 C 1.47430 * 126.41617 * 0.02562 * 3 2 1 5 5 O 1.21606 * 119.99827 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00234 * 179.97438 * 4 3 2 7 7 C 1.47021 * 125.64649 * 359.68690 * 6 4 3 8 8 C 1.54335 * 107.26502 * 178.85252 * 7 6 4 9 9 C 1.55157 * 103.02054 * 338.14323 * 8 7 6 10 10 H 1.09006 * 111.00028 * 277.23204 * 9 8 7 11 11 C 1.50702 * 111.00391 * 153.38356 * 9 8 7 12 12 C 1.38389 * 119.99729 * 281.34597 * 11 9 8 13 13 N 1.32123 * 119.99321 * 179.97438 * 12 11 9 14 14 C 1.32149 * 120.00630 * 359.97438 * 13 12 11 15 15 C 1.38347 * 119.99690 * 0.02562 * 14 13 12 16 16 N 1.32116 * 120.00199 * 101.07270 * 11 9 8 17 17 C 1.47424 * 125.65104 * 179.97438 * 6 4 3 18 18 C 1.41294 * 107.17120 * 179.97438 * 3 2 1 19 19 N 1.30440 * 108.02337 * 0.02562 * 18 3 2 20 20 N 1.34264 * 126.29134 * 179.97438 * 2 1 3 21 21 C 1.46498 * 125.75124 * 359.75430 * 20 2 1 22 22 C 1.50704 * 109.47330 * 90.00344 * 21 20 2 23 23 H 1.07999 * 119.99597 * 359.97438 * 22 21 20 24 24 C 1.37876 * 120.00001 * 180.02562 * 22 21 20 25 25 N 1.31517 * 120.00082 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99888 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47127 * 89.99472 * 26 24 22 28 28 H 1.48495 * 109.46905 * 209.99651 * 26 24 22 29 29 H 1.48507 * 109.46876 * 329.99500 * 26 24 22 30 30 H 1.08998 * 109.46868 * 269.99473 * 1 2 3 31 31 H 1.08994 * 109.47041 * 29.99372 * 1 2 3 32 32 H 1.09000 * 109.47478 * 149.99697 * 1 2 3 33 33 H 1.09001 * 109.88396 * 298.39640 * 7 6 4 34 34 H 1.09002 * 109.88338 * 59.56109 * 7 6 4 35 35 H 1.09002 * 110.84996 * 219.66894 * 8 7 6 36 36 H 1.09004 * 110.51263 * 96.45435 * 8 7 6 37 37 H 1.08000 * 120.00105 * 359.95458 * 12 11 9 38 38 H 1.07996 * 120.00745 * 180.02562 * 14 13 12 39 39 H 1.08007 * 119.99845 * 179.97438 * 15 14 13 40 40 H 1.09003 * 110.36085 * 322.92668 * 17 6 4 41 41 H 1.09002 * 110.36699 * 85.13466 * 17 6 4 42 42 H 1.08002 * 125.98920 * 179.97438 * 18 3 2 43 43 H 1.09001 * 109.47019 * 210.00203 * 21 20 2 44 44 H 1.08997 * 109.47542 * 329.99596 * 21 20 2 45 45 H 0.96998 * 119.99721 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6995 2.7877 0.0006 6 7 2.7999 3.5107 0.0010 7 6 4.2590 3.3300 0.0075 8 6 4.8948 4.7359 -0.0240 9 6 3.7613 5.6191 -0.6093 10 1 3.7440 5.5621 -1.6977 11 6 3.8962 7.0473 -0.1475 12 6 3.4813 7.4057 1.1232 13 7 3.6001 8.6577 1.5281 14 6 4.1155 9.5675 0.7202 15 6 4.5303 9.2091 -0.5501 16 7 4.4156 7.9560 -0.9537 17 6 2.5024 4.9546 0.0010 18 6 3.6590 0.6498 0.0006 19 7 3.6340 -0.6544 0.0004 20 7 2.3017 -1.0822 0.0005 21 6 1.8500 -2.4758 0.0062 22 6 1.6903 -2.9580 -1.4127 23 1 1.9035 -2.2927 -2.2362 24 6 1.2710 -4.2481 -1.6592 25 7 1.0109 -5.0581 -0.6563 26 14 1.0724 -4.8455 -3.4180 27 1 2.3514 -5.4358 -3.8877 28 1 0.0026 -5.8740 -3.4735 29 1 0.7050 -3.7016 -4.2908 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3633 0.8900 -0.5137 32 1 -0.3634 -0.8899 -0.5139 33 1 4.5633 2.8036 0.9122 34 1 4.5667 2.7661 -0.8731 35 1 5.7701 4.7514 -0.6734 36 1 5.1550 5.0601 0.9836 37 1 3.0601 6.6621 1.7835 38 1 4.2130 10.5909 1.0513 39 1 4.9512 9.9528 -1.2106 40 1 1.6275 5.1615 -0.6154 41 1 2.3405 5.3085 1.0192 42 1 4.5449 1.2675 0.0004 43 1 2.5864 -3.0943 0.5194 44 1 0.8932 -2.5456 0.5236 45 1 0.7163 -5.9658 -0.8298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364975918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:19 Heat of formation + Delta-G solvation = 94.818234 kcal Electronic energy + Delta-G solvation = -28557.192174 eV Core-core repulsion = 24576.684208 eV Total energy + Delta-G solvation = -3980.507966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.65729 -40.86976 -39.46519 -37.34588 -34.77370 -33.98361 -33.28236 -32.06052 -31.17638 -30.66772 -29.24391 -27.32705 -26.70660 -25.25091 -24.79042 -23.58743 -23.39270 -21.23650 -21.05943 -19.93697 -18.45313 -18.06131 -17.60013 -16.99753 -16.72512 -16.46685 -15.71229 -15.46405 -15.21012 -15.04517 -14.61027 -14.54149 -14.13785 -13.95116 -13.65244 -13.46489 -13.00221 -12.81725 -12.63434 -12.53550 -12.38301 -12.10826 -12.07523 -11.99500 -11.83061 -11.49919 -11.45390 -11.38063 -11.17732 -11.10479 -10.89784 -10.37518 -10.18843 -9.94297 -9.63664 -9.48133 -9.43409 -8.71956 -8.70122 -8.54353 -7.92537 -6.34366 -4.42343 0.31261 0.70572 2.15421 2.78747 2.90781 3.17911 3.21732 3.24324 3.27270 3.40358 3.55349 3.82921 3.85782 4.00274 4.17929 4.23698 4.25742 4.44857 4.61624 4.80288 4.90088 4.92949 4.98573 5.00294 5.12725 5.18503 5.21159 5.38526 5.43440 5.51794 5.60072 5.68834 5.76200 5.80412 5.87263 5.91645 6.09308 6.28459 6.51701 6.58214 6.78727 6.84802 6.89427 7.15789 7.34812 7.55436 7.62583 7.76342 7.78051 8.36179 8.52433 8.63643 9.24709 10.73755 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027983 B = 0.002056 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.362213 B =13614.020505 C =13753.941270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.167 3.833 3 C -0.329 4.329 4 C 0.621 3.379 5 O -0.552 6.552 6 N -0.621 5.621 7 C 0.097 3.903 8 C -0.120 4.120 9 C -0.053 4.053 10 H 0.110 0.890 11 C 0.098 3.902 12 C 0.053 3.947 13 N -0.434 5.434 14 C 0.041 3.959 15 C 0.054 3.946 16 N -0.435 5.435 17 C 0.117 3.883 18 C 0.045 3.955 19 N -0.296 5.296 20 N -0.313 5.313 21 C 0.251 3.749 22 C -0.540 4.540 23 H 0.065 0.935 24 C 0.067 3.933 25 N -0.889 5.889 26 Si 0.908 3.092 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.271 1.271 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.173 0.827 38 H 0.170 0.830 39 H 0.171 0.829 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.185 0.815 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.242 25.461 2.800 26.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.029 3.971 3 C -0.345 4.345 4 C 0.415 3.585 5 O -0.431 6.431 6 N -0.356 5.356 7 C -0.026 4.026 8 C -0.159 4.159 9 C -0.073 4.073 10 H 0.128 0.872 11 C -0.042 4.042 12 C -0.107 4.107 13 N -0.148 5.148 14 C -0.119 4.119 15 C -0.106 4.106 16 N -0.150 5.150 17 C -0.007 4.007 18 C -0.142 4.142 19 N -0.116 5.116 20 N -0.090 5.090 21 C 0.133 3.867 22 C -0.579 4.579 23 H 0.084 0.916 24 C -0.137 4.137 25 N -0.526 5.526 26 Si 0.735 3.265 27 H -0.202 1.202 28 H -0.208 1.208 29 H -0.196 1.196 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.190 0.810 38 H 0.187 0.813 39 H 0.188 0.812 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.202 0.798 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.169 24.066 2.864 25.274 hybrid contribution -0.311 0.393 -0.934 1.060 sum 6.858 24.459 1.930 25.475 Atomic orbital electron populations 1.20616 0.86825 1.04869 1.03294 1.21458 0.94953 0.86468 0.94186 1.19551 0.93235 0.92074 1.29591 1.16980 0.83971 0.83210 0.74388 1.90707 1.16151 1.84060 1.52158 1.48065 1.06276 1.05243 1.75985 1.22360 0.80637 0.96976 1.02641 1.22761 0.97559 0.93442 1.02101 1.21212 0.96226 0.87456 1.02422 0.87208 1.21879 0.94685 0.95942 0.91736 1.23740 0.97317 0.94164 0.95441 1.68500 1.09953 1.01557 1.34811 1.23813 0.95636 1.00467 0.91964 1.23808 0.97068 0.93764 0.95915 1.68256 1.10508 1.01491 1.34696 1.22190 0.96925 0.80684 1.00877 1.24361 0.96895 0.92633 1.00265 1.77150 0.98626 1.12383 1.23473 1.49393 1.02532 1.08284 1.48786 1.19857 0.96434 0.70920 0.99443 1.21251 1.47451 0.98149 0.91026 0.91646 1.24928 0.94446 0.96020 0.98282 1.69914 1.44490 1.07233 1.31011 0.86322 0.78094 0.78655 0.83459 1.20244 1.20791 1.19583 0.90481 0.88650 0.89850 0.90306 0.90285 0.89140 0.90311 0.81035 0.81296 0.81210 0.89741 0.91192 0.79827 0.92483 0.92555 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 9.34 36.00 0.34 -1.44 16 2 C 0.17 3.40 7.01 -81.60 -0.57 2.83 16 3 C -0.33 -6.03 6.09 -105.07 -0.64 -6.67 16 4 C 0.62 10.39 7.85 -12.52 -0.10 10.30 16 5 O -0.55 -10.55 15.09 5.27 0.08 -10.47 16 6 N -0.62 -7.68 3.33 -171.79 -0.57 -8.26 16 7 C 0.10 0.88 4.98 -3.06 -0.02 0.87 16 8 C -0.12 -0.83 6.41 -24.89 -0.16 -0.98 16 9 C -0.05 -0.42 3.44 -89.64 -0.31 -0.73 16 10 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 11 C 0.10 0.83 5.89 -82.41 -0.49 0.34 16 12 C 0.05 0.44 10.30 -17.37 -0.18 0.26 16 13 N -0.43 -3.83 10.50 -13.06 -0.14 -3.96 16 14 C 0.04 0.26 11.22 -17.37 -0.20 0.07 16 15 C 0.05 0.35 11.22 -17.37 -0.20 0.15 16 16 N -0.43 -3.84 10.42 -9.29 -0.10 -3.94 16 17 C 0.12 1.16 6.20 -2.54 -0.02 1.14 16 18 C 0.04 0.78 10.45 -16.98 -0.18 0.60 16 19 N -0.30 -6.32 12.50 30.86 0.39 -5.94 16 20 N -0.31 -7.05 3.56 -57.78 -0.21 -7.26 16 21 C 0.25 6.21 5.78 -5.19 -0.03 6.18 16 22 C -0.54 -14.48 9.39 -34.44 -0.32 -14.81 16 23 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 24 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 25 N -0.89 -24.48 13.29 55.43 0.74 -23.74 16 26 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.09 1.70 6.50 -51.93 -0.34 1.36 16 32 H 0.08 1.56 7.71 -51.93 -0.40 1.16 16 33 H 0.08 0.68 7.02 -51.93 -0.36 0.31 16 34 H 0.08 0.72 6.81 -51.93 -0.35 0.37 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.48 8.01 -51.93 -0.42 0.07 16 37 H 0.17 1.17 6.11 -52.49 -0.32 0.85 16 38 H 0.17 0.53 8.06 -52.49 -0.42 0.10 16 39 H 0.17 0.53 8.06 -52.48 -0.42 0.11 16 40 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 41 H 0.07 0.61 5.74 -51.93 -0.30 0.32 16 42 H 0.19 2.33 4.47 -52.49 -0.23 2.10 16 43 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.06 1.39 7.63 -51.93 -0.40 0.99 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -33.16 373.41 -7.98 -41.14 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.62 Total: 1.27 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -3.15 Total: -0.20 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.11 Total: -53.09 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.16 -7.98 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364975918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.955 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds