Wall clock time and date at job start Sat Apr 11 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.52479 * 2 1 4 4 C 1.34780 * 119.99566 * 59.87854 * 3 2 1 5 5 O 1.21280 * 120.00423 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99795 * 180.02562 * 4 3 2 7 7 S 1.81002 * 109.47156 * 179.97438 * 6 4 3 8 8 C 1.76193 * 100.00049 * 180.02562 * 7 6 4 9 9 H 1.08005 * 120.00026 * 359.97438 * 8 7 6 10 10 C 1.38806 * 120.00056 * 180.02562 * 8 7 6 11 11 N 1.31623 * 119.99640 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00053 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.47315 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47332 * 119.99854 * 12 10 8 15 15 H 1.48499 * 109.47328 * 240.00154 * 12 10 8 16 16 C 1.53121 * 109.57443 * 120.16350 * 2 1 3 17 17 C 1.53030 * 109.27827 * 177.58912 * 16 2 1 18 18 N 1.46851 * 109.52571 * 300.81943 * 17 16 2 19 19 C 1.46897 * 111.00085 * 185.84003 * 18 17 16 20 20 H 1.09004 * 110.43264 * 291.87399 * 19 18 17 21 21 C 1.54625 * 110.48987 * 54.56388 * 19 18 17 22 22 C 1.54478 * 101.76738 * 143.47333 * 21 19 18 23 23 N 1.46756 * 105.47110 * 334.58387 * 22 21 19 24 24 C 1.34418 * 111.30842 * 17.01683 * 23 22 21 25 25 O 1.21276 * 124.94835 * 179.62678 * 24 23 22 26 26 C 1.46848 * 111.19514 * 61.73879 * 18 17 16 27 27 C 1.53037 * 109.52899 * 298.26097 * 26 18 17 28 28 H 1.09005 * 109.47090 * 59.99254 * 1 2 3 29 29 H 1.08996 * 109.47621 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46999 * 299.99900 * 1 2 3 31 31 H 0.96995 * 120.00423 * 239.87160 * 3 2 1 32 32 H 1.09002 * 109.47060 * 299.99722 * 6 4 3 33 33 H 1.09001 * 109.47380 * 59.99809 * 6 4 3 34 34 H 0.97010 * 119.99946 * 180.02562 * 11 10 8 35 35 H 1.08994 * 109.49986 * 297.53039 * 16 2 1 36 36 H 1.08997 * 109.50458 * 57.64737 * 16 2 1 37 37 H 1.08997 * 109.46658 * 180.80426 * 17 16 2 38 38 H 1.09004 * 109.46411 * 60.83302 * 17 16 2 39 39 H 1.09003 * 110.96772 * 261.59592 * 21 19 18 40 40 H 1.09006 * 110.96851 * 25.35273 * 21 19 18 41 41 H 1.09000 * 110.24403 * 215.58185 * 22 21 19 42 42 H 1.09000 * 110.31526 * 93.62458 * 22 21 19 43 43 H 0.97005 * 124.34536 * 197.03486 * 23 22 21 44 44 H 1.09006 * 109.46222 * 178.24264 * 26 18 17 45 45 H 1.09005 * 109.45085 * 58.27352 * 26 18 17 46 46 H 1.09002 * 109.49691 * 299.23932 * 27 26 18 47 47 H 1.08997 * 109.50436 * 179.12063 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3807 0.0000 4 6 1.6927 2.2116 1.0097 5 8 0.9929 1.8163 1.9179 6 6 2.1959 3.6321 1.0094 7 16 1.5899 4.4871 2.4852 8 6 2.3067 6.0769 2.2338 9 1 2.9118 6.2642 1.3590 10 6 2.0945 7.0883 3.1605 11 7 1.3575 6.8598 4.2268 12 14 2.8551 8.7735 2.8943 13 1 3.6334 8.7712 1.6295 14 1 1.7799 9.7945 2.8126 15 1 3.7572 9.0944 4.0294 16 6 2.0430 -0.7249 1.2474 17 6 3.5721 -0.7737 1.2104 18 7 4.0116 -1.4768 -0.0017 19 6 5.4685 -1.6644 -0.0025 20 1 5.9756 -0.7054 -0.1096 21 6 5.9230 -2.3786 1.2915 22 6 7.0659 -3.2777 0.7702 23 7 6.7702 -3.5031 -0.6495 24 6 5.8802 -2.6078 -1.1112 25 8 5.4668 -2.5633 -2.2505 26 6 3.5708 -0.7731 -1.2129 27 6 2.0416 -0.7243 -1.2483 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.5791 1.6970 -0.7265 32 1 3.2859 3.6315 1.0114 33 1 1.8344 4.1455 0.1184 34 1 1.2089 7.5667 4.8743 35 1 1.7175 -0.1894 2.1391 36 1 1.6469 -1.7402 1.2670 37 1 3.9401 -1.3018 2.0900 38 1 3.9679 0.2419 1.2047 39 1 6.2939 -1.6610 2.0234 40 1 5.1149 -2.9784 1.7104 41 1 7.0757 -4.2254 1.3086 42 1 8.0253 -2.7721 0.8802 43 1 7.1661 -4.2078 -1.1857 44 1 3.9378 -1.3008 -2.0933 45 1 3.9666 0.2425 -1.2070 46 1 1.6456 -1.7396 -1.2680 47 1 1.7152 -0.1883 -2.1395 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483961463.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:39 Heat of formation + Delta-G solvation = -63.044520 kcal Electronic energy + Delta-G solvation = -28340.606765 eV Core-core repulsion = 24456.404556 eV Total energy + Delta-G solvation = -3884.202209 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.09982 -40.05933 -37.87153 -36.73294 -35.09979 -32.43828 -32.17545 -31.11392 -30.56870 -28.72956 -28.28731 -26.22166 -25.48392 -23.78253 -22.47408 -21.58320 -20.82864 -20.37080 -18.98783 -17.89500 -17.75737 -17.27919 -16.38604 -15.92649 -15.58863 -15.09307 -14.93175 -14.81220 -14.72578 -14.32116 -14.08338 -14.07926 -13.79145 -13.53773 -13.31754 -13.17141 -12.89679 -12.63146 -12.51516 -12.19671 -12.10691 -11.89277 -11.77968 -11.61328 -11.38004 -11.17092 -11.07599 -11.02102 -10.76654 -10.71196 -10.53113 -9.84820 -9.80095 -9.51047 -9.08994 -9.08329 -8.85308 -8.48534 -8.23122 -6.49771 -6.22690 -3.92504 2.21821 2.91281 3.06173 3.13949 3.20599 3.27853 3.33067 3.65146 3.77308 3.91238 4.09124 4.19923 4.56773 4.60513 4.63943 4.71143 4.88233 4.99364 5.06770 5.11975 5.12678 5.19569 5.27701 5.36827 5.41370 5.47420 5.53508 5.64248 5.67485 5.79061 5.83170 5.89663 5.92181 5.97782 6.02718 6.09419 6.14993 6.29299 6.37078 6.46219 6.61736 6.77928 6.83946 6.90231 7.59216 7.81409 7.90327 8.34688 8.68879 9.23044 10.84721 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.002590 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.524785 B =10806.375095 C =11685.948947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.177 3.823 3 N -0.731 5.731 4 C 0.535 3.465 5 O -0.513 6.513 6 C -0.155 4.155 7 S -0.058 6.058 8 C -0.535 4.535 9 H 0.072 0.928 10 C 0.073 3.927 11 N -0.867 5.867 12 Si 0.918 3.082 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.280 1.280 16 C -0.125 4.125 17 C 0.056 3.944 18 N -0.518 5.518 19 C 0.048 3.952 20 H 0.079 0.921 21 C -0.130 4.130 22 C 0.103 3.897 23 N -0.732 5.732 24 C 0.533 3.467 25 O -0.524 6.524 26 C 0.039 3.961 27 C -0.114 4.114 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.394 0.606 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.268 0.732 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.039 0.961 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.411 0.589 44 H 0.106 0.894 45 H 0.032 0.968 46 H 0.084 0.916 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.211 -21.842 -9.084 25.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.091 3.909 3 N -0.385 5.385 4 C 0.321 3.679 5 O -0.388 6.388 6 C -0.305 4.305 7 S 0.168 5.832 8 C -0.683 4.683 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.503 5.503 12 Si 0.744 3.256 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.206 1.206 16 C -0.164 4.164 17 C -0.071 4.071 18 N -0.244 5.244 19 C -0.064 4.064 20 H 0.097 0.903 21 C -0.168 4.168 22 C -0.022 4.022 23 N -0.388 5.388 24 C 0.318 3.682 25 O -0.399 6.399 26 C -0.088 4.088 27 C -0.152 4.152 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.228 0.772 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.057 0.943 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.249 0.751 44 H 0.123 0.877 45 H 0.050 0.950 46 H 0.103 0.897 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.469 -22.771 -7.934 25.558 hybrid contribution 2.249 2.261 -1.742 3.633 sum 10.718 -20.511 -9.676 25.083 Atomic orbital electron populations 1.22195 0.94186 1.02013 1.03688 1.20310 0.94154 0.81148 0.95320 1.46213 1.54777 1.11592 1.25944 1.20197 0.79674 0.86711 0.81287 1.90626 1.36316 1.76525 1.35311 1.23553 1.04147 0.95346 1.07501 1.85345 1.67474 1.08104 1.22238 1.22912 1.37018 0.96980 1.11395 0.90992 1.24986 0.95085 0.99047 0.94479 1.70026 1.36336 1.33542 1.10381 0.86130 0.78888 0.82269 0.78289 1.19646 1.20555 1.20584 1.22004 0.93861 1.00943 0.99544 1.22147 0.96516 0.96665 0.91768 1.61975 1.08255 1.50829 1.03298 1.22272 0.90976 0.98151 0.95004 0.90303 1.22789 0.98372 0.99146 0.96470 1.22078 0.98497 1.00697 0.80954 1.46114 1.45911 1.33938 1.12847 1.20623 0.77783 0.81374 0.88385 1.90669 1.56422 1.72548 1.20283 1.22447 0.95581 0.96807 0.94008 1.21864 0.94921 1.01551 0.96863 0.92826 0.92204 0.89888 0.77177 0.89637 0.89459 0.92257 0.88629 0.90746 0.90452 0.94256 0.88922 0.88537 0.89945 0.90883 0.75081 0.87652 0.95004 0.89710 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 8.41 37.16 0.31 -1.76 16 2 C 0.18 2.13 0.66 -131.69 -0.09 2.04 16 3 N -0.73 -9.74 4.16 -47.49 -0.20 -9.93 16 4 C 0.54 9.55 7.27 -10.98 -0.08 9.47 16 5 O -0.51 -10.76 12.08 5.56 0.07 -10.69 16 6 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 7 S -0.06 -1.55 20.57 -107.50 -2.21 -3.77 16 8 C -0.53 -15.16 9.50 30.94 0.29 -14.86 16 9 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 10 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 11 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 12 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 C -0.12 -1.53 4.72 -26.65 -0.13 -1.66 16 17 C 0.06 0.61 5.06 -3.83 -0.02 0.59 16 18 N -0.52 -5.27 4.50 -226.70 -1.02 -6.29 16 19 C 0.05 0.42 2.66 -67.72 -0.18 0.24 16 20 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 21 C -0.13 -0.75 5.39 -25.10 -0.14 -0.89 16 22 C 0.10 0.43 7.78 -3.13 -0.02 0.41 16 23 N -0.73 -4.83 6.24 -59.21 -0.37 -5.20 16 24 C 0.53 5.37 8.01 -10.86 -0.09 5.28 16 25 O -0.52 -7.14 15.35 5.56 0.09 -7.06 16 26 C 0.04 0.42 5.16 -3.83 -0.02 0.40 16 27 C -0.11 -1.16 4.93 -26.65 -0.13 -1.29 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.32 6.16 -51.93 -0.32 1.00 16 31 H 0.39 4.48 7.47 -40.82 -0.30 4.17 16 32 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 33 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.10 1.46 6.14 -51.93 -0.32 1.14 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.74 6.46 -51.93 -0.34 0.40 16 38 H 0.04 0.49 7.69 -51.93 -0.40 0.09 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.60 7.55 -51.93 -0.39 0.21 16 41 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 43 H 0.41 2.10 8.96 -40.82 -0.37 1.73 16 44 H 0.11 1.28 5.34 -51.93 -0.28 1.00 16 45 H 0.03 0.34 7.01 -51.93 -0.36 -0.03 16 46 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 376.66 15.07 5.68 5.68 Total: -1.00 -34.97 376.66 -9.69 -44.66 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -7.27 Total: 4.45 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -0.16 Total: -2.90 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.85 Total: -46.69 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.15 Total: -17.75 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.97 -9.69 -44.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483961463.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.388 kcal (2) G-P(sol) polarization free energy of solvation -34.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds