Wall clock time and date at job start Sat Apr 11 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 110.27281 * 2 1 4 4 C 1.34776 * 119.99750 * 302.08471 * 3 2 1 5 5 O 1.21280 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99720 * 180.02562 * 4 3 2 7 7 S 1.80995 * 109.47163 * 180.02562 * 6 4 3 8 8 C 1.76199 * 99.99933 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00353 * 0.02562 * 8 7 6 10 10 C 1.38801 * 119.99705 * 179.97438 * 8 7 6 11 11 N 1.31625 * 120.00132 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99774 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47297 * 179.97438 * 12 10 8 14 14 H 1.48503 * 109.47261 * 60.00133 * 12 10 8 15 15 H 1.48500 * 109.47454 * 300.00126 * 12 10 8 16 16 C 1.54594 * 110.39327 * 237.85200 * 2 1 3 17 17 C 1.54938 * 102.92129 * 219.08404 * 16 2 1 18 18 N 1.48536 * 103.22520 * 37.41980 * 17 16 2 19 19 C 1.46908 * 110.99682 * 200.28153 * 18 17 16 20 20 C 1.50703 * 109.46833 * 307.38914 * 19 18 17 21 21 O 1.21286 * 120.00039 * 0.02562 * 20 19 18 22 22 N 1.34778 * 120.00058 * 180.02562 * 20 19 18 23 23 C 1.46494 * 120.00180 * 180.02562 * 22 20 19 24 24 C 1.52997 * 117.49831 * 223.74861 * 23 22 20 25 25 C 1.52997 * 117.50083 * 155.08514 * 23 22 20 26 26 C 1.47902 * 105.81762 * 320.78599 * 18 17 16 27 27 H 1.09000 * 109.46899 * 59.30469 * 1 2 3 28 28 H 1.09004 * 109.47166 * 179.30281 * 1 2 3 29 29 H 1.08994 * 109.47172 * 299.29726 * 1 2 3 30 30 H 0.96997 * 119.99813 * 122.09286 * 3 2 1 31 31 H 1.08995 * 109.47138 * 59.99991 * 6 4 3 32 32 H 1.08998 * 109.47102 * 300.00238 * 6 4 3 33 33 H 0.97001 * 120.00200 * 359.97438 * 11 10 8 34 34 H 1.09008 * 110.72410 * 337.44455 * 16 2 1 35 35 H 1.08995 * 110.72420 * 100.73019 * 16 2 1 36 36 H 1.08992 * 110.67184 * 278.97991 * 17 16 2 37 37 H 1.09003 * 110.80866 * 155.91331 * 17 16 2 38 38 H 1.08996 * 109.47142 * 67.38796 * 19 18 17 39 39 H 1.08999 * 109.46797 * 187.39148 * 19 18 17 40 40 H 0.97002 * 119.99460 * 0.02562 * 22 20 19 41 41 H 1.09006 * 115.54924 * 9.41293 * 23 22 20 42 42 H 1.09005 * 117.49979 * 359.97438 * 24 23 22 43 43 H 1.09002 * 117.50065 * 145.01746 * 24 23 22 44 44 H 1.08995 * 117.50200 * 214.97484 * 25 23 22 45 45 H 1.09002 * 117.49857 * 359.97438 * 25 23 22 46 46 H 1.08994 * 109.92161 * 265.97746 * 26 18 17 47 47 H 1.09005 * 110.08155 * 144.77847 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0377 1.3743 0.0000 4 6 1.6895 2.2212 -0.9889 5 8 0.9557 1.8458 -1.8786 6 6 2.2122 3.6346 -0.9892 7 16 1.5702 4.5149 -2.4346 8 6 2.3170 6.0918 -2.1889 9 1 2.9529 6.2607 -1.3325 10 6 2.0888 7.1167 -3.0967 11 7 1.3142 6.9108 -4.1408 12 14 2.8799 8.7887 -2.8359 13 1 2.4819 9.7019 -3.9374 14 1 4.3575 8.6410 -2.8256 15 1 2.4297 9.3524 -1.5379 16 6 2.0688 -0.7710 -1.2269 17 6 3.2882 -1.5326 -0.6494 18 7 2.8333 -1.9217 0.7100 19 6 3.9768 -2.2224 1.5819 20 6 4.8700 -3.2321 0.9083 21 8 4.5826 -3.6589 -0.1900 22 7 5.9882 -3.6610 1.5265 23 6 6.8568 -4.6422 0.8715 24 6 7.3923 -5.7931 1.7257 25 6 8.3303 -4.6673 1.2829 26 6 2.0645 -0.7672 1.2236 27 1 -0.3633 0.5246 -0.8837 28 1 -0.3634 -1.0276 -0.0125 29 1 -0.3633 0.5028 0.8962 30 1 2.6244 1.6745 0.7117 31 1 3.3014 3.6193 -1.0269 32 1 1.8872 4.1424 -0.0811 33 1 0.9030 6.0427 -4.2760 34 1 1.3206 -1.4691 -1.6027 35 1 2.3811 -0.0802 -2.0099 36 1 4.1581 -0.8785 -0.5914 37 1 3.5119 -2.4160 -1.2476 38 1 4.5397 -1.3084 1.7710 39 1 3.6162 -2.6292 2.5266 40 1 6.2179 -3.3200 2.4050 41 1 6.6217 -4.8563 -0.1711 42 1 7.0986 -5.8200 2.7751 43 1 7.5098 -6.7643 1.2450 44 1 9.0644 -4.8983 0.5112 45 1 8.6535 -3.9534 2.0406 46 1 2.7147 -0.1204 1.8125 47 1 1.2326 -1.1144 1.8366 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484030036.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:41 Heat of formation + Delta-G solvation = -62.179189 kcal Electronic energy + Delta-G solvation = -27105.064145 eV Core-core repulsion = 23220.899460 eV Total energy + Delta-G solvation = -3884.164685 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.71863 -40.83952 -39.27439 -37.96155 -35.62607 -34.75109 -34.00939 -33.09552 -31.03590 -30.05833 -28.69664 -27.08459 -26.01622 -23.42793 -23.28801 -22.74939 -21.94292 -21.61250 -20.68495 -20.37220 -18.47771 -17.97467 -17.73517 -17.20907 -16.84381 -16.60278 -16.43395 -16.23438 -15.75563 -15.55812 -15.26811 -15.00929 -14.87779 -14.61840 -14.47283 -14.26900 -13.97005 -13.91172 -13.64893 -13.56044 -13.14678 -13.07929 -12.74176 -12.62011 -12.49105 -12.42561 -12.24905 -12.02493 -11.98142 -11.96139 -11.55479 -11.47298 -11.10093 -10.80428 -10.73501 -10.32404 -10.14825 -9.77689 -9.47602 -8.92886 -8.86689 -6.27741 1.19716 1.51369 1.53600 1.54818 1.60001 1.80078 1.92638 2.17923 2.34679 2.95803 2.97741 3.01855 3.14233 3.37480 3.55800 3.77901 3.82470 3.85839 3.91236 4.03520 4.05980 4.16126 4.17392 4.26264 4.30314 4.36104 4.40678 4.50674 4.72603 4.75280 4.78265 4.79265 4.82981 4.93378 5.00896 5.08225 5.11968 5.19084 5.31571 5.44632 5.53706 5.63262 5.74137 5.85408 6.14125 6.46599 6.52276 7.05836 7.20409 7.24969 8.50450 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.002024 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.669660 B =13833.258564 C =14902.836317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.166 3.834 3 N -0.705 5.705 4 C 0.535 3.465 5 O -0.551 6.551 6 C -0.110 4.110 7 S -0.193 6.193 8 C -0.614 4.614 9 H 0.075 0.925 10 C -0.020 4.020 11 N -0.913 5.913 12 Si 1.136 2.864 13 H -0.281 1.281 14 H -0.263 1.263 15 H -0.262 1.262 16 C -0.126 4.126 17 C 0.046 3.954 18 N -0.507 5.507 19 C 0.028 3.972 20 C 0.510 3.490 21 O -0.567 6.567 22 N -0.690 5.690 23 C 0.053 3.947 24 C -0.183 4.183 25 C -0.176 4.176 26 C 0.046 3.954 27 H 0.045 0.955 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.414 0.586 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.260 0.740 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.035 0.965 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.139 0.861 40 H 0.418 0.582 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.112 0.888 46 H 0.081 0.919 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.762 -23.321 22.565 34.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.080 3.920 3 N -0.360 5.360 4 C 0.321 3.679 5 O -0.428 6.428 6 C -0.262 4.262 7 S 0.033 5.967 8 C -0.762 4.762 9 H 0.093 0.907 10 C -0.223 4.223 11 N -0.548 5.548 12 Si 0.954 3.046 13 H -0.206 1.206 14 H -0.188 1.188 15 H -0.187 1.187 16 C -0.165 4.165 17 C -0.081 4.081 18 N -0.232 5.232 19 C -0.103 4.103 20 C 0.298 3.702 21 O -0.445 6.445 22 N -0.342 5.342 23 C -0.054 4.054 24 C -0.221 4.221 25 C -0.214 4.214 26 C -0.081 4.081 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.251 0.749 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.157 0.843 40 H 0.255 0.745 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.130 0.870 46 H 0.099 0.901 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.138 -23.253 19.693 32.444 hybrid contribution 1.410 -0.100 1.659 2.179 sum 12.548 -23.354 21.352 34.041 Atomic orbital electron populations 1.22137 0.93488 1.03038 1.02547 1.21183 0.94695 0.80335 0.95806 1.45975 1.51680 1.11283 1.27028 1.19922 0.79976 0.86329 0.81704 1.90678 1.36956 1.77711 1.37461 1.23242 1.04787 0.95374 1.02784 1.85068 1.67033 1.11322 1.33249 1.24038 1.37645 0.97960 1.16527 0.90699 1.27841 0.95361 1.07776 0.91344 1.70918 1.29424 1.25784 1.28705 0.82725 0.75860 0.69054 0.76991 1.20591 1.18831 1.18674 1.22825 0.98203 0.98268 0.97232 1.23271 0.94990 0.98723 0.91145 1.64739 1.20351 1.36340 1.01803 1.22393 0.91478 0.98326 0.98097 1.20997 0.81288 0.82404 0.85540 1.90675 1.73031 1.58720 1.22099 1.45222 1.23203 1.43644 1.22115 1.21565 0.91771 0.94453 0.97569 1.23496 1.02937 0.94450 1.01232 1.23465 0.91852 1.01809 1.04313 1.23234 0.99644 0.90674 0.94586 0.93580 0.90146 0.91193 0.74853 0.87494 0.87073 0.92901 0.90710 0.93181 0.94630 0.89199 0.89083 0.84292 0.74478 0.87111 0.87243 0.87765 0.87540 0.86982 0.90109 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 8.12 71.98 0.58 -3.17 16 2 C 0.17 3.74 0.94 4.48 0.00 3.75 16 3 N -0.70 -17.04 5.15 -418.94 -2.16 -19.19 16 4 C 0.54 19.17 7.04 87.66 0.62 19.78 16 5 O -0.55 -24.63 12.76 -3.03 -0.04 -24.67 16 6 C -0.11 -4.31 6.16 71.24 0.44 -3.88 16 7 S -0.19 -10.65 19.60 -56.49 -1.11 -11.76 16 8 C -0.61 -35.45 9.50 67.95 0.65 -34.80 16 9 H 0.07 4.03 7.80 -2.91 -0.02 4.01 16 10 C -0.02 -1.17 5.49 84.86 0.47 -0.71 16 11 N -0.91 -58.41 13.67 21.65 0.30 -58.11 16 12 Si 1.14 49.28 29.92 68.60 2.05 51.33 16 13 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 14 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 15 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 16 C -0.13 -3.49 5.85 31.80 0.19 -3.30 16 17 C 0.05 1.11 5.31 86.65 0.46 1.56 16 18 N -0.51 -8.91 5.26 -887.54 -4.67 -13.58 16 19 C 0.03 0.30 5.52 85.56 0.47 0.77 16 20 C 0.51 8.41 7.54 87.66 0.66 9.08 16 21 O -0.57 -15.04 13.08 -3.05 -0.04 -15.08 16 22 N -0.69 -7.09 5.57 -442.54 -2.46 -9.55 16 23 C 0.05 0.64 6.43 44.99 0.29 0.92 16 24 C -0.18 -1.36 10.46 30.62 0.32 -1.04 16 25 C -0.18 -1.24 10.46 30.62 0.32 -0.92 16 26 C 0.05 0.66 6.16 86.45 0.53 1.19 16 27 H 0.05 1.52 6.07 -2.39 -0.01 1.50 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.41 6.87 8.09 -92.71 -0.75 6.12 16 31 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 32 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 33 H 0.26 17.33 7.12 -92.71 -0.66 16.67 16 34 H 0.07 2.15 7.86 -2.38 -0.02 2.13 16 35 H 0.05 1.72 6.81 -2.39 -0.02 1.70 16 36 H 0.04 0.84 8.02 -2.39 -0.02 0.82 16 37 H 0.09 2.62 5.96 -2.39 -0.01 2.60 16 38 H 0.09 0.58 7.81 -2.39 -0.02 0.56 16 39 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.42 1.30 8.83 -92.71 -0.82 0.48 16 41 H 0.11 1.96 7.40 -2.38 -0.02 1.94 16 42 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 43 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.11 0.70 8.14 -2.39 -0.02 0.69 16 45 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.08 0.71 6.89 -2.39 -0.02 0.69 16 47 H 0.11 1.29 7.68 -2.38 -0.02 1.28 16 Total: -1.00 -85.26 390.91 -2.59 -87.85 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -0.46 Total: 23.52 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 6.00 Total: -10.76 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -8.99 Total: -100.43 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.08 Total: -39.75 kcal Atomic # 14 Polarization: 49.28 SS G_CDS: 2.05 Total: 51.33 kcal Atomic # 16 Polarization: -10.65 SS G_CDS: -1.11 Total: -11.76 kcal Total: -85.26 -2.59 -87.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484030036.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.668 kcal (2) G-P(sol) polarization free energy of solvation -85.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds