Wall clock time and date at job start Sat Apr 11 2020 06:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38036 * 126.29211 * 2 1 4 4 C 1.47430 * 126.41617 * 0.02562 * 3 2 1 5 5 O 1.21606 * 119.99827 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00234 * 179.97438 * 4 3 2 7 7 C 1.47021 * 125.64649 * 359.68690 * 6 4 3 8 8 C 1.54335 * 107.26502 * 178.85252 * 7 6 4 9 9 C 1.55157 * 103.02054 * 338.14323 * 8 7 6 10 10 H 1.09006 * 111.00028 * 277.23204 * 9 8 7 11 11 C 1.50702 * 111.00391 * 153.38356 * 9 8 7 12 12 C 1.38389 * 119.99729 * 281.34597 * 11 9 8 13 13 N 1.32123 * 119.99321 * 179.97438 * 12 11 9 14 14 C 1.32149 * 120.00630 * 359.97438 * 13 12 11 15 15 C 1.38347 * 119.99690 * 0.02562 * 14 13 12 16 16 N 1.32116 * 120.00199 * 101.07270 * 11 9 8 17 17 C 1.47424 * 125.65104 * 179.97438 * 6 4 3 18 18 C 1.41294 * 107.17120 * 179.97438 * 3 2 1 19 19 N 1.30440 * 108.02337 * 0.02562 * 18 3 2 20 20 N 1.34264 * 126.29134 * 179.97438 * 2 1 3 21 21 C 1.46498 * 125.75124 * 359.75430 * 20 2 1 22 22 C 1.50704 * 109.47330 * 90.00344 * 21 20 2 23 23 H 1.07999 * 119.99597 * 359.97438 * 22 21 20 24 24 C 1.37876 * 120.00001 * 180.02562 * 22 21 20 25 25 N 1.31517 * 120.00082 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99888 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47127 * 89.99472 * 26 24 22 28 28 H 1.48495 * 109.46905 * 209.99651 * 26 24 22 29 29 H 1.48507 * 109.46876 * 329.99500 * 26 24 22 30 30 H 1.08998 * 109.46868 * 269.99473 * 1 2 3 31 31 H 1.08994 * 109.47041 * 29.99372 * 1 2 3 32 32 H 1.09000 * 109.47478 * 149.99697 * 1 2 3 33 33 H 1.09001 * 109.88396 * 298.39640 * 7 6 4 34 34 H 1.09002 * 109.88338 * 59.56109 * 7 6 4 35 35 H 1.09002 * 110.84996 * 219.66894 * 8 7 6 36 36 H 1.09004 * 110.51263 * 96.45435 * 8 7 6 37 37 H 1.08000 * 120.00105 * 359.95458 * 12 11 9 38 38 H 1.07996 * 120.00745 * 180.02562 * 14 13 12 39 39 H 1.08007 * 119.99845 * 179.97438 * 15 14 13 40 40 H 1.09003 * 110.36085 * 322.92668 * 17 6 4 41 41 H 1.09002 * 110.36699 * 85.13466 * 17 6 4 42 42 H 1.08002 * 125.98920 * 179.97438 * 18 3 2 43 43 H 1.09001 * 109.47019 * 210.00203 * 21 20 2 44 44 H 1.08997 * 109.47542 * 329.99596 * 21 20 2 45 45 H 0.96998 * 119.99721 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6995 2.7877 0.0006 6 7 2.7999 3.5107 0.0010 7 6 4.2590 3.3300 0.0075 8 6 4.8948 4.7359 -0.0240 9 6 3.7613 5.6191 -0.6093 10 1 3.7440 5.5621 -1.6977 11 6 3.8962 7.0473 -0.1475 12 6 3.4813 7.4057 1.1232 13 7 3.6001 8.6577 1.5281 14 6 4.1155 9.5675 0.7202 15 6 4.5303 9.2091 -0.5501 16 7 4.4156 7.9560 -0.9537 17 6 2.5024 4.9546 0.0010 18 6 3.6590 0.6498 0.0006 19 7 3.6340 -0.6544 0.0004 20 7 2.3017 -1.0822 0.0005 21 6 1.8500 -2.4758 0.0062 22 6 1.6903 -2.9580 -1.4127 23 1 1.9035 -2.2927 -2.2362 24 6 1.2710 -4.2481 -1.6592 25 7 1.0109 -5.0581 -0.6563 26 14 1.0724 -4.8455 -3.4180 27 1 2.3514 -5.4358 -3.8877 28 1 0.0026 -5.8740 -3.4735 29 1 0.7050 -3.7016 -4.2908 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3633 0.8900 -0.5137 32 1 -0.3634 -0.8899 -0.5139 33 1 4.5633 2.8036 0.9122 34 1 4.5667 2.7661 -0.8731 35 1 5.7701 4.7514 -0.6734 36 1 5.1550 5.0601 0.9836 37 1 3.0601 6.6621 1.7835 38 1 4.2130 10.5909 1.0513 39 1 4.9512 9.9528 -1.2106 40 1 1.6275 5.1615 -0.6154 41 1 2.3405 5.3085 1.0192 42 1 4.5449 1.2675 0.0004 43 1 2.5864 -3.0943 0.5194 44 1 0.8932 -2.5456 0.5236 45 1 0.7163 -5.9658 -0.8298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364975918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:18 Heat of formation + Delta-G solvation = 72.688304 kcal Electronic energy + Delta-G solvation = -28558.151800 eV Core-core repulsion = 24576.684208 eV Total energy + Delta-G solvation = -3981.467592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.43827 -42.13733 -40.53752 -38.44063 -35.84912 -35.36281 -34.28265 -33.61598 -32.72384 -31.44405 -30.18229 -28.88806 -28.22191 -26.04216 -25.59323 -25.11160 -24.42144 -22.38660 -21.96184 -21.22657 -19.85093 -18.86801 -18.66637 -18.29881 -18.02520 -17.15174 -16.97492 -16.58064 -16.47347 -16.19034 -15.88079 -15.74957 -15.16285 -14.95586 -14.74280 -14.44992 -14.33134 -14.10502 -13.85735 -13.73493 -13.62333 -13.43276 -13.38757 -13.11951 -12.95804 -12.72833 -12.68890 -12.57564 -12.34113 -12.22381 -12.04229 -11.87264 -11.76184 -11.72711 -10.83731 -10.76531 -10.26885 -10.15429 -10.02291 -9.76760 -9.38296 -8.38156 -6.54489 -0.20259 0.15449 0.65688 1.31878 1.37141 1.38611 1.48526 1.63771 2.01584 2.32273 2.48587 2.68475 2.93852 3.00380 3.29741 3.42335 3.53574 3.59421 3.73879 3.83640 3.92420 4.04727 4.08411 4.21070 4.25542 4.29897 4.34869 4.45393 4.48978 4.59434 4.65086 4.72789 4.77393 4.79937 4.87265 4.90208 5.02547 5.07038 5.14559 5.19338 5.37038 5.43528 5.48916 5.67824 5.74592 6.04104 6.32513 6.48875 6.54573 6.82143 6.82762 7.16543 7.24667 8.69667 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027983 B = 0.002056 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.362213 B =13614.020505 C =13753.941270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.146 3.854 3 C -0.328 4.328 4 C 0.618 3.382 5 O -0.583 6.583 6 N -0.614 5.614 7 C 0.086 3.914 8 C -0.107 4.107 9 C -0.041 4.041 10 H 0.104 0.896 11 C 0.090 3.910 12 C 0.044 3.956 13 N -0.460 5.460 14 C 0.043 3.957 15 C 0.055 3.945 16 N -0.458 5.458 17 C 0.114 3.886 18 C 0.068 3.932 19 N -0.335 5.335 20 N -0.337 5.337 21 C 0.267 3.733 22 C -0.555 4.555 23 H 0.051 0.949 24 C 0.024 3.976 25 N -0.916 5.916 26 Si 0.971 3.029 27 H -0.272 1.272 28 H -0.272 1.272 29 H -0.270 1.270 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.179 0.821 38 H 0.201 0.799 39 H 0.203 0.797 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.231 0.769 43 H 0.033 0.967 44 H 0.050 0.950 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.744 27.889 2.227 29.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.010 3.990 3 C -0.343 4.343 4 C 0.410 3.590 5 O -0.465 6.465 6 N -0.347 5.347 7 C -0.036 4.036 8 C -0.145 4.145 9 C -0.062 4.062 10 H 0.122 0.878 11 C -0.050 4.050 12 C -0.115 4.115 13 N -0.175 5.175 14 C -0.117 4.117 15 C -0.105 4.105 16 N -0.173 5.173 17 C -0.008 4.008 18 C -0.118 4.118 19 N -0.155 5.155 20 N -0.114 5.114 21 C 0.148 3.852 22 C -0.593 4.593 23 H 0.070 0.930 24 C -0.178 4.178 25 N -0.554 5.554 26 Si 0.795 3.205 27 H -0.197 1.197 28 H -0.196 1.196 29 H -0.195 1.195 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.196 0.804 38 H 0.218 0.782 39 H 0.219 0.781 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.246 0.754 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.702 26.518 2.302 28.004 hybrid contribution -0.712 -0.119 -0.721 1.020 sum 7.991 26.398 1.580 27.626 Atomic orbital electron populations 1.20577 0.85904 1.04206 1.04082 1.21942 0.95930 0.86687 0.94426 1.19836 0.93405 0.92672 1.28368 1.16776 0.84124 0.83288 0.74794 1.90687 1.17537 1.84429 1.53801 1.48021 1.07292 1.05538 1.73838 1.22632 0.78568 0.98962 1.03430 1.22731 0.97301 0.91270 1.03210 1.21043 0.95523 0.87707 1.01895 0.87781 1.21792 0.95414 0.95892 0.91863 1.23834 0.97647 0.94444 0.95591 1.68515 1.10953 1.02111 1.35914 1.24373 0.94184 1.01415 0.91717 1.24363 0.96172 0.93490 0.96428 1.68247 1.11258 1.02567 1.35270 1.22329 0.97523 0.79278 1.01697 1.25093 0.98005 0.91568 0.97169 1.77105 0.98305 1.14445 1.25633 1.49129 1.03417 1.07718 1.51127 1.19374 0.95309 0.72330 0.98149 1.21386 1.47922 0.98467 0.91560 0.93041 1.25728 0.93851 0.95983 1.02220 1.69995 1.44828 1.07649 1.32894 0.85353 0.78355 0.78188 0.78613 1.19741 1.19629 1.19495 0.89005 0.88418 0.91117 0.89080 0.89785 0.87437 0.89038 0.80414 0.78196 0.78058 0.91278 0.89775 0.75352 0.94925 0.93197 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.34 9.34 71.24 0.67 -2.68 16 2 C 0.15 6.07 7.01 42.14 0.30 6.37 16 3 C -0.33 -11.86 6.09 -20.15 -0.12 -11.98 16 4 C 0.62 20.28 7.85 86.66 0.68 20.96 16 5 O -0.58 -22.33 15.09 -4.05 -0.06 -22.39 16 6 N -0.61 -14.23 3.33 -815.68 -2.71 -16.94 16 7 C 0.09 1.32 4.98 86.73 0.43 1.76 16 8 C -0.11 -1.14 6.41 31.79 0.20 -0.94 16 9 C -0.04 -0.58 3.44 -10.16 -0.03 -0.62 16 10 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 11 C 0.09 1.36 5.89 42.55 0.25 1.61 16 12 C 0.04 0.65 10.30 84.68 0.87 1.52 16 13 N -0.46 -7.27 10.50 -195.23 -2.05 -9.32 16 14 C 0.04 0.43 11.22 84.67 0.95 1.38 16 15 C 0.06 0.56 11.22 84.67 0.95 1.51 16 16 N -0.46 -7.12 10.42 -183.29 -1.91 -9.03 16 17 C 0.11 2.13 6.20 86.85 0.54 2.67 16 18 C 0.07 2.26 10.45 85.65 0.89 3.16 16 19 N -0.34 -14.38 12.50 -56.27 -0.70 -15.08 16 20 N -0.34 -15.61 3.56 -336.70 -1.20 -16.81 16 21 C 0.27 13.81 5.78 85.63 0.50 14.30 16 22 C -0.56 -30.63 9.39 25.60 0.24 -30.39 16 23 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 24 C 0.02 1.28 5.46 84.65 0.46 1.74 16 25 N -0.92 -51.21 13.29 21.45 0.28 -50.93 16 26 Si 0.97 42.72 29.54 68.60 2.03 44.75 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 28 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 29 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 30 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.10 3.57 6.50 -2.39 -0.02 3.56 16 32 H 0.07 2.77 7.71 -2.39 -0.02 2.75 16 33 H 0.09 1.24 7.02 -2.39 -0.02 1.22 16 34 H 0.08 1.26 6.81 -2.39 -0.02 1.24 16 35 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 0.80 8.01 -2.38 -0.02 0.78 16 37 H 0.18 2.18 6.11 -2.91 -0.02 2.16 16 38 H 0.20 0.56 8.06 -2.91 -0.02 0.54 16 39 H 0.20 0.53 8.06 -2.91 -0.02 0.51 16 40 H 0.07 1.52 8.04 -2.39 -0.02 1.50 16 41 H 0.08 1.36 5.74 -2.39 -0.01 1.34 16 42 H 0.23 5.13 4.47 -2.91 -0.01 5.12 16 43 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.05 2.59 7.63 -2.39 -0.02 2.57 16 45 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -73.55 373.41 2.48 -71.07 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 1.03 Total: 14.32 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 7.77 Total: 10.37 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -8.29 Total: -118.11 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.06 Total: -22.39 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -73.55 2.48 -71.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364975918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.759 kcal (2) G-P(sol) polarization free energy of solvation -73.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds